| Literature DB >> 22199477 |
Ichraf Chérif1, Jawher Abdelhak, Mohamed Faouzi Zid, Ahmed Driss.
Abstract
In the non-centrosymmetric structure of the title compound, (C(5)H(7)N(2))[Cr(C(2)O(4))(2)(H(2)O)(2)]·H(2)O, the Cr(III) ion has a slightly distorted octa-hedral coordination environment defined by two chelating oxalato ligands in equatorial positions and two water mol-ecules in axial positions. An extensive three-dimensional network of hydrogen bonds involving all the water mol-ecules, the 4-amino-pyridinium cation and some of the oxalate O atoms contributes to the stabilization of the structure. π-π inter-actions between adjacent pyridine rings provide additional stability of the crystal packing, with a closest distance between pyridine mean planes of 3.613 (1) Å.Entities:
Year: 2011 PMID: 22199477 PMCID: PMC3238586 DOI: 10.1107/S1600536811044837
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| (C5H7N2)[Cr(C2O4)2(H2O)2]·H2O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 25 reflections |
| θ = 10–15° | |
| µ = 0.85 mm−1 | |
| Prism, violet | |
| 0.54 × 0.18 × 0.12 mm |
| Enraf–Nonius CAD-4 diffractometer | 2857 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 27.0°, θmin = 2.4° |
| ω/2θ scans | |
| Absorption correction: ψ scan (North | |
| 3729 measured reflections | 2 standard reflections every 120 min |
| 3150 independent reflections | intensity decay: 2.9% |
| Refinement on | Hydrogen site location: difference Fourier map |
| Least-squares matrix: full | All H-atom parameters refined |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.30 e Å−3 | |
| 3150 reflections | Δρmin = −0.31 e Å−3 |
| 261 parameters | Extinction correction: |
| 1 restraint | Extinction coefficient: 0.0022 (7) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 1447 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: 0.000 (16) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cr1 | −0.196274 (13) | 0.09444 (3) | −0.00116 (5) | 0.01985 (9) | |
| O9 | −0.19814 (7) | 0.26620 (15) | 0.5002 (3) | 0.0295 (3) | |
| O3 | −0.27673 (7) | 0.09078 (16) | 0.1400 (2) | 0.0262 (3) | |
| O1 | −0.11408 (7) | 0.10787 (17) | −0.1273 (2) | 0.0264 (3) | |
| OW1 | −0.17053 (9) | −0.08746 (18) | 0.1118 (2) | 0.0283 (3) | |
| O4 | −0.16685 (7) | 0.19731 (16) | 0.2188 (2) | 0.0248 (3) | |
| OW2 | −0.22205 (8) | 0.27650 (18) | −0.1212 (2) | 0.0295 (3) | |
| O7 | −0.17687 (8) | −0.09782 (17) | −0.4830 (3) | 0.0340 (4) | |
| O2 | −0.22078 (7) | −0.00965 (16) | −0.2262 (2) | 0.0243 (3) | |
| O10 | −0.31987 (7) | 0.17303 (18) | 0.4006 (2) | 0.0337 (4) | |
| O8 | −0.06261 (8) | 0.0179 (2) | −0.3698 (3) | 0.0430 (5) | |
| C3 | −0.27494 (10) | 0.1550 (2) | 0.2972 (3) | 0.0228 (4) | |
| C1 | −0.17435 (10) | −0.0316 (2) | −0.3382 (3) | 0.0222 (4) | |
| C4 | −0.20797 (10) | 0.2123 (2) | 0.3479 (3) | 0.0218 (4) | |
| C2 | −0.11043 (10) | 0.0354 (2) | −0.2779 (3) | 0.0252 (4) | |
| C6 | −0.42595 (16) | 0.1102 (4) | 0.0242 (6) | 0.0625 (10) | |
| C8 | −0.51027 (14) | −0.1061 (3) | 0.0042 (7) | 0.0524 (7) | |
| N1 | −0.40576 (12) | −0.0224 (3) | 0.0161 (6) | 0.0657 (8) | |
| N2 | −0.59497 (12) | 0.0580 (3) | 0.0089 (8) | 0.0750 (10) | |
| C9 | −0.53327 (11) | 0.0317 (3) | 0.0117 (5) | 0.0413 (5) | |
| C7 | −0.44661 (16) | −0.1296 (4) | 0.0020 (8) | 0.0726 (10) | |
| OW3 | −0.06036 (9) | 0.9143 (3) | 0.2640 (3) | 0.0449 (5) | |
| C5 | −0.48794 (15) | 0.1402 (3) | 0.0211 (7) | 0.0597 (8) | |
| H8 | −0.5357 (18) | −0.181 (4) | 0.003 (6) | 0.079 (11)* | |
| H2 | −0.6222 (18) | −0.014 (4) | −0.026 (6) | 0.076 (12)* | |
| H1 | −0.359 (2) | −0.038 (5) | 0.028 (7) | 0.098 (14)* | |
| HW31 | −0.0613 (16) | 0.955 (4) | 0.358 (6) | 0.047 (10)* | |
| HW21 | −0.2581 (18) | 0.323 (4) | −0.100 (5) | 0.068 (11)* | |
| HW11 | −0.1303 (19) | −0.085 (4) | 0.155 (5) | 0.058 (10)* | |
| H6 | −0.3942 (19) | 0.183 (4) | 0.031 (6) | 0.079 (12)* | |
| HW32 | −0.022 (2) | 0.948 (4) | 0.220 (6) | 0.077 (12)* | |
| H5 | −0.5032 (19) | 0.233 (4) | 0.043 (5) | 0.077 (12)* | |
| H3 | −0.606 (2) | 0.147 (5) | 0.010 (7) | 0.094 (13)* | |
| H7 | −0.428 (2) | −0.226 (5) | 0.001 (8) | 0.110 (15)* | |
| HW12 | −0.180 (2) | −0.146 (5) | 0.045 (7) | 0.094 (16)* | |
| HW22 | −0.2234 (18) | 0.269 (4) | −0.223 (6) | 0.070 (13)* |
| Cr1 | 0.01992 (14) | 0.02436 (15) | 0.01528 (14) | −0.00098 (11) | 0.00098 (14) | −0.00316 (16) |
| O9 | 0.0352 (7) | 0.0347 (7) | 0.0187 (6) | −0.0031 (6) | 0.0000 (7) | −0.0086 (10) |
| O3 | 0.0232 (7) | 0.0314 (8) | 0.0241 (8) | −0.0029 (6) | 0.0011 (6) | −0.0063 (7) |
| O1 | 0.0233 (7) | 0.0359 (9) | 0.0200 (7) | −0.0051 (6) | 0.0011 (6) | −0.0079 (6) |
| OW1 | 0.0317 (9) | 0.0281 (8) | 0.0253 (8) | 0.0011 (7) | −0.0057 (7) | −0.0039 (6) |
| O4 | 0.0227 (7) | 0.0314 (7) | 0.0203 (7) | −0.0045 (6) | 0.0026 (5) | −0.0064 (6) |
| OW2 | 0.0336 (8) | 0.0330 (9) | 0.0218 (8) | 0.0075 (7) | 0.0028 (7) | 0.0014 (7) |
| O7 | 0.0371 (8) | 0.0425 (8) | 0.0225 (9) | −0.0094 (7) | 0.0013 (9) | −0.0108 (8) |
| O2 | 0.0229 (7) | 0.0299 (8) | 0.0202 (6) | −0.0049 (6) | −0.0002 (6) | −0.0026 (6) |
| O10 | 0.0303 (8) | 0.0364 (9) | 0.0344 (9) | −0.0051 (7) | 0.0134 (7) | −0.0095 (7) |
| O8 | 0.0265 (9) | 0.0681 (13) | 0.0345 (9) | −0.0075 (9) | 0.0089 (7) | −0.0186 (9) |
| C3 | 0.0259 (10) | 0.0191 (10) | 0.0234 (10) | −0.0012 (8) | 0.0037 (8) | −0.0008 (8) |
| C1 | 0.0266 (10) | 0.0228 (9) | 0.0172 (9) | −0.0029 (8) | −0.0010 (8) | −0.0013 (8) |
| C4 | 0.0267 (10) | 0.0201 (9) | 0.0184 (9) | 0.0004 (8) | −0.0002 (8) | −0.0006 (8) |
| C2 | 0.0250 (10) | 0.0308 (11) | 0.0198 (10) | −0.0021 (9) | 0.0015 (8) | −0.0043 (8) |
| C6 | 0.0454 (16) | 0.075 (2) | 0.067 (3) | −0.0191 (16) | −0.0159 (18) | 0.013 (2) |
| C8 | 0.0456 (14) | 0.0354 (13) | 0.0761 (19) | 0.0017 (11) | −0.001 (2) | 0.0092 (18) |
| N1 | 0.0334 (12) | 0.086 (2) | 0.077 (2) | 0.0050 (13) | −0.0007 (15) | 0.025 (2) |
| N2 | 0.0337 (11) | 0.0442 (14) | 0.147 (3) | 0.0059 (11) | −0.019 (2) | −0.022 (2) |
| C9 | 0.0334 (11) | 0.0362 (12) | 0.0542 (15) | 0.0001 (9) | −0.0069 (14) | −0.0041 (15) |
| C7 | 0.0562 (18) | 0.0569 (18) | 0.105 (3) | 0.0222 (15) | 0.009 (3) | 0.018 (3) |
| OW3 | 0.0304 (10) | 0.0753 (15) | 0.0290 (9) | 0.0014 (10) | −0.0009 (8) | −0.0084 (10) |
| C5 | 0.0484 (15) | 0.0403 (14) | 0.090 (3) | −0.0076 (12) | −0.0156 (19) | −0.002 (2) |
| Cr1—O1 | 1.9636 (15) | C3—C4 | 1.558 (3) |
| Cr1—O4 | 1.9658 (15) | C1—C2 | 1.553 (3) |
| Cr1—O2 | 1.9715 (16) | C6—N1 | 1.330 (5) |
| Cr1—O3 | 1.9810 (16) | C6—C5 | 1.339 (5) |
| Cr1—OW1 | 1.9847 (17) | C6—H6 | 0.96 (4) |
| Cr1—OW2 | 2.0079 (18) | C8—C7 | 1.362 (4) |
| O9—C4 | 1.231 (3) | C8—C9 | 1.396 (4) |
| O3—C3 | 1.289 (3) | C8—H8 | 0.89 (4) |
| O1—C2 | 1.290 (3) | N1—C7 | 1.337 (5) |
| OW1—HW11 | 0.91 (4) | N1—H1 | 1.00 (5) |
| OW1—HW12 | 0.77 (5) | N2—C9 | 1.326 (3) |
| O4—C4 | 1.282 (2) | N2—H2 | 0.92 (4) |
| OW2—HW21 | 0.89 (4) | N2—H3 | 0.88 (4) |
| OW2—HW22 | 0.74 (4) | C9—C5 | 1.407 (4) |
| O7—C1 | 1.222 (3) | C7—H7 | 1.00 (5) |
| O2—C1 | 1.287 (3) | OW3—HW31 | 0.78 (4) |
| O10—C3 | 1.219 (3) | OW3—HW32 | 0.93 (4) |
| O8—C2 | 1.219 (3) | C5—H5 | 0.95 (4) |
| O1—Cr1—O4 | 93.67 (6) | O2—C1—C2 | 114.75 (17) |
| O1—Cr1—O2 | 83.18 (6) | O9—C4—O4 | 125.64 (19) |
| O4—Cr1—O2 | 176.78 (6) | O9—C4—C3 | 120.54 (18) |
| O1—Cr1—O3 | 175.74 (7) | O4—C4—C3 | 113.82 (16) |
| O4—Cr1—O3 | 82.13 (6) | O8—C2—O1 | 125.6 (2) |
| O2—Cr1—O3 | 101.02 (6) | O8—C2—C1 | 120.68 (19) |
| O1—Cr1—OW1 | 90.32 (7) | O1—C2—C1 | 113.75 (18) |
| O4—Cr1—OW1 | 90.73 (7) | N1—C6—C5 | 120.9 (3) |
| O2—Cr1—OW1 | 88.59 (7) | N1—C6—H6 | 117 (2) |
| O3—Cr1—OW1 | 90.43 (7) | C5—C6—H6 | 122 (2) |
| O1—Cr1—OW2 | 89.02 (7) | C7—C8—C9 | 119.8 (3) |
| O4—Cr1—OW2 | 90.45 (7) | C7—C8—H8 | 118 (2) |
| O2—Cr1—OW2 | 90.20 (8) | C9—C8—H8 | 123 (2) |
| O3—Cr1—OW2 | 90.31 (7) | C6—N1—C7 | 121.1 (3) |
| OW1—Cr1—OW2 | 178.68 (8) | C6—N1—H1 | 117 (3) |
| C3—O3—Cr1 | 114.84 (14) | C7—N1—H1 | 122 (3) |
| C2—O1—Cr1 | 114.20 (13) | C9—N2—H2 | 118 (2) |
| Cr1—OW1—HW11 | 112 (2) | C9—N2—H3 | 117 (3) |
| Cr1—OW1—HW12 | 107 (4) | H2—N2—H3 | 123 (4) |
| HW11—OW1—HW12 | 119 (4) | N2—C9—C8 | 121.2 (2) |
| C4—O4—Cr1 | 115.46 (13) | N2—C9—C5 | 122.0 (3) |
| Cr1—OW2—HW21 | 126 (2) | C8—C9—C5 | 116.8 (3) |
| Cr1—OW2—HW22 | 111 (3) | N1—C7—C8 | 120.7 (3) |
| HW21—OW2—HW22 | 100 (4) | N1—C7—H7 | 116 (3) |
| C1—O2—Cr1 | 113.56 (13) | C8—C7—H7 | 123 (3) |
| O10—C3—O3 | 125.7 (2) | HW31—OW3—HW32 | 98 (4) |
| O10—C3—C4 | 120.81 (18) | C6—C5—C9 | 120.6 (3) |
| O3—C3—C4 | 113.51 (17) | C6—C5—H5 | 122 (2) |
| O7—C1—O2 | 126.0 (2) | C9—C5—H5 | 117 (2) |
| O7—C1—C2 | 119.22 (19) |
| H··· | ||||
| OW3—HW31···O8i | 0.78 (4) | 2.06 (4) | 2.823 (3) | 167 (4) |
| OW3—HW32···O8ii | 0.93 (4) | 1.93 (4) | 2.843 (3) | 169 (4) |
| OW2—HW21···O7iii | 0.89 (4) | 1.78 (4) | 2.640 (3) | 161 (3) |
| OW2—HW22···O9iv | 0.74 (4) | 2.07 (4) | 2.784 (3) | 162 (4) |
| OW1—HW11···OW3v | 0.90 (4) | 1.67 (4) | 2.572 (3) | 172 (4) |
| OW1—HW12···O10vi | 0.76 (5) | 2.01 (5) | 2.745 (3) | 162 (5) |
| N2—H2···O10vii | 0.93 (4) | 2.01 (4) | 2.940 (4) | 179 (4) |
| N1—H1···O3 | 1.00 (4) | 2.27 (4) | 3.061 (3) | 135 (4) |
| N1—H1···O9vi | 1.00 (4) | 2.22 (4) | 2.974 (3) | 131 (4) |
Selected bond lengths (Å)
| Cr1—O1 | 1.9636 (15) |
| Cr1—O4 | 1.9658 (15) |
| Cr1—O2 | 1.9715 (16) |
| Cr1—O3 | 1.9810 (16) |
| Cr1—O | 1.9847 (17) |
| Cr1—O | 2.0079 (18) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O | 0.78 (4) | 2.06 (4) | 2.823 (3) | 167 (4) |
| O | 0.93 (4) | 1.93 (4) | 2.843 (3) | 169 (4) |
| O | 0.89 (4) | 1.78 (4) | 2.640 (3) | 161 (3) |
| O | 0.74 (4) | 2.07 (4) | 2.784 (3) | 162 (4) |
| O | 0.90 (4) | 1.67 (4) | 2.572 (3) | 172 (4) |
| O | 0.76 (5) | 2.01 (5) | 2.745 (3) | 162 (5) |
| N2—H2⋯O10vii | 0.93 (4) | 2.01 (4) | 2.940 (4) | 179 (4) |
| N1—H1⋯O3 | 1.00 (4) | 2.27 (4) | 3.061 (3) | 135 (4) |
| N1—H1⋯O9vi | 1.00 (4) | 2.22 (4) | 2.974 (3) | 131 (4) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .