| Literature DB >> 21577731 |
Archimede Rotondo1, Giuseppe Bruno, Fabio Messina, Francesco Nicoló.
Abstract
The asymmetric unit of the title compound, {(C(5)H(7)N(2))(2)[Ni(C(10)H(2)O(8))(H(2)O)(4)]·2H(2)O}(n), contains an Ni(II) atom, two water mol-ecules of coordination, one half of a benzene-1,2,4,5-tetra-carboxyl-ate (btec) anionic ligand, one 4-amino-pyridinium cation (papy) and an uncoordinated water mol-ecule. The metal center lies on an inversion center and adopts an octa-hedral geometry with the carboxyl-ate groups tilted out of the mean plane formed by the btec. In the crystal, mol-ecules are linked into one-dimensional coordination polymers running along the ac diagonal. The crystal structure is consolidated by N-H⋯O and O-H⋯O hydrogen bonds.Entities:
Year: 2009 PMID: 21577731 PMCID: PMC2970276 DOI: 10.1107/S1600536809034746
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| (C5H7N2)2[Ni(C10H2O8)(H2O)4]·2H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 9901 reflections | |
| θ = 2.4–31.7° | |
| µ = 0.88 mm−1 | |
| α = 112.720 (1)° | |
| β = 108.830 (1)° | Block, green |
| γ = 95.582 (1)° | 0.5 × 0.34 × 0.27 mm |
| Bruker APEXII CCD diffractometer | 2219 independent reflections |
| graphite | 2203 reflections with |
| Detector resolution: 9 pixels mm-1 | |
| φ and ω scans | θmax = 25.4°, θmin = 3.0° |
| Absorption correction: multi-scan ( | |
| 14068 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2219 reflections | (Δ/σ)max = 0.001 |
| 187 parameters | Δρmax = 0.3 e Å−3 |
| 0 restraints | Δρmin = −0.26 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Ni1 | 0 | 0 | 1 | 0.01722 (8) | |
| C1 | 0.42401 (18) | 0.39111 (14) | 1.04216 (14) | 0.0178 (2) | |
| C2 | 0.43069 (18) | 0.33541 (15) | 0.90138 (14) | 0.0180 (2) | |
| C3 | 0.50542 (18) | 0.44605 (15) | 0.86090 (14) | 0.0188 (3) | |
| H3 | 0.5083 | 0.4106 | 0.7671 | 0.023* | |
| C4 | 0.32515 (19) | 0.28168 (14) | 1.08810 (14) | 0.0186 (3) | |
| C5 | 0.36527 (19) | 0.15800 (15) | 0.79578 (14) | 0.0210 (3) | |
| O1 | 0.14545 (13) | 0.20052 (10) | 1.00054 (10) | 0.02033 (19) | |
| O2 | 0.42075 (15) | 0.28245 (12) | 1.20874 (11) | 0.0319 (2) | |
| O3 | 0.2586 (2) | 0.11600 (13) | 0.66391 (12) | 0.0458 (3) | |
| O4 | 0.42488 (15) | 0.06463 (11) | 0.84885 (11) | 0.0282 (2) | |
| N6 | 0.9034 (2) | 0.28646 (18) | 1.77371 (15) | 0.0397 (3) | |
| H6 | 0.9397 | 0.244 | 1.8336 | 0.048* | |
| C7 | 0.9976 (2) | 0.4382 (2) | 1.81496 (17) | 0.0379 (4) | |
| H7 | 1.1004 | 0.4962 | 1.9087 | 0.046* | |
| C8 | 0.9467 (2) | 0.50850 (18) | 1.72376 (16) | 0.0318 (3) | |
| H8 | 1.0126 | 0.6143 | 1.7554 | 0.038* | |
| C9 | 0.7933 (2) | 0.42135 (17) | 1.58003 (15) | 0.0263 (3) | |
| C10 | 0.6936 (2) | 0.26379 (18) | 1.54195 (17) | 0.0323 (3) | |
| H10 | 0.5874 | 0.2034 | 1.4502 | 0.039* | |
| C11 | 0.7530 (3) | 0.2008 (2) | 1.6396 (2) | 0.0385 (4) | |
| H11 | 0.6883 | 0.0963 | 1.6131 | 0.046* | |
| N12 | 0.7487 (2) | 0.48454 (16) | 1.48525 (14) | 0.0366 (3) | |
| H12A | 0.8135 | 0.5801 | 1.5109 | 0.044* | |
| H12B | 0.6549 | 0.43 | 1.3981 | 0.044* | |
| O1W | 0.18379 (14) | 0.05465 (11) | 1.21508 (10) | 0.0249 (2) | |
| H1WA | 0.2767 | 0.1294 | 1.2294 | 0.037* | |
| H1WB | 0.1353 | 0.0931 | 1.2806 | 0.037* | |
| O2W | −0.21078 (14) | 0.11312 (11) | 1.06521 (11) | 0.0250 (2) | |
| H2WA | −0.2557 | 0.0702 | 1.1104 | 0.038* | |
| H2WB | −0.3121 | 0.1088 | 0.9937 | 0.038* | |
| O3W | 0.05029 (18) | 0.17265 (13) | 0.43489 (12) | 0.0358 (3) | |
| H3WA | 0.1248 | 0.1693 | 0.5134 | 0.054* | |
| H3WB | −0.0649 | 0.1083 | 0.4016 | 0.054* |
| Ni1 | 0.01682 (13) | 0.01646 (12) | 0.01797 (13) | −0.00033 (9) | 0.00487 (9) | 0.00990 (9) |
| C1 | 0.0150 (6) | 0.0182 (6) | 0.0194 (6) | 0.0003 (5) | 0.0045 (5) | 0.0102 (5) |
| C2 | 0.0159 (6) | 0.0171 (6) | 0.0190 (6) | 0.0011 (5) | 0.0046 (5) | 0.0085 (5) |
| C3 | 0.0188 (6) | 0.0199 (6) | 0.0172 (6) | 0.0013 (5) | 0.0067 (5) | 0.0088 (5) |
| C4 | 0.0212 (6) | 0.0155 (6) | 0.0190 (6) | 0.0018 (5) | 0.0079 (5) | 0.0082 (5) |
| C5 | 0.0220 (6) | 0.0179 (6) | 0.0217 (6) | 0.0010 (5) | 0.0090 (5) | 0.0079 (5) |
| O1 | 0.0182 (4) | 0.0195 (4) | 0.0217 (4) | −0.0017 (3) | 0.0049 (4) | 0.0115 (4) |
| O2 | 0.0300 (5) | 0.0348 (6) | 0.0243 (5) | −0.0091 (4) | −0.0002 (4) | 0.0193 (4) |
| O3 | 0.0665 (8) | 0.0240 (5) | 0.0223 (5) | 0.0006 (5) | −0.0037 (5) | 0.0059 (4) |
| O4 | 0.0328 (5) | 0.0210 (5) | 0.0337 (5) | 0.0077 (4) | 0.0129 (4) | 0.0150 (4) |
| N6 | 0.0492 (8) | 0.0541 (9) | 0.0376 (8) | 0.0307 (7) | 0.0234 (7) | 0.0323 (7) |
| C7 | 0.0351 (8) | 0.0506 (10) | 0.0244 (7) | 0.0195 (7) | 0.0084 (6) | 0.0136 (7) |
| C8 | 0.0294 (8) | 0.0299 (7) | 0.0264 (7) | 0.0065 (6) | 0.0061 (6) | 0.0073 (6) |
| C9 | 0.0253 (7) | 0.0269 (7) | 0.0251 (7) | 0.0072 (6) | 0.0084 (6) | 0.0111 (6) |
| C10 | 0.0324 (8) | 0.0284 (7) | 0.0303 (8) | 0.0030 (6) | 0.0082 (6) | 0.0120 (6) |
| C11 | 0.0470 (10) | 0.0332 (8) | 0.0481 (10) | 0.0153 (7) | 0.0256 (8) | 0.0239 (7) |
| N12 | 0.0378 (7) | 0.0321 (7) | 0.0301 (7) | −0.0024 (6) | −0.0001 (6) | 0.0176 (6) |
| O1W | 0.0239 (5) | 0.0274 (5) | 0.0216 (5) | −0.0017 (4) | 0.0062 (4) | 0.0132 (4) |
| O2W | 0.0231 (5) | 0.0244 (5) | 0.0301 (5) | 0.0040 (4) | 0.0106 (4) | 0.0149 (4) |
| O3W | 0.0413 (6) | 0.0364 (6) | 0.0328 (6) | 0.0062 (5) | 0.0154 (5) | 0.0185 (5) |
| Ni1—O1 | 2.054 (1) | N6—H6 | 0.86 |
| Ni1—O1i | 2.054 (1) | C7—C8 | 1.347 (2) |
| Ni1—O1W | 2.063 (1) | C7—H7 | 0.93 |
| Ni1—O1Wi | 2.063 (1) | C8—C9 | 1.412 (2) |
| Ni1—O2Wi | 2.082 (1) | C8—H8 | 0.93 |
| Ni1—O2W | 2.082 (1) | C9—N12 | 1.3249 (19) |
| C1—C3ii | 1.3917 (18) | C9—C10 | 1.413 (2) |
| C1—C2 | 1.4012 (18) | C10—C11 | 1.357 (2) |
| C1—C4 | 1.5040 (16) | C10—H10 | 0.93 |
| C2—C3 | 1.3894 (17) | C11—H11 | 0.93 |
| C2—C5 | 1.5168 (17) | N12—H12A | 0.86 |
| C3—C1ii | 1.3917 (18) | N12—H12B | 0.86 |
| C3—H3 | 0.93 | O1W—H1WA | 0.8491 |
| C4—O2 | 1.2416 (16) | O1W—H1WB | 0.8517 |
| C4—O1 | 1.2673 (16) | O2W—H2WA | 0.8491 |
| C5—O3 | 1.2376 (17) | O2W—H2WB | 0.8517 |
| C5—O4 | 1.2496 (17) | O3W—H3WA | 0.8491 |
| N6—C11 | 1.342 (2) | O3W—H3WB | 0.8517 |
| N6—C7 | 1.344 (2) | ||
| O1—Ni1—O1i | 180 | C4—O1—Ni1 | 124.64 (8) |
| O1—Ni1—O1W | 94.96 (4) | C11—N6—C7 | 120.39 (14) |
| O1i—Ni1—O1W | 85.04 (4) | C11—N6—H6 | 119.8 |
| O1—Ni1—O1Wi | 85.04 (4) | C7—N6—H6 | 119.8 |
| O1i—Ni1—O1Wi | 94.96 (4) | N6—C7—C8 | 121.61 (15) |
| O1W—Ni1—O1Wi | 180 | N6—C7—H7 | 119.2 |
| O1—Ni1—O2Wi | 87.65 (4) | C8—C7—H7 | 119.2 |
| O1i—Ni1—O2Wi | 92.35 (4) | C7—C8—C9 | 119.94 (15) |
| O1W—Ni1—O2Wi | 87.40 (4) | C7—C8—H8 | 120 |
| O1Wi—Ni1—O2Wi | 92.60 (4) | C9—C8—H8 | 120 |
| O1—Ni1—O2W | 92.35 (4) | N12—C9—C8 | 121.08 (14) |
| O1i—Ni1—O2W | 87.65 (4) | N12—C9—C10 | 122.01 (13) |
| O1W—Ni1—O2W | 92.60 (4) | C8—C9—C10 | 116.90 (13) |
| O1Wi—Ni1—O2W | 87.40 (4) | C11—C10—C9 | 119.85 (15) |
| O2Wi—Ni1—O2W | 180 | C11—C10—H10 | 120.1 |
| C3ii—C1—C2 | 120.00 (11) | C9—C10—H10 | 120.1 |
| C3ii—C1—C4 | 118.01 (11) | N6—C11—C10 | 121.24 (15) |
| C2—C1—C4 | 121.77 (11) | N6—C11—H11 | 119.4 |
| C3—C2—C1 | 118.62 (11) | C10—C11—H11 | 119.4 |
| C3—C2—C5 | 119.85 (11) | C9—N12—H12A | 120 |
| C1—C2—C5 | 121.49 (11) | C9—N12—H12B | 120 |
| C2—C3—C1ii | 121.37 (12) | H12A—N12—H12B | 120 |
| C2—C3—H3 | 119.3 | Ni1—O1W—H1WA | 98.6 |
| C1ii—C3—H3 | 119.3 | Ni1—O1W—H1WB | 116.7 |
| O2—C4—O1 | 125.75 (11) | H1WA—O1W—H1WB | 107.6 |
| O2—C4—C1 | 118.41 (11) | Ni1—O2W—H2WA | 109.6 |
| O1—C4—C1 | 115.78 (11) | Ni1—O2W—H2WB | 114 |
| O3—C5—O4 | 124.70 (12) | H2WA—O2W—H2WB | 107.6 |
| O3—C5—C2 | 118.15 (12) | H3WA—O3W—H3WB | 107.6 |
| O4—C5—C2 | 117.15 (11) | ||
| C3ii—C1—C2—C3 | −1.1 (2) | O2—C4—O1—Ni1 | −20.66 (18) |
| C4—C1—C2—C3 | 173.38 (11) | C1—C4—O1—Ni1 | 162.24 (8) |
| C3ii—C1—C2—C5 | 176.81 (11) | O1W—Ni1—O1—C4 | 21.65 (10) |
| C4—C1—C2—C5 | −8.73 (18) | O1Wi—Ni1—O1—C4 | −158.35 (10) |
| C1—C2—C3—C1ii | 1.1 (2) | O2Wi—Ni1—O1—C4 | −65.53 (10) |
| C5—C2—C3—C1ii | −176.83 (11) | O2W—Ni1—O1—C4 | 114.47 (10) |
| C3ii—C1—C4—O2 | −54.95 (17) | C11—N6—C7—C8 | −0.7 (2) |
| C2—C1—C4—O2 | 130.48 (13) | N6—C7—C8—C9 | −1.1 (2) |
| C3ii—C1—C4—O1 | 122.37 (13) | C7—C8—C9—N12 | −176.02 (14) |
| C2—C1—C4—O1 | −52.20 (16) | C7—C8—C9—C10 | 2.8 (2) |
| C3—C2—C5—O3 | −45.83 (18) | N12—C9—C10—C11 | 175.97 (15) |
| C1—C2—C5—O3 | 136.30 (14) | C8—C9—C10—C11 | −2.9 (2) |
| C3—C2—C5—O4 | 133.70 (13) | C7—N6—C11—C10 | 0.7 (2) |
| C1—C2—C5—O4 | −44.16 (17) | C9—C10—C11—N6 | 1.2 (2) |
| H··· | ||||
| N6—H6···O1iii | 0.86 | 2.12 | 2.926 (1) | 156 |
| N12—H12B···O2 | 0.86 | 2.00 | 2.856 (2) | 171 |
| N12—H12A···O3Wii | 0.86 | 2.19 | 3.048 (2) | 174 |
| O1W—H1WA···O2 | 0.85 | 1.81 | 2.634 (1) | 163 |
| O1W—H1WB···O3Wiv | 0.85 | 1.85 | 2.697 (1) | 175 |
| O2W—H2WA···O4i | 0.85 | 1.93 | 2.750 (1) | 162 |
| O2W—H2WB···O4v | 0.85 | 1.90 | 2.732 (1) | 165 |
| O3W—H3WA···O3 | 0.85 | 1.86 | 2.694 (2) | 168 |
| O3W—H3WB···O3vi | 0.85 | 2.12 | 2.911 (2) | 154 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N6—H6⋯O1i | 0.86 | 2.12 | 2.926 (1) | 156 |
| N12—H12 | 0.86 | 2.00 | 2.856 (2) | 171 |
| N12—H12 | 0.86 | 2.19 | 3.048 (2) | 174 |
| O1 | 0.85 | 1.81 | 2.634 (1) | 163 |
| O1 | 0.85 | 1.85 | 2.697 (1) | 175 |
| O2 | 0.85 | 1.93 | 2.750 (1) | 162 |
| O2 | 0.85 | 1.90 | 2.732 (1) | 165 |
| O3 | 0.85 | 1.86 | 2.694 (2) | 168 |
| O3 | 0.85 | 2.12 | 2.911 (2) | 154 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .