Literature DB >> 21201092

4-Amino-pyridinium 4-nitro-benzoate 4-nitro-benzoic acid.

Ching Kheng Quah1, Samuel Robinson Jebas, Hoong-Kun Fun.   

Abstract

The asymmetric unit of the title compound, C(5)H(7)N(2) (+)·C(7)H(4)NO(4) (-)·C(7)H(5)NO(4), consists of an amino-pyridinium cation, a 4-nitro-benzoate anion and a neutral 4-nitro-benzoic acid mol-ecule. The pyridine ring forms dihedral angles of 64.70 (5)° and 70.37 (5)°, respectively, with the benzene rings of 4-nitro-benzoic acid and 4-nitro-benzoate. In the crystal structure, the cations, anions and the neutral 4-nitro-benzoic acid mol-ecules are linked by O-H⋯O and N-H⋯O hydrogen bonds, forming a two-dimensional network parallel to (001). Adjacent networks are cross-linked via C-H⋯O hydrogen bonds and π-π stacking inter-actions [centroid-centroid distances 3.6339 (6) and 3.6566 (6) Å].

Entities:  

Year:  2008        PMID: 21201092      PMCID: PMC2959422          DOI: 10.1107/S1600536808027761

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 4-amino­pyridine, see: Judge et al. (2006 ▶); Schwid et al. (1997 ▶); Strupp et al. (2004 ▶). For related structures, see: Chao & Schempp (1977 ▶); Anderson et al. (2005 ▶); Andrau & White, (2003 ▶); Bhattacharya et al. (1994 ▶); Karle et al. (2003 ▶).

Experimental

Crystal data

C5H7N2 +·C7H4NO4 −·C7H5NO4 M = 428.36 Triclinic, a = 6.4561 (1) Å b = 6.8598 (1) Å c = 20.9055 (3) Å α = 85.826 (1)° β = 87.975 (1)° γ = 86.188 (1)° V = 920.92 (2) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 100.0 (1) K 0.40 × 0.36 × 0.29 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.952, T max = 0.965 24945 measured reflections 6647 independent reflections 5169 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.132 S = 1.05 6647 reflections 284 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808027761/ci2664sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808027761/ci2664Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H7N2+·C7H4NO4·C7H5NO4Z = 2
Mr = 428.36F(000) = 444
Triclinic, P1Dx = 1.545 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.4561 (1) ÅCell parameters from 6200 reflections
b = 6.8598 (1) Åθ = 2.2–29.2°
c = 20.9055 (3) ŵ = 0.12 mm1
α = 85.826 (1)°T = 100 K
β = 87.975 (1)°Block, colourless
γ = 86.188 (1)°0.40 × 0.36 × 0.29 mm
V = 920.92 (2) Å3
Bruker SMART APEXII CCD area-detector diffractometer6647 independent reflections
Radiation source: fine-focus sealed tube5169 reflections with I > 2σ(I)
graphiteRint = 0.031
φ and ω scansθmax = 32.5°, θmin = 1.0°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→9
Tmin = 0.952, Tmax = 0.965k = −10→10
24945 measured reflectionsl = −31→31
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0736P)2 + 0.1221P] where P = (Fo2 + 2Fc2)/3
6647 reflections(Δ/σ)max = 0.001
284 parametersΔρmax = 0.43 e Å3
1 restraintΔρmin = −0.39 e Å3
Experimental. The data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1A0.61416 (13)0.64153 (13)0.61139 (4)0.02534 (18)
O1B1.43798 (12)0.64460 (14)1.07244 (4)0.02613 (19)
O2A0.89023 (12)0.63198 (13)0.54960 (4)0.02492 (18)
O2B1.15700 (13)0.66730 (15)1.13139 (4)0.02794 (19)
O3A0.31404 (11)0.97209 (12)0.29069 (4)0.02024 (16)
H1O30.23421.01630.26280.030*
O3B0.89111 (11)0.90736 (11)0.80183 (4)0.01831 (15)
O4A0.02402 (11)0.98398 (11)0.35318 (4)0.01950 (16)
O4B0.59084 (12)0.90329 (13)0.85892 (4)0.02425 (18)
N1A0.70215 (13)0.66162 (13)0.55851 (4)0.01667 (17)
N1B1.24848 (13)0.67136 (13)1.07904 (4)0.01646 (17)
N20.80980 (14)0.30341 (13)0.29153 (4)0.01904 (18)
N30.73597 (13)0.85350 (13)0.20200 (5)0.02020 (18)
H3A0.83540.93090.20220.024*
H3B0.62230.89220.18340.024*
C1A0.24956 (15)0.84572 (14)0.46101 (5)0.01507 (18)
H1AA0.10840.87900.46670.018*
C1B1.11431 (15)0.75402 (14)0.90711 (5)0.01505 (18)
H1BA1.17880.74820.86670.018*
C2A0.36551 (15)0.77640 (14)0.51351 (5)0.01593 (18)
H2AA0.30480.76330.55450.019*
C2B1.22778 (15)0.70459 (14)0.96180 (5)0.01522 (18)
H2BA1.36850.66640.95870.018*
C3B1.12614 (14)0.71350 (14)1.02109 (5)0.01397 (17)
C3A0.57532 (15)0.72731 (14)0.50276 (5)0.01424 (17)
C4A0.67164 (15)0.74110 (15)0.44250 (5)0.01592 (18)
H4AA0.81190.70380.43690.019*
C4B0.91589 (15)0.76542 (14)1.02843 (5)0.01527 (18)
H4BA0.85130.76671.06890.018*
C5A0.55303 (15)0.81214 (15)0.39071 (5)0.01621 (18)
H5AA0.61420.82390.34980.019*
C5B0.80500 (15)0.81538 (14)0.97324 (5)0.01517 (18)
H5BA0.66380.85120.97660.018*
C6A0.34218 (14)0.86598 (14)0.39989 (5)0.01412 (17)
C6B0.90370 (14)0.81237 (14)0.91270 (5)0.01388 (17)
C7A0.21250 (15)0.94696 (14)0.34447 (5)0.01498 (18)
C7B0.78049 (15)0.87820 (14)0.85437 (5)0.01578 (18)
C80.62995 (16)0.35854 (16)0.26207 (5)0.0195 (2)
H8A0.52600.27090.26230.023*
C90.59889 (15)0.54066 (15)0.23204 (5)0.01760 (19)
H9A0.47360.57750.21260.021*
C100.75805 (15)0.67391 (15)0.23052 (5)0.01566 (18)
C110.94501 (15)0.60896 (15)0.26128 (5)0.01670 (19)
H11A1.05380.69140.26110.020*
C120.96496 (16)0.42621 (16)0.29097 (5)0.0186 (2)
H12A1.08770.38490.31130.022*
H1N20.839 (2)0.1892 (15)0.3080 (7)0.029 (4)*
U11U22U33U12U13U23
O1A0.0250 (4)0.0384 (5)0.0118 (4)−0.0024 (3)−0.0008 (3)0.0048 (3)
O1B0.0158 (3)0.0428 (5)0.0191 (4)0.0041 (3)−0.0028 (3)−0.0013 (3)
O2A0.0172 (3)0.0361 (5)0.0207 (4)0.0016 (3)−0.0036 (3)0.0012 (3)
O2B0.0228 (4)0.0485 (5)0.0115 (4)0.0012 (3)0.0006 (3)0.0003 (3)
O3A0.0183 (3)0.0303 (4)0.0116 (3)−0.0013 (3)−0.0025 (3)0.0027 (3)
O3B0.0174 (3)0.0258 (4)0.0114 (3)−0.0009 (3)−0.0003 (3)0.0006 (3)
O4A0.0158 (3)0.0236 (4)0.0182 (4)0.0011 (3)−0.0016 (3)0.0026 (3)
O4B0.0145 (3)0.0368 (5)0.0198 (4)0.0011 (3)−0.0020 (3)0.0071 (3)
N1A0.0179 (4)0.0178 (4)0.0145 (4)−0.0016 (3)−0.0034 (3)−0.0001 (3)
N1B0.0167 (4)0.0194 (4)0.0131 (4)0.0003 (3)−0.0014 (3)−0.0010 (3)
N20.0213 (4)0.0188 (4)0.0161 (4)0.0014 (3)0.0009 (3)0.0017 (3)
N30.0160 (4)0.0212 (4)0.0224 (5)0.0005 (3)−0.0014 (3)0.0045 (3)
C1A0.0146 (4)0.0166 (4)0.0140 (4)−0.0011 (3)−0.0003 (3)−0.0006 (3)
C1B0.0156 (4)0.0177 (4)0.0114 (4)0.0009 (3)0.0001 (3)−0.0004 (3)
C2A0.0172 (4)0.0180 (4)0.0127 (4)−0.0030 (3)0.0005 (3)−0.0001 (3)
C2B0.0139 (4)0.0175 (4)0.0140 (4)0.0009 (3)−0.0001 (3)−0.0010 (3)
C3B0.0151 (4)0.0154 (4)0.0114 (4)−0.0001 (3)−0.0023 (3)−0.0003 (3)
C3A0.0168 (4)0.0143 (4)0.0118 (4)−0.0017 (3)−0.0030 (3)0.0002 (3)
C4A0.0141 (4)0.0193 (4)0.0143 (4)−0.0007 (3)−0.0005 (3)−0.0013 (3)
C4B0.0158 (4)0.0175 (4)0.0125 (4)−0.0018 (3)0.0009 (3)−0.0007 (3)
C5A0.0163 (4)0.0206 (4)0.0117 (4)−0.0015 (3)0.0000 (3)−0.0013 (3)
C5B0.0131 (4)0.0180 (4)0.0142 (4)−0.0005 (3)−0.0002 (3)0.0001 (3)
C6A0.0154 (4)0.0147 (4)0.0125 (4)−0.0018 (3)−0.0021 (3)−0.0006 (3)
C6B0.0143 (4)0.0151 (4)0.0122 (4)−0.0013 (3)−0.0014 (3)0.0005 (3)
C7A0.0173 (4)0.0153 (4)0.0125 (4)−0.0026 (3)−0.0018 (3)0.0002 (3)
C7B0.0157 (4)0.0167 (4)0.0149 (4)−0.0007 (3)−0.0022 (3)−0.0001 (3)
C80.0175 (4)0.0233 (5)0.0178 (5)−0.0023 (4)0.0008 (4)−0.0016 (4)
C90.0138 (4)0.0231 (5)0.0156 (5)−0.0006 (3)−0.0012 (3)−0.0001 (4)
C100.0144 (4)0.0199 (4)0.0123 (4)0.0012 (3)0.0005 (3)−0.0009 (3)
C110.0151 (4)0.0203 (4)0.0148 (4)−0.0004 (3)−0.0020 (3)−0.0015 (4)
C120.0178 (4)0.0232 (5)0.0143 (5)0.0029 (3)−0.0023 (3)−0.0010 (4)
O1A—N1A1.2278 (12)C2A—H2AA0.93
O1B—N1B1.2294 (11)C2B—C3B1.3851 (14)
O2A—N1A1.2276 (11)C2B—H2BA0.93
O2B—N1B1.2244 (12)C3B—C4B1.3863 (13)
O3A—C7A1.2877 (12)C3A—C4A1.3848 (14)
O3A—H1O30.8200C4A—C5A1.3888 (14)
O3B—C7B1.2993 (12)C4A—H4AA0.93
O4A—C7A1.2362 (12)C4B—C5B1.3890 (14)
O4B—C7B1.2263 (12)C4B—H4BA0.93
N1A—C3A1.4743 (12)C5A—C6A1.3969 (13)
N1B—C3B1.4702 (13)C5A—H5AA0.93
N2—C121.3502 (14)C5B—C6B1.3977 (14)
N2—C81.3523 (14)C5B—H5BA0.93
N2—H1N20.844 (9)C6A—C7A1.5049 (13)
N3—C101.3301 (13)C6B—C7B1.5047 (13)
N3—H3A0.86C8—C91.3626 (15)
N3—H3B0.86C8—H8A0.93
C1A—C2A1.3877 (14)C9—C101.4180 (14)
C1A—C6A1.3930 (14)C9—H9A0.93
C1A—H1AA0.93C10—C111.4180 (13)
C1B—C2B1.3888 (13)C11—C121.3580 (15)
C1B—C6B1.3949 (13)C11—H11A0.93
C1B—H1BA0.93C12—H12A0.93
C2A—C3A1.3884 (13)
C7A—O3A—H1O3109.5C3B—C4B—H4BA121.2
O2A—N1A—O1A123.62 (9)C5B—C4B—H4BA121.2
O2A—N1A—C3A118.18 (9)C4A—C5A—C6A120.21 (9)
O1A—N1A—C3A118.20 (8)C4A—C5A—H5AA119.9
O2B—N1B—O1B123.36 (9)C6A—C5A—H5AA119.9
O2B—N1B—C3B118.43 (8)C4B—C5B—C6B120.61 (9)
O1B—N1B—C3B118.20 (9)C4B—C5B—H5BA119.7
C12—N2—C8120.86 (9)C6B—C5B—H5BA119.7
C12—N2—H1N2115.2 (11)C1A—C6A—C5A119.99 (9)
C8—N2—H1N2123.7 (11)C1A—C6A—C7A119.15 (8)
C10—N3—H3A120.0C5A—C6A—C7A120.86 (9)
C10—N3—H3B120.0C1B—C6B—C5B120.08 (9)
H3A—N3—H3B120.0C1B—C6B—C7B121.02 (9)
C2A—C1A—C6A120.74 (9)C5B—C6B—C7B118.88 (8)
C2A—C1A—H1AA119.6O4A—C7A—O3A125.63 (9)
C6A—C1A—H1AA119.6O4A—C7A—C6A119.65 (9)
C2B—C1B—C6B120.04 (9)O3A—C7A—C6A114.72 (8)
C2B—C1B—H1BA120.0O4B—C7B—O3B125.05 (9)
C6B—C1B—H1BA120.0O4B—C7B—C6B120.18 (9)
C1A—C2A—C3A117.70 (9)O3B—C7B—C6B114.75 (8)
C1A—C2A—H2AA121.2N2—C8—C9120.94 (10)
C3A—C2A—H2AA121.2N2—C8—H8A119.5
C3B—C2B—C1B118.35 (9)C9—C8—H8A119.5
C3B—C2B—H2BA120.8C8—C9—C10119.85 (9)
C1B—C2B—H2BA120.8C8—C9—H9A120.1
C2B—C3B—C4B123.20 (9)C10—C9—H9A120.1
C2B—C3B—N1B118.36 (8)N3—C10—C11120.35 (9)
C4B—C3B—N1B118.42 (9)N3—C10—C9122.38 (9)
C4A—C3A—C2A123.18 (9)C11—C10—C9117.27 (9)
C4A—C3A—N1A118.57 (8)C12—C11—C10119.88 (9)
C2A—C3A—N1A118.23 (9)C12—C11—H11A120.1
C3A—C4A—C5A118.16 (9)C10—C11—H11A120.1
C3A—C4A—H4AA120.9N2—C12—C11121.19 (9)
C5A—C4A—H4AA120.9N2—C12—H12A119.4
C3B—C4B—C5B117.67 (9)C11—C12—H12A119.4
C6A—C1A—C2A—C3A−0.39 (14)C4A—C5A—C6A—C1A−0.97 (14)
C6B—C1B—C2B—C3B0.50 (14)C4A—C5A—C6A—C7A178.78 (9)
C1B—C2B—C3B—C4B1.38 (15)C2B—C1B—C6B—C5B−1.98 (14)
C1B—C2B—C3B—N1B−176.79 (9)C2B—C1B—C6B—C7B176.30 (9)
O2B—N1B—C3B—C2B−175.56 (9)C4B—C5B—C6B—C1B1.65 (14)
O1B—N1B—C3B—C2B5.40 (14)C4B—C5B—C6B—C7B−176.66 (9)
O2B—N1B—C3B—C4B6.18 (14)C1A—C6A—C7A—O4A−4.01 (14)
O1B—N1B—C3B—C4B−172.86 (9)C5A—C6A—C7A—O4A176.24 (9)
C1A—C2A—C3A—C4A−1.18 (15)C1A—C6A—C7A—O3A175.76 (8)
C1A—C2A—C3A—N1A177.40 (8)C5A—C6A—C7A—O3A−3.99 (13)
O2A—N1A—C3A—C4A3.87 (13)C1B—C6B—C7B—O4B170.01 (9)
O1A—N1A—C3A—C4A−176.87 (9)C5B—C6B—C7B—O4B−11.69 (14)
O2A—N1A—C3A—C2A−174.77 (9)C1B—C6B—C7B—O3B−11.13 (13)
O1A—N1A—C3A—C2A4.48 (13)C5B—C6B—C7B—O3B167.17 (9)
C2A—C3A—C4A—C5A1.64 (15)C12—N2—C8—C9−1.21 (16)
N1A—C3A—C4A—C5A−176.93 (8)N2—C8—C9—C101.08 (16)
C2B—C3B—C4B—C5B−1.70 (15)C8—C9—C10—N3−179.88 (10)
N1B—C3B—C4B—C5B176.47 (9)C8—C9—C10—C11−0.23 (15)
C3A—C4A—C5A—C6A−0.53 (14)N3—C10—C11—C12179.16 (10)
C3B—C4B—C5B—C6B0.15 (14)C9—C10—C11—C12−0.50 (15)
C2A—C1A—C6A—C5A1.44 (14)C8—N2—C12—C110.45 (16)
C2A—C1A—C6A—C7A−178.30 (9)C10—C11—C12—N20.41 (16)
D—H···AD—HH···AD···AD—H···A
O3A—H1O3···O3Bi0.821.632.4457 (11)170
N3—H3A···O3Bii0.862.142.9977 (12)172
N3—H3B···O4Bi0.862.072.8758 (12)155
N2—H1N2···O4Aiii0.85 (1)1.99 (1)2.7726 (12)153 (1)
C2B—H2BA···O1Biv0.932.523.2187 (13)133
C8—H8A···O3Av0.932.563.4565 (13)161
C12—H12A···O1Avi0.932.553.4427 (13)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3A—H1O3⋯O3Bi0.821.632.4457 (11)170
N3—H3A⋯O3Bii0.862.142.9977 (12)172
N3—H3B⋯O4Bi0.862.072.8758 (12)155
N2—H1N2⋯O4Aiii0.85 (1)1.99 (1)2.7726 (12)153 (1)
C2B—H2BA⋯O1Biv0.932.523.2187 (13)133
C8—H8A⋯O3Av0.932.563.4565 (13)161
C12—H12A⋯O1Avi0.932.553.4427 (13)162

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11

2.  Triethyl-ammonium 4-nitro-benzene-sulfonate.

Authors:  Mohammad T M Al-Dajani; Hassan H Abdallah; Nornisah Mohamed; Ching Kheng Quah; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16

3.  Bis(2-amino-5-bromo-pyridinium) fumarate dihydrate.

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11

4.  2-Amino-5-bromo-pyridine-4-hy-droxy-benzoic acid (1/1).

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

5.  Bis(4-amino-pyridinium) sulfate monohydrate.

Authors:  Ching Kheng Quah; Hoong-Kun Fun; Arun M Isloor; Nishitha Isloor
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11

6.  2-Amino-4-methylpyridinium 2-hy-droxy-3,5-dinitro-benzoate.

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

7.  2-Amino-5-bromo-pyridinium 2-hy-droxy-benzoate.

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31

8.  2-Amino-4-methyl-pyridinium 2-carb-oxy-benzoate.

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

9.  2-Amino-5-methyl-pyridinium 2-hy-droxy-benzoate.

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11

10.  2,4,6-Trimethyl-pyridinium 4-nitro-benzoate-4-nitro-benzoic acid (1/1).

Authors:  Muhammad Athar Abbasi; Kenneth Nazir; Mehmet Akkurt; Islam Ullah Khan; Ghulam Mustafa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27
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