Literature DB >> 22199477

4-Amino-pyridinium trans-diaqua-dioxalatochromate(III) monohydrate.

Ichraf Chérif1, Jawher Abdelhak, Mohamed Faouzi Zid, Ahmed Driss.   

Abstract

In the non-centrosymmetric structure of the title compound, (C(5)H(7)N(2))[Cr(C(2)O(4))(2)(H(2)O)(2)]·H(2)O, the Cr(III) ion has a slightly distorted octa-hedral coordination environment defined by two chelating oxalato ligands in equatorial positions and two water mol-ecules in axial positions. An extensive three-dimensional network of hydrogen bonds involving all the water mol-ecules, the 4-amino-pyridinium cation and some of the oxalate O atoms contributes to the stabilization of the structure. π-π inter-actions between adjacent pyridine rings provide additional stability of the crystal packing, with a closest distance between pyridine mean planes of 3.613 (1) Å.

Entities:  

Year:  2011        PMID: 22199477      PMCID: PMC3238586          DOI: 10.1107/S1600536811044837

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structural characterization of salts containing the [Cr(C2O4)2(H2O)2]− anion with various counter-cations, see: Bélombé et al. (2009 ▶); Nenwa et al. (2010 ▶). For oxalate coord­ination modes, see: Tang et al. (2002 ▶); Martak et al. (2009 ▶); Hernández-Molina et al. (2001 ▶); Zhao et al. (2004 ▶). For C—O distances in oxalate anions, see: Marinescu et al. (2000 ▶). For geometric parameters of the 4-amino­pyridinium cation, see: Fun et al. (2008 ▶, 2009 ▶, 2010 ▶); Jebas et al. (2009 ▶); Quah et al. (2008 ▶); Ramesh et al. (2010 ▶); Rotondo et al. (2009 ▶); Pan et al. (2008 ▶). For discussion of hydrogen bonding, see: Blessing (1986 ▶); Brown (1976 ▶).

Experimental

Crystal data

(C5H7N2)[Cr(C2O4)2(H2O)2H2O M = 377.21 Orthorhombic, a = 21.102 (4) Å b = 9.487 (3) Å c = 7.226 (2) Å V = 1446.7 (7) Å3 Z = 4 Mo Kα radiation μ = 0.85 mm−1 T = 298 K 0.54 × 0.18 × 0.12 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.832, T max = 0.903 3729 measured reflections 3150 independent reflections 2857 reflections with I > 2σ(I) R int = 0.017 2 standard reflections every 120 min intensity decay: 2.9%

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.066 S = 1.04 3150 reflections 261 parameters 1 restraint All H-atom parameters refined Δρmax = 0.30 e Å−3 Δρmin = −0.31 e Å−3 Absolute structure: Flack (1983 ▶), 1447 Friedel pairs Flack parameter: 0.000 (16) Data collection: CAD-4 EXPRESS (Duisenberg, 1992 ▶; Macíček & Yordanov, 1992 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811044837/wm2545sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044837/wm2545Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C5H7N2)[Cr(C2O4)2(H2O)2]·H2OF(000) = 772
Mr = 377.21Dx = 1.732 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 25 reflections
a = 21.102 (4) Åθ = 10–15°
b = 9.487 (3) ŵ = 0.85 mm1
c = 7.226 (2) ÅT = 298 K
V = 1446.7 (7) Å3Prism, violet
Z = 40.54 × 0.18 × 0.12 mm
Enraf–Nonius CAD-4 diffractometer2857 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.017
graphiteθmax = 27.0°, θmin = 2.4°
ω/2θ scansh = −26→1
Absorption correction: ψ scan (North et al., 1968)k = −1→12
Tmin = 0.832, Tmax = 0.903l = −9→9
3729 measured reflections2 standard reflections every 120 min
3150 independent reflections intensity decay: 2.9%
Refinement on F2Hydrogen site location: difference Fourier map
Least-squares matrix: fullAll H-atom parameters refined
R[F2 > 2σ(F2)] = 0.025w = 1/[σ2(Fo2) + (0.0364P)2 + 0.1566P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.066(Δ/σ)max < 0.001
S = 1.04Δρmax = 0.30 e Å3
3150 reflectionsΔρmin = −0.31 e Å3
261 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.0022 (7)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1447 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.000 (16)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cr1−0.196274 (13)0.09444 (3)−0.00116 (5)0.01985 (9)
O9−0.19814 (7)0.26620 (15)0.5002 (3)0.0295 (3)
O3−0.27673 (7)0.09078 (16)0.1400 (2)0.0262 (3)
O1−0.11408 (7)0.10787 (17)−0.1273 (2)0.0264 (3)
OW1−0.17053 (9)−0.08746 (18)0.1118 (2)0.0283 (3)
O4−0.16685 (7)0.19731 (16)0.2188 (2)0.0248 (3)
OW2−0.22205 (8)0.27650 (18)−0.1212 (2)0.0295 (3)
O7−0.17687 (8)−0.09782 (17)−0.4830 (3)0.0340 (4)
O2−0.22078 (7)−0.00965 (16)−0.2262 (2)0.0243 (3)
O10−0.31987 (7)0.17303 (18)0.4006 (2)0.0337 (4)
O8−0.06261 (8)0.0179 (2)−0.3698 (3)0.0430 (5)
C3−0.27494 (10)0.1550 (2)0.2972 (3)0.0228 (4)
C1−0.17435 (10)−0.0316 (2)−0.3382 (3)0.0222 (4)
C4−0.20797 (10)0.2123 (2)0.3479 (3)0.0218 (4)
C2−0.11043 (10)0.0354 (2)−0.2779 (3)0.0252 (4)
C6−0.42595 (16)0.1102 (4)0.0242 (6)0.0625 (10)
C8−0.51027 (14)−0.1061 (3)0.0042 (7)0.0524 (7)
N1−0.40576 (12)−0.0224 (3)0.0161 (6)0.0657 (8)
N2−0.59497 (12)0.0580 (3)0.0089 (8)0.0750 (10)
C9−0.53327 (11)0.0317 (3)0.0117 (5)0.0413 (5)
C7−0.44661 (16)−0.1296 (4)0.0020 (8)0.0726 (10)
OW3−0.06036 (9)0.9143 (3)0.2640 (3)0.0449 (5)
C5−0.48794 (15)0.1402 (3)0.0211 (7)0.0597 (8)
H8−0.5357 (18)−0.181 (4)0.003 (6)0.079 (11)*
H2−0.6222 (18)−0.014 (4)−0.026 (6)0.076 (12)*
H1−0.359 (2)−0.038 (5)0.028 (7)0.098 (14)*
HW31−0.0613 (16)0.955 (4)0.358 (6)0.047 (10)*
HW21−0.2581 (18)0.323 (4)−0.100 (5)0.068 (11)*
HW11−0.1303 (19)−0.085 (4)0.155 (5)0.058 (10)*
H6−0.3942 (19)0.183 (4)0.031 (6)0.079 (12)*
HW32−0.022 (2)0.948 (4)0.220 (6)0.077 (12)*
H5−0.5032 (19)0.233 (4)0.043 (5)0.077 (12)*
H3−0.606 (2)0.147 (5)0.010 (7)0.094 (13)*
H7−0.428 (2)−0.226 (5)0.001 (8)0.110 (15)*
HW12−0.180 (2)−0.146 (5)0.045 (7)0.094 (16)*
HW22−0.2234 (18)0.269 (4)−0.223 (6)0.070 (13)*
U11U22U33U12U13U23
Cr10.01992 (14)0.02436 (15)0.01528 (14)−0.00098 (11)0.00098 (14)−0.00316 (16)
O90.0352 (7)0.0347 (7)0.0187 (6)−0.0031 (6)0.0000 (7)−0.0086 (10)
O30.0232 (7)0.0314 (8)0.0241 (8)−0.0029 (6)0.0011 (6)−0.0063 (7)
O10.0233 (7)0.0359 (9)0.0200 (7)−0.0051 (6)0.0011 (6)−0.0079 (6)
OW10.0317 (9)0.0281 (8)0.0253 (8)0.0011 (7)−0.0057 (7)−0.0039 (6)
O40.0227 (7)0.0314 (7)0.0203 (7)−0.0045 (6)0.0026 (5)−0.0064 (6)
OW20.0336 (8)0.0330 (9)0.0218 (8)0.0075 (7)0.0028 (7)0.0014 (7)
O70.0371 (8)0.0425 (8)0.0225 (9)−0.0094 (7)0.0013 (9)−0.0108 (8)
O20.0229 (7)0.0299 (8)0.0202 (6)−0.0049 (6)−0.0002 (6)−0.0026 (6)
O100.0303 (8)0.0364 (9)0.0344 (9)−0.0051 (7)0.0134 (7)−0.0095 (7)
O80.0265 (9)0.0681 (13)0.0345 (9)−0.0075 (9)0.0089 (7)−0.0186 (9)
C30.0259 (10)0.0191 (10)0.0234 (10)−0.0012 (8)0.0037 (8)−0.0008 (8)
C10.0266 (10)0.0228 (9)0.0172 (9)−0.0029 (8)−0.0010 (8)−0.0013 (8)
C40.0267 (10)0.0201 (9)0.0184 (9)0.0004 (8)−0.0002 (8)−0.0006 (8)
C20.0250 (10)0.0308 (11)0.0198 (10)−0.0021 (9)0.0015 (8)−0.0043 (8)
C60.0454 (16)0.075 (2)0.067 (3)−0.0191 (16)−0.0159 (18)0.013 (2)
C80.0456 (14)0.0354 (13)0.0761 (19)0.0017 (11)−0.001 (2)0.0092 (18)
N10.0334 (12)0.086 (2)0.077 (2)0.0050 (13)−0.0007 (15)0.025 (2)
N20.0337 (11)0.0442 (14)0.147 (3)0.0059 (11)−0.019 (2)−0.022 (2)
C90.0334 (11)0.0362 (12)0.0542 (15)0.0001 (9)−0.0069 (14)−0.0041 (15)
C70.0562 (18)0.0569 (18)0.105 (3)0.0222 (15)0.009 (3)0.018 (3)
OW30.0304 (10)0.0753 (15)0.0290 (9)0.0014 (10)−0.0009 (8)−0.0084 (10)
C50.0484 (15)0.0403 (14)0.090 (3)−0.0076 (12)−0.0156 (19)−0.002 (2)
Cr1—O11.9636 (15)C3—C41.558 (3)
Cr1—O41.9658 (15)C1—C21.553 (3)
Cr1—O21.9715 (16)C6—N11.330 (5)
Cr1—O31.9810 (16)C6—C51.339 (5)
Cr1—OW11.9847 (17)C6—H60.96 (4)
Cr1—OW22.0079 (18)C8—C71.362 (4)
O9—C41.231 (3)C8—C91.396 (4)
O3—C31.289 (3)C8—H80.89 (4)
O1—C21.290 (3)N1—C71.337 (5)
OW1—HW110.91 (4)N1—H11.00 (5)
OW1—HW120.77 (5)N2—C91.326 (3)
O4—C41.282 (2)N2—H20.92 (4)
OW2—HW210.89 (4)N2—H30.88 (4)
OW2—HW220.74 (4)C9—C51.407 (4)
O7—C11.222 (3)C7—H71.00 (5)
O2—C11.287 (3)OW3—HW310.78 (4)
O10—C31.219 (3)OW3—HW320.93 (4)
O8—C21.219 (3)C5—H50.95 (4)
O1—Cr1—O493.67 (6)O2—C1—C2114.75 (17)
O1—Cr1—O283.18 (6)O9—C4—O4125.64 (19)
O4—Cr1—O2176.78 (6)O9—C4—C3120.54 (18)
O1—Cr1—O3175.74 (7)O4—C4—C3113.82 (16)
O4—Cr1—O382.13 (6)O8—C2—O1125.6 (2)
O2—Cr1—O3101.02 (6)O8—C2—C1120.68 (19)
O1—Cr1—OW190.32 (7)O1—C2—C1113.75 (18)
O4—Cr1—OW190.73 (7)N1—C6—C5120.9 (3)
O2—Cr1—OW188.59 (7)N1—C6—H6117 (2)
O3—Cr1—OW190.43 (7)C5—C6—H6122 (2)
O1—Cr1—OW289.02 (7)C7—C8—C9119.8 (3)
O4—Cr1—OW290.45 (7)C7—C8—H8118 (2)
O2—Cr1—OW290.20 (8)C9—C8—H8123 (2)
O3—Cr1—OW290.31 (7)C6—N1—C7121.1 (3)
OW1—Cr1—OW2178.68 (8)C6—N1—H1117 (3)
C3—O3—Cr1114.84 (14)C7—N1—H1122 (3)
C2—O1—Cr1114.20 (13)C9—N2—H2118 (2)
Cr1—OW1—HW11112 (2)C9—N2—H3117 (3)
Cr1—OW1—HW12107 (4)H2—N2—H3123 (4)
HW11—OW1—HW12119 (4)N2—C9—C8121.2 (2)
C4—O4—Cr1115.46 (13)N2—C9—C5122.0 (3)
Cr1—OW2—HW21126 (2)C8—C9—C5116.8 (3)
Cr1—OW2—HW22111 (3)N1—C7—C8120.7 (3)
HW21—OW2—HW22100 (4)N1—C7—H7116 (3)
C1—O2—Cr1113.56 (13)C8—C7—H7123 (3)
O10—C3—O3125.7 (2)HW31—OW3—HW3298 (4)
O10—C3—C4120.81 (18)C6—C5—C9120.6 (3)
O3—C3—C4113.51 (17)C6—C5—H5122 (2)
O7—C1—O2126.0 (2)C9—C5—H5117 (2)
O7—C1—C2119.22 (19)
D—H···AD—HH···AD···AD—H···A
OW3—HW31···O8i0.78 (4)2.06 (4)2.823 (3)167 (4)
OW3—HW32···O8ii0.93 (4)1.93 (4)2.843 (3)169 (4)
OW2—HW21···O7iii0.89 (4)1.78 (4)2.640 (3)161 (3)
OW2—HW22···O9iv0.74 (4)2.07 (4)2.784 (3)162 (4)
OW1—HW11···OW3v0.90 (4)1.67 (4)2.572 (3)172 (4)
OW1—HW12···O10vi0.76 (5)2.01 (5)2.745 (3)162 (5)
N2—H2···O10vii0.93 (4)2.01 (4)2.940 (4)179 (4)
N1—H1···O31.00 (4)2.27 (4)3.061 (3)135 (4)
N1—H1···O9vi1.00 (4)2.22 (4)2.974 (3)131 (4)
Table 1

Selected bond lengths (Å)

Cr1—O11.9636 (15)
Cr1—O41.9658 (15)
Cr1—O21.9715 (16)
Cr1—O31.9810 (16)
Cr1—OW11.9847 (17)
Cr1—OW22.0079 (18)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
OW3—HW31⋯O8i0.78 (4)2.06 (4)2.823 (3)167 (4)
OW3—HW32⋯O8ii0.93 (4)1.93 (4)2.843 (3)169 (4)
OW2—HW21⋯O7iii0.89 (4)1.78 (4)2.640 (3)161 (3)
OW2—HW22⋯O9iv0.74 (4)2.07 (4)2.784 (3)162 (4)
OW1—HW11⋯OW3v0.90 (4)1.67 (4)2.572 (3)172 (4)
OW1—HW12⋯O10vi0.76 (5)2.01 (5)2.745 (3)162 (5)
N2—H2⋯O10vii0.93 (4)2.01 (4)2.940 (4)179 (4)
N1—H1⋯O31.00 (4)2.27 (4)3.061 (3)135 (4)
N1—H1⋯O9vi1.00 (4)2.22 (4)2.974 (3)131 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  10 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-Amino-pyridinium 4-nitro-benzoate 4-nitro-benzoic acid.

Authors:  Ching Kheng Quah; Samuel Robinson Jebas; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-06

3.  Bis(4-amino-pyridinium) bis(hydrogen oxalate) monohydrate.

Authors:  Hoong-Kun Fun; Jain John; Samuel Robinson Jebas; T Balasubramanian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-14

4.  catena-Poly[bis-(4-amino-pyridinium) [[tetra-aqua-nickel(II)]-μ-benzene-1,2,4,5-tetra-carboxyl-ato] dihydrate].

Authors:  Archimede Rotondo; Giuseppe Bruno; Fabio Messina; Francesco Nicoló
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-12

5.  Bis(4-amino-pyridinium) bis-(oxalato-κO,O')cuprate(II) dihydrate.

Authors:  Zi-Cai Pan; Kou-Lin Zhang; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-18

6.  4-Amino-pyridinium 4-amino-benzene-sulfonate 4-ammonio-benzene-sulfonate monohydrate.

Authors:  Hoong-Kun Fun; Samuel Robinson Jebas; A Sinthiya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-12

7.  4-Amino-pyridinium 4-carb-oxy-butano-ate.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; Venkatachalam Rajakannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-24

8.  4-Amino-pyridinium picrate.

Authors:  P Ramesh; R Akalya; A Chandramohan; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-31

9.  4-(Dimethyl-amino)-pyridinium trans-diaqua-bis-[oxalato(2-)-κO,O]chromate(III).

Authors:  Justin Nenwa; Michel M Belombe; Jean Ngoune; Boniface P T Fokwa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-13

10.  Bis(4-amino-pyridinium) tetra-chlorido-cobaltate(II).

Authors:  Samuel Robinson Jebas; A Sinthiya; B Ravindran Durai Nayagam; Dieter Schollmeyer; S Alfred Cecil Raj
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-18
  10 in total
  9 in total

1.  2-Amino-5-chloro-pyridinium cis-diaqua-dioxalatochromate(III) sesquihydrate.

Authors:  Ichraf Chérif; Jawher Abdelhak; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-26

2.  3-Amino-pyridinium trans-diaqua-dioxalato-chromate(III).

Authors:  Ichraf Chérif; Mohamed Faouzi Zid; Malika El-Ghozzi; Daniel Avignant
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13

3.  Crystal structure of 4-(di-methyl-amino)-pyridinium cis-di-aqua-bis-(oxalato-κ(2) O,O')ferrate(III) hemihydrate.

Authors:  Edith Dimitri Djomo; Frédéric Capet; Justin Nenwa; Michel M Bélombé; Michel Foulon
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-07-15

4.  Imidazolium trans-di-aqua-dioxalato-chromate(III) dihydrate.

Authors:  Ichraf Chérif; Jawher Abdelhak; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-16

5.  Crystal structure and spectroscopic analysis of a new oxalate-bridged Mn(II) compound: catena-poly[guanidinium [[aqua-chlorido-manganese(II)]-μ2-oxalato-κ(4) O (1),O (2):O (1'),O (2')] monohydrate].

Authors:  Hiba Sehimi; Ichraf Chérif; Mohamed Faouzi Zid
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-04-26

6.  2-Amino-pyridinium trans-diaqua-bis-(oxalato-κ(2)O,O)chromate(III).

Authors:  Justin Nenwa; Gouet Bebga; Signé Martin; Michel M Bélombé; Mohammed Mbarki; Boniface P T Fokwa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06

7.  Pyridinium cis-diaqua-bis-(oxalato-κ(2)O,O')chromate(III).

Authors:  Justin Nenwa; Olivier Befolo; Bebga Gouet; Mohammed Mbarki; Boniface P T Fokwa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-31

8.  Pyridinium trans-di-aqua-bis-[oxalato(2-)-κ(2) O (1),O (2)]chromate(III) urea monosolvate.

Authors:  Gouet Bebga; Martin Signé; Justin Nenwa; Mohammed Mbarki; Boniface P T Fokwa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-09-28

9.  2-Amino-6-methyl-pyridinium trans-di-aqua-dioxalatochromate(III) monohydrate.

Authors:  Rihab Dridi; Saoussen Namouchi Cherni; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-10
  9 in total

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