Literature DB >> 23284394

Pyridinium cis-diaqua-bis-(oxalato-κ(2)O,O')chromate(III).

Justin Nenwa1, Olivier Befolo, Bebga Gouet, Mohammed Mbarki, Boniface P T Fokwa.   

Abstract

The title compound, (C(5)H(6)N)[Cr(C(2)O(4))(2)(H(2)O)(2)], contains one protonated pyridine mol-ecule and one [Cr(C(2)O(4))(2)(H(2)O)(2)](-) complex anion in the asymmetric unit. The Cr(III) in the complex anion is coordinated in a distorted octa-hedral environment by two O atoms from two cis water mol-ecules and four O atoms from two chelating oxalate dianions. The crystal packing is stabilized by inter-molecular N-H⋯O(oxalate) and O-H⋯O(oxalate) hydrogen bonds and by π-π stacking inter-actions (centroid-centroid distance = 3.602 Å) between pyridine rings, thereby building up a three-dimensional network.

Entities:  

Year:  2012        PMID: 23284394      PMCID: PMC3515167          DOI: 10.1107/S1600536812044303

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structural characterization of organic–inorganic salts containing the [Cr(C2O4)2(H2O)2]− anion, see: Bélombé et al. (2009 ▶); Nenwa et al. (2010 ▶, 2012 ▶); Chérif et al. (2011 ▶); Chérif, Abdelhak et al. (2012 ▶); Chérif, Zid et al. (2012 ▶).

Experimental

Crystal data

(C5H6N)[Cr(C2O4)2(H2O)2] M = 344.18 Monoclinic, a = 7.479 (2) Å b = 24.700 (8) Å c = 7.056 (2) Å β = 107.744 (6)° V = 1241.4 (6) Å3 Z = 4 Mo Kα radiation μ = 0.98 mm−1 T = 100 K 0.15 × 0.04 × 0.04 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.862, T max = 0.961 18649 measured reflections 3703 independent reflections 2580 reflections with I > 2σ(I) R int = 0.106

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.160 S = 1.13 3703 reflections 206 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.59 e Å−3 Δρmin = −0.69 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812044303/lr2086sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812044303/lr2086Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C5H6N)[Cr(C2O4)2(H2O)2]F(000) = 700
Mr = 344.18Dx = 1.842 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P_2ybcCell parameters from 3703 reflections
a = 7.479 (2) Åθ = 1.7–30.9°
b = 24.700 (8) ŵ = 0.98 mm1
c = 7.056 (2) ÅT = 100 K
β = 107.744 (6)°Needle, violet
V = 1241.4 (6) Å30.15 × 0.04 × 0.04 mm
Z = 4
Bruker SMART APEX CCD diffractometer3703 independent reflections
Radiation source: fine-focus sealed tube2580 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.106
φ and ω scansθmax = 30.9°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −10→10
Tmin = 0.862, Tmax = 0.961k = −34→33
18649 measured reflectionsl = −9→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.160H atoms treated by a mixture of independent and constrained refinement
S = 1.13w = 1/[σ2(Fo2) + (0.0636P)2] where P = (Fo2 + 2Fc2)/3
3703 reflections(Δ/σ)max = 0.001
206 parametersΔρmax = 0.59 e Å3
5 restraintsΔρmin = −0.69 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cr10.00150 (8)0.67285 (2)0.06297 (8)0.00840 (15)
C11−0.3839 (5)0.67581 (15)−0.0409 (5)0.0119 (7)
C12−0.3217 (5)0.73552 (14)−0.0479 (5)0.0099 (7)
C210.0773 (5)0.61425 (14)−0.2335 (5)0.0110 (7)
C220.1456 (5)0.57906 (15)−0.0428 (5)0.0120 (7)
O11−0.2502 (3)0.64143 (10)0.0020 (4)0.0113 (5)
O12−0.1425 (3)0.74032 (10)−0.0051 (4)0.0105 (5)
O13−0.4367 (4)0.77229 (11)−0.0905 (4)0.0177 (6)
O14−0.5518 (4)0.66425 (11)−0.0766 (4)0.0170 (6)
O210.0065 (3)0.65975 (10)−0.2098 (4)0.0113 (5)
O220.1238 (4)0.60185 (10)0.1125 (4)0.0118 (5)
O230.0948 (4)0.59673 (10)−0.3912 (4)0.0137 (5)
O240.2113 (4)0.53428 (11)−0.0504 (4)0.0186 (6)
OW10.0262 (4)0.67909 (11)0.3493 (4)0.0139 (5)
OW20.2371 (4)0.71532 (11)0.1053 (4)0.0139 (5)
N10.2547 (4)0.48994 (13)−0.3963 (5)0.0148 (6)
H10.20810.5152−0.34190.018*
C20.3312 (6)0.44697 (16)−0.2871 (6)0.0177 (8)
H20.33200.4446−0.15530.021*
C30.2476 (5)0.49522 (15)−0.5870 (6)0.0147 (7)
H30.19270.5256−0.65900.018*
C40.3220 (6)0.45543 (16)−0.6751 (6)0.0172 (8)
H40.31640.4583−0.80820.021*
C50.4083 (5)0.40652 (15)−0.3686 (6)0.0180 (8)
H50.46180.3765−0.29300.022*
C60.4059 (5)0.41073 (16)−0.5641 (6)0.0161 (8)
H60.45990.3839−0.62120.019*
H1B−0.019 (6)0.6988 (17)0.415 (6)0.032 (15)*
H2A0.310 (5)0.721 (2)0.214 (4)0.033 (15)*
H1A0.051 (8)0.6501 (17)0.419 (9)0.06 (2)*
H2B0.296 (6)0.700 (2)0.040 (6)0.06 (2)*
U11U22U33U12U13U23
Cr10.0108 (3)0.0067 (3)0.0083 (3)0.0012 (2)0.0037 (2)0.0006 (2)
C110.0116 (16)0.0135 (17)0.0112 (17)0.0003 (13)0.0043 (13)0.0004 (14)
C120.0122 (16)0.0114 (16)0.0052 (16)0.0005 (13)0.0015 (13)0.0007 (12)
C210.0141 (17)0.0108 (17)0.0102 (17)−0.0011 (13)0.0065 (14)−0.0005 (13)
C220.0157 (17)0.0120 (17)0.0095 (17)0.0011 (13)0.0056 (14)0.0046 (14)
O110.0123 (12)0.0093 (12)0.0129 (13)−0.0006 (9)0.0048 (10)−0.0011 (9)
O120.0116 (12)0.0086 (12)0.0110 (13)0.0004 (9)0.0031 (10)0.0003 (9)
O130.0148 (13)0.0116 (13)0.0250 (16)0.0046 (10)0.0035 (11)0.0026 (11)
O140.0128 (12)0.0175 (14)0.0222 (15)−0.0043 (10)0.0073 (11)−0.0070 (11)
O210.0132 (12)0.0094 (12)0.0123 (13)0.0012 (9)0.0053 (10)−0.0014 (9)
O220.0187 (13)0.0109 (13)0.0074 (12)0.0035 (10)0.0061 (10)0.0021 (10)
O230.0205 (13)0.0112 (13)0.0109 (13)0.0017 (10)0.0069 (10)0.0004 (10)
O240.0351 (16)0.0092 (13)0.0144 (14)0.0103 (11)0.0119 (12)0.0024 (10)
OW10.0217 (14)0.0106 (13)0.0106 (13)0.0050 (11)0.0069 (11)−0.0003 (10)
OW20.0108 (12)0.0163 (14)0.0150 (14)−0.0020 (10)0.0044 (11)−0.0048 (11)
N10.0198 (16)0.0104 (15)0.0167 (16)−0.0004 (12)0.0090 (13)−0.0021 (12)
C20.028 (2)0.0151 (19)0.0117 (18)−0.0035 (16)0.0091 (16)−0.0003 (14)
C30.0166 (18)0.0114 (17)0.0139 (18)−0.0028 (13)0.0013 (14)0.0026 (14)
C40.024 (2)0.0173 (19)0.0100 (18)−0.0015 (15)0.0040 (15)−0.0013 (14)
C50.024 (2)0.0083 (17)0.019 (2)0.0024 (14)0.0037 (16)0.0042 (14)
C60.0199 (19)0.0129 (18)0.017 (2)0.0007 (14)0.0068 (15)−0.0062 (14)
Cr1—O111.959 (3)OW1—H1B0.814 (19)
Cr1—O221.960 (3)OW1—H1A0.86 (5)
Cr1—O121.963 (3)OW2—H2A0.806 (19)
Cr1—O211.963 (3)OW2—H2B0.818 (19)
Cr1—OW11.978 (3)N1—C21.334 (5)
Cr1—OW21.993 (3)N1—C31.337 (5)
C11—O141.237 (4)N1—H10.8600
C11—O111.276 (4)C2—C51.365 (5)
C11—C121.552 (5)C2—H20.9300
C12—O131.224 (4)C3—C41.369 (5)
C12—O121.286 (4)C3—H30.9300
C21—O231.238 (4)C4—C61.388 (5)
C21—O211.275 (4)C4—H40.9300
C21—C221.552 (5)C5—C61.378 (6)
C22—O241.218 (4)C5—H50.9300
C22—O221.285 (4)C6—H60.9300
O11—Cr1—O2292.85 (11)C12—O12—Cr1115.7 (2)
O11—Cr1—O1282.18 (10)C21—O21—Cr1114.0 (2)
O22—Cr1—O12174.30 (11)C22—O22—Cr1114.4 (2)
O11—Cr1—O2191.36 (11)Cr1—OW1—H1B135 (3)
O22—Cr1—O2183.09 (11)Cr1—OW1—H1A117 (4)
O12—Cr1—O2194.19 (11)H1B—OW1—H1A103 (4)
O11—Cr1—OW192.26 (11)Cr1—OW2—H2A123 (4)
O22—Cr1—OW189.69 (11)Cr1—OW2—H2B106 (4)
O12—Cr1—OW193.28 (11)H2A—OW2—H2B107 (3)
O21—Cr1—OW1172.08 (11)C2—N1—C3122.5 (3)
O11—Cr1—OW2171.04 (11)C2—N1—H1118.8
O22—Cr1—OW295.79 (11)C3—N1—H1118.8
O12—Cr1—OW289.07 (11)N1—C2—C5120.1 (4)
O21—Cr1—OW287.33 (11)N1—C2—H2120.0
OW1—Cr1—OW290.17 (12)C5—C2—H2120.0
O14—C11—O11124.7 (3)N1—C3—C4119.4 (3)
O14—C11—C12120.6 (3)N1—C3—H3120.3
O11—C11—C12114.8 (3)C4—C3—H3120.3
O13—C12—O12126.4 (3)C3—C4—C6119.4 (4)
O13—C12—C11121.2 (3)C3—C4—H4120.3
O12—C12—C11112.4 (3)C6—C4—H4120.3
O23—C21—O21126.0 (3)C2—C5—C6119.2 (4)
O23—C21—C22119.1 (3)C2—C5—H5120.4
O21—C21—C22114.9 (3)C6—C5—H5120.4
O24—C22—O22126.3 (3)C5—C6—C4119.4 (4)
O24—C22—C21120.1 (3)C5—C6—H6120.3
O22—C22—C21113.6 (3)C4—C6—H6120.3
C11—O11—Cr1114.8 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O240.862.102.783 (4)136
N1—H1···O230.862.172.901 (4)143
OW1—H1B···O12i0.81 (2)1.94 (2)2.720 (4)162 (5)
OW1—H1A···O23ii0.86 (5)1.84 (5)2.680 (4)168 (5)
OW2—H2A···O13iii0.81 (2)1.98 (3)2.732 (4)154 (4)
OW2—H2B···O14iv0.82 (2)1.83 (2)2.639 (4)173 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O240.862.102.783 (4)136
N1—H1⋯O230.862.172.901 (4)143
OW1—H1B⋯O12i 0.81 (2)1.94 (2)2.720 (4)162 (5)
OW1—H1A⋯O23ii 0.86 (5)1.84 (5)2.680 (4)168 (5)
OW2—H2A⋯O13iii 0.81 (2)1.98 (3)2.732 (4)154 (4)
OW2—H2B⋯O14iv 0.82 (2)1.83 (2)2.639 (4)173 (5)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-(Dimethyl-amino)-pyridinium trans-diaqua-bis-[oxalato(2-)-κO,O]chromate(III).

Authors:  Justin Nenwa; Michel M Belombe; Jean Ngoune; Boniface P T Fokwa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-13

3.  4-Amino-pyridinium trans-diaqua-dioxalatochromate(III) monohydrate.

Authors:  Ichraf Chérif; Jawher Abdelhak; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-02

4.  2-Amino-5-chloro-pyridinium cis-diaqua-dioxalatochromate(III) sesquihydrate.

Authors:  Ichraf Chérif; Jawher Abdelhak; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-26

5.  3-Amino-pyridinium trans-diaqua-dioxalato-chromate(III).

Authors:  Ichraf Chérif; Mohamed Faouzi Zid; Malika El-Ghozzi; Daniel Avignant
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13

6.  2-Amino-pyridinium trans-diaqua-bis-(oxalato-κ(2)O,O)chromate(III).

Authors:  Justin Nenwa; Gouet Bebga; Signé Martin; Michel M Bélombé; Mohammed Mbarki; Boniface P T Fokwa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06
  6 in total
  1 in total

1.  Crystal structure of 4-(di-methyl-amino)-pyridinium cis-di-aqua-bis-(oxalato-κ(2) O,O')ferrate(III) hemihydrate.

Authors:  Edith Dimitri Djomo; Frédéric Capet; Justin Nenwa; Michel M Bélombé; Michel Foulon
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-07-15
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.