Literature DB >> 21577731

catena-Poly[bis-(4-amino-pyridinium) [[tetra-aqua-nickel(II)]-μ-benzene-1,2,4,5-tetra-carboxyl-ato] dihydrate].

Archimede Rotondo1, Giuseppe Bruno, Fabio Messina, Francesco Nicoló.   

Abstract

The asymmetric unit of the title compound, {(C(5)H(7)N(2))(2)[Ni(C(10)H(2)O(8))(H(2)O)(4)]·2H(2)O}(n), contains an Ni(II) atom, two water mol-ecules of coordination, one half of a benzene-1,2,4,5-tetra-carboxyl-ate (btec) anionic ligand, one 4-amino-pyridinium cation (papy) and an uncoordinated water mol-ecule. The metal center lies on an inversion center and adopts an octa-hedral geometry with the carboxyl-ate groups tilted out of the mean plane formed by the btec. In the crystal, mol-ecules are linked into one-dimensional coordination polymers running along the ac diagonal. The crystal structure is consolidated by N-H⋯O and O-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21577731      PMCID: PMC2970276          DOI: 10.1107/S1600536809034746

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to 1,2,4,5-benzene-tetra­carboxyl­ate, see: Du et al. (2007 ▶); Fang et al. (2008 ▶); Loiseau et al. (2005 ▶); Ruiz-Pérez et al. (2004 ▶); Stephenson & Hardie (2006 ▶); Wang et al. (2005 ▶). For related structures, see: Majumder et al. (2006 ▶).

Experimental

Crystal data

(C5H7N2)2[Ni(C10H2O8)(H2O)4]·2H2O M = 607.17 Triclinic, a = 7.2115 (1) Å b = 9.3470 (1) Å c = 10.6322 (2) Å α = 112.720 (1)° β = 108.830 (1)° γ = 95.582 (1)° V = 605.13 (2) Å3 Z = 1 Mo Kα radiation μ = 0.88 mm−1 T = 296 K 0.50 × 0.34 × 0.27 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.729, T max = 0.785 14068 measured reflections 2219 independent reflections 2203 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.020 wR(F 2) = 0.055 S = 1.07 2219 reflections 187 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809034746/pv2183sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809034746/pv2183Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C5H7N2)2[Ni(C10H2O8)(H2O)4]·2H2OZ = 1
Mr = 607.17F(000) = 316
Triclinic, P1Dx = 1.666 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.2115 (1) ÅCell parameters from 9901 reflections
b = 9.3470 (1) Åθ = 2.4–31.7°
c = 10.6322 (2) ŵ = 0.88 mm1
α = 112.720 (1)°T = 296 K
β = 108.830 (1)°Block, green
γ = 95.582 (1)°0.5 × 0.34 × 0.27 mm
V = 605.13 (2) Å3
Bruker APEXII CCD diffractometer2219 independent reflections
graphite2203 reflections with I > 2σ(I)
Detector resolution: 9 pixels mm-1Rint = 0.023
φ and ω scansθmax = 25.4°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −8→8
Tmin = 0.729, Tmax = 0.785k = −11→11
14068 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.020Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.055H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0286P)2 + 0.2508P] where P = (Fo2 + 2Fc2)/3
2219 reflections(Δ/σ)max = 0.001
187 parametersΔρmax = 0.3 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10010.01722 (8)
C10.42401 (18)0.39111 (14)1.04216 (14)0.0178 (2)
C20.43069 (18)0.33541 (15)0.90138 (14)0.0180 (2)
C30.50542 (18)0.44605 (15)0.86090 (14)0.0188 (3)
H30.50830.41060.76710.023*
C40.32515 (19)0.28168 (14)1.08810 (14)0.0186 (3)
C50.36527 (19)0.15800 (15)0.79578 (14)0.0210 (3)
O10.14545 (13)0.20052 (10)1.00054 (10)0.02033 (19)
O20.42075 (15)0.28245 (12)1.20874 (11)0.0319 (2)
O30.2586 (2)0.11600 (13)0.66391 (12)0.0458 (3)
O40.42488 (15)0.06463 (11)0.84885 (11)0.0282 (2)
N60.9034 (2)0.28646 (18)1.77371 (15)0.0397 (3)
H60.93970.2441.83360.048*
C70.9976 (2)0.4382 (2)1.81496 (17)0.0379 (4)
H71.10040.49621.90870.046*
C80.9467 (2)0.50850 (18)1.72376 (16)0.0318 (3)
H81.01260.61431.75540.038*
C90.7933 (2)0.42135 (17)1.58003 (15)0.0263 (3)
C100.6936 (2)0.26379 (18)1.54195 (17)0.0323 (3)
H100.58740.20341.45020.039*
C110.7530 (3)0.2008 (2)1.6396 (2)0.0385 (4)
H110.68830.09631.61310.046*
N120.7487 (2)0.48454 (16)1.48525 (14)0.0366 (3)
H12A0.81350.58011.51090.044*
H12B0.65490.431.39810.044*
O1W0.18379 (14)0.05465 (11)1.21508 (10)0.0249 (2)
H1WA0.27670.12941.22940.037*
H1WB0.13530.09311.28060.037*
O2W−0.21078 (14)0.11312 (11)1.06521 (11)0.0250 (2)
H2WA−0.25570.07021.11040.038*
H2WB−0.31210.10880.99370.038*
O3W0.05029 (18)0.17265 (13)0.43489 (12)0.0358 (3)
H3WA0.12480.16930.51340.054*
H3WB−0.06490.10830.40160.054*
U11U22U33U12U13U23
Ni10.01682 (13)0.01646 (12)0.01797 (13)−0.00033 (9)0.00487 (9)0.00990 (9)
C10.0150 (6)0.0182 (6)0.0194 (6)0.0003 (5)0.0045 (5)0.0102 (5)
C20.0159 (6)0.0171 (6)0.0190 (6)0.0011 (5)0.0046 (5)0.0085 (5)
C30.0188 (6)0.0199 (6)0.0172 (6)0.0013 (5)0.0067 (5)0.0088 (5)
C40.0212 (6)0.0155 (6)0.0190 (6)0.0018 (5)0.0079 (5)0.0082 (5)
C50.0220 (6)0.0179 (6)0.0217 (6)0.0010 (5)0.0090 (5)0.0079 (5)
O10.0182 (4)0.0195 (4)0.0217 (4)−0.0017 (3)0.0049 (4)0.0115 (4)
O20.0300 (5)0.0348 (6)0.0243 (5)−0.0091 (4)−0.0002 (4)0.0193 (4)
O30.0665 (8)0.0240 (5)0.0223 (5)0.0006 (5)−0.0037 (5)0.0059 (4)
O40.0328 (5)0.0210 (5)0.0337 (5)0.0077 (4)0.0129 (4)0.0150 (4)
N60.0492 (8)0.0541 (9)0.0376 (8)0.0307 (7)0.0234 (7)0.0323 (7)
C70.0351 (8)0.0506 (10)0.0244 (7)0.0195 (7)0.0084 (6)0.0136 (7)
C80.0294 (8)0.0299 (7)0.0264 (7)0.0065 (6)0.0061 (6)0.0073 (6)
C90.0253 (7)0.0269 (7)0.0251 (7)0.0072 (6)0.0084 (6)0.0111 (6)
C100.0324 (8)0.0284 (7)0.0303 (8)0.0030 (6)0.0082 (6)0.0120 (6)
C110.0470 (10)0.0332 (8)0.0481 (10)0.0153 (7)0.0256 (8)0.0239 (7)
N120.0378 (7)0.0321 (7)0.0301 (7)−0.0024 (6)−0.0001 (6)0.0176 (6)
O1W0.0239 (5)0.0274 (5)0.0216 (5)−0.0017 (4)0.0062 (4)0.0132 (4)
O2W0.0231 (5)0.0244 (5)0.0301 (5)0.0040 (4)0.0106 (4)0.0149 (4)
O3W0.0413 (6)0.0364 (6)0.0328 (6)0.0062 (5)0.0154 (5)0.0185 (5)
Ni1—O12.054 (1)N6—H60.86
Ni1—O1i2.054 (1)C7—C81.347 (2)
Ni1—O1W2.063 (1)C7—H70.93
Ni1—O1Wi2.063 (1)C8—C91.412 (2)
Ni1—O2Wi2.082 (1)C8—H80.93
Ni1—O2W2.082 (1)C9—N121.3249 (19)
C1—C3ii1.3917 (18)C9—C101.413 (2)
C1—C21.4012 (18)C10—C111.357 (2)
C1—C41.5040 (16)C10—H100.93
C2—C31.3894 (17)C11—H110.93
C2—C51.5168 (17)N12—H12A0.86
C3—C1ii1.3917 (18)N12—H12B0.86
C3—H30.93O1W—H1WA0.8491
C4—O21.2416 (16)O1W—H1WB0.8517
C4—O11.2673 (16)O2W—H2WA0.8491
C5—O31.2376 (17)O2W—H2WB0.8517
C5—O41.2496 (17)O3W—H3WA0.8491
N6—C111.342 (2)O3W—H3WB0.8517
N6—C71.344 (2)
O1—Ni1—O1i180C4—O1—Ni1124.64 (8)
O1—Ni1—O1W94.96 (4)C11—N6—C7120.39 (14)
O1i—Ni1—O1W85.04 (4)C11—N6—H6119.8
O1—Ni1—O1Wi85.04 (4)C7—N6—H6119.8
O1i—Ni1—O1Wi94.96 (4)N6—C7—C8121.61 (15)
O1W—Ni1—O1Wi180N6—C7—H7119.2
O1—Ni1—O2Wi87.65 (4)C8—C7—H7119.2
O1i—Ni1—O2Wi92.35 (4)C7—C8—C9119.94 (15)
O1W—Ni1—O2Wi87.40 (4)C7—C8—H8120
O1Wi—Ni1—O2Wi92.60 (4)C9—C8—H8120
O1—Ni1—O2W92.35 (4)N12—C9—C8121.08 (14)
O1i—Ni1—O2W87.65 (4)N12—C9—C10122.01 (13)
O1W—Ni1—O2W92.60 (4)C8—C9—C10116.90 (13)
O1Wi—Ni1—O2W87.40 (4)C11—C10—C9119.85 (15)
O2Wi—Ni1—O2W180C11—C10—H10120.1
C3ii—C1—C2120.00 (11)C9—C10—H10120.1
C3ii—C1—C4118.01 (11)N6—C11—C10121.24 (15)
C2—C1—C4121.77 (11)N6—C11—H11119.4
C3—C2—C1118.62 (11)C10—C11—H11119.4
C3—C2—C5119.85 (11)C9—N12—H12A120
C1—C2—C5121.49 (11)C9—N12—H12B120
C2—C3—C1ii121.37 (12)H12A—N12—H12B120
C2—C3—H3119.3Ni1—O1W—H1WA98.6
C1ii—C3—H3119.3Ni1—O1W—H1WB116.7
O2—C4—O1125.75 (11)H1WA—O1W—H1WB107.6
O2—C4—C1118.41 (11)Ni1—O2W—H2WA109.6
O1—C4—C1115.78 (11)Ni1—O2W—H2WB114
O3—C5—O4124.70 (12)H2WA—O2W—H2WB107.6
O3—C5—C2118.15 (12)H3WA—O3W—H3WB107.6
O4—C5—C2117.15 (11)
C3ii—C1—C2—C3−1.1 (2)O2—C4—O1—Ni1−20.66 (18)
C4—C1—C2—C3173.38 (11)C1—C4—O1—Ni1162.24 (8)
C3ii—C1—C2—C5176.81 (11)O1W—Ni1—O1—C421.65 (10)
C4—C1—C2—C5−8.73 (18)O1Wi—Ni1—O1—C4−158.35 (10)
C1—C2—C3—C1ii1.1 (2)O2Wi—Ni1—O1—C4−65.53 (10)
C5—C2—C3—C1ii−176.83 (11)O2W—Ni1—O1—C4114.47 (10)
C3ii—C1—C4—O2−54.95 (17)C11—N6—C7—C8−0.7 (2)
C2—C1—C4—O2130.48 (13)N6—C7—C8—C9−1.1 (2)
C3ii—C1—C4—O1122.37 (13)C7—C8—C9—N12−176.02 (14)
C2—C1—C4—O1−52.20 (16)C7—C8—C9—C102.8 (2)
C3—C2—C5—O3−45.83 (18)N12—C9—C10—C11175.97 (15)
C1—C2—C5—O3136.30 (14)C8—C9—C10—C11−2.9 (2)
C3—C2—C5—O4133.70 (13)C7—N6—C11—C100.7 (2)
C1—C2—C5—O4−44.16 (17)C9—C10—C11—N61.2 (2)
D—H···AD—HH···AD···AD—H···A
N6—H6···O1iii0.862.122.926 (1)156
N12—H12B···O20.862.002.856 (2)171
N12—H12A···O3Wii0.862.193.048 (2)174
O1W—H1WA···O20.851.812.634 (1)163
O1W—H1WB···O3Wiv0.851.852.697 (1)175
O2W—H2WA···O4i0.851.932.750 (1)162
O2W—H2WB···O4v0.851.902.732 (1)165
O3W—H3WA···O30.851.862.694 (2)168
O3W—H3WB···O3vi0.852.122.911 (2)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N6—H6⋯O1i0.862.122.926 (1)156
N12—H12B⋯O20.862.002.856 (2)171
N12—H12A⋯O3Wii0.862.193.048 (2)174
O1W—H1WA⋯O20.851.812.634 (1)163
O1W—H1WB⋯O3Wiii0.851.852.697 (1)175
O2W—H2WA⋯O4iv0.851.932.750 (1)162
O2W—H2WB⋯O4v0.851.902.732 (1)165
O3W—H3WA⋯O30.851.862.694 (2)168
O3W—H3WB⋯O3vi0.852.122.911 (2)154

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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