Literature DB >> 24426989

2-Amino-6-methyl-pyridinium trans-di-aqua-dioxalatochromate(III) monohydrate.

Rihab Dridi1, Saoussen Namouchi Cherni1, Mohamed Faouzi Zid1, Ahmed Driss1.   

Abstract

In the title compound, (C6H9N2)[Cr(C2O4)2(H2O)2H2O, the Cr(III) atom adopts a slightly distorted octa-hedral coordination environment defined by two chelating oxalate ligands in the equatorial plane and two water mol-ecules in axial positions. A three-dimensional network is generated by inter-molecular N-H⋯O and O-H⋯O hydrogen-bonding interactions involving the cation, the complex anion and the lattice water molecule.

Entities:  

Year:  2013        PMID: 24426989      PMCID: PMC3884382          DOI: 10.1107/S1600536813022058

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the coordination chemistry of oxalates, see: Martin et al. (2007 ▶). For the structural characterization of organic–inorganic salts containing the [Cr(C2O4)2(H2O)2]− anion, see: Bélombé et al. (2009 ▶); Nenwa et al. (2010 ▶); Chérif et al. (2011 ▶); Chérif, Abdelhak et al. (2012 ▶); Chérif, Zid et al. (2012 ▶). For C—O bond lengths in oxalate anions, see: Marinescu et al. (2000 ▶). For geometric parameters of the 2-amino-6-methyl­pyridinium cation, see: Fun et al. (2008 ▶, 2009 ▶, 2010 ▶); Jebas et al. (2009 ▶); Quah et al. (2008 ▶); Ramesh et al. (2010 ▶); Rotondo et al. (2009 ▶); Pan et al. (2008 ▶). For discussion of hydrogen bonding, see: Blessing (1986 ▶); Brown (1976 ▶).

Experimental

Crystal data

(C6H9N2)[Cr(C2O4)2(H2O)2H2O M = 391.24 Monoclinic, a = 18.572 (3) Å b = 11.025 (2) Å c = 14.975 (3) Å β = 96.28 (2)° V = 3047.8 (10) Å3 Z = 8 Mo Kα radiation μ = 0.81 mm−1 T = 298 K 0.56 × 0.42 × 0.33 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.679, T max = 0.764 4604 measured reflections 3312 independent reflections 2896 reflections with I > 2σ(I) R int = 0.037 2 standard reflections every 120 min intensity decay: 3.2%

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.112 S = 1.07 3312 reflections 218 parameters H-atom parameters constrained Δρmax = 0.65 e Å−3 Δρmin = −0.45 e Å−3 Data collection: CAD-4 EXPRESS (Duisenberg, 1992 ▶; Macíček & Yordanov, 1992 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 1999 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813022058/mw2113sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813022058/mw2113Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C6H9N2)[Cr(C2O4)2(H2O)2]·H2OF(000) = 1608
Mr = 391.24Dx = 1.705 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 25 reflections
a = 18.572 (3) Åθ = 10–15°
b = 11.025 (2) ŵ = 0.81 mm1
c = 14.975 (3) ÅT = 298 K
β = 96.28 (2)°Prism, pink
V = 3047.8 (10) Å30.56 × 0.42 × 0.33 mm
Z = 8
Enraf–Nonius CAD-4 diffractometer2896 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.037
Graphite monochromatorθmax = 27.0°, θmin = 2.2°
non–profiled ω/2θ scansh = −23→23
Absorption correction: ψ scan (North et al., 1968)k = −1→14
Tmin = 0.679, Tmax = 0.764l = −19→3
4604 measured reflections2 standard reflections every 120 min
3312 independent reflections intensity decay: 3.2%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: mixed
wR(F2) = 0.112H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0677P)2 + 2.2239P] where P = (Fo2 + 2Fc2)/3
3312 reflections(Δ/σ)max = 0.001
218 parametersΔρmax = 0.65 e Å3
0 restraintsΔρmin = −0.45 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cr10.32255 (2)0.27746 (3)0.19839 (2)0.02219 (13)
O10.38682 (8)0.29143 (13)0.09943 (9)0.0291 (3)
H30.37200.24660.05680.044*
H40.42790.26390.11500.044*
O20.25655 (9)0.26707 (13)0.29364 (10)0.0325 (3)
H20.25870.32600.32840.049*
H100.25780.20500.32510.049*
O30.24053 (8)0.26015 (12)0.10486 (9)0.0259 (3)
O40.40928 (8)0.28451 (13)0.28656 (10)0.0315 (3)
O50.29813 (8)0.45160 (12)0.18501 (10)0.0290 (3)
O60.33921 (8)0.10332 (13)0.20991 (9)0.0284 (3)
O70.15703 (8)0.37130 (15)0.02425 (10)0.0379 (4)
O80.22682 (10)0.57497 (14)0.09691 (10)0.0374 (4)
O90.40914 (10)−0.03256 (15)0.28778 (13)0.0468 (4)
O100.49100 (8)0.16363 (17)0.36144 (11)0.0389 (4)
O110.24742 (10)−0.05094 (17)0.09548 (11)0.0480 (5)
H10.2610−0.06200.04510.072*
H110.27250.00150.12390.072*
N10.49218 (10)0.78135 (16)0.37925 (13)0.0325 (4)
H70.46320.84340.35320.039*
N20.56211 (12)0.93977 (19)0.43928 (15)0.0455 (5)
H50.60020.96460.48070.055*
H130.53200.99780.40960.055*
C10.21055 (11)0.35961 (17)0.07919 (12)0.0246 (4)
C20.43552 (11)0.1812 (2)0.31024 (13)0.0281 (4)
C30.24748 (11)0.47407 (17)0.12350 (13)0.0254 (4)
C40.39248 (11)0.07128 (19)0.26753 (14)0.0288 (4)
C50.52196 (14)0.5768 (2)0.4038 (2)0.0480 (6)
H120.51240.49470.39490.058*
C60.58452 (15)0.6150 (3)0.4566 (2)0.0518 (7)
H90.61650.55700.48300.062*
C70.59978 (14)0.7335 (3)0.47029 (18)0.0449 (6)
H60.64160.75700.50610.054*
C80.47476 (13)0.6629 (2)0.36524 (17)0.0397 (5)
C90.40503 (15)0.6364 (3)0.3091 (2)0.0587 (8)
H80.36590.63950.34600.088*
H140.40720.55700.28320.088*
H150.39710.69560.26210.088*
C100.55186 (12)0.8210 (2)0.42989 (15)0.0337 (5)
U11U22U33U12U13U23
Cr10.02305 (19)0.01884 (19)0.02292 (19)0.00059 (11)−0.00543 (12)0.00012 (10)
O10.0281 (7)0.0301 (7)0.0279 (7)−0.0021 (6)−0.0021 (6)−0.0019 (6)
O20.0400 (8)0.0271 (8)0.0304 (8)0.0037 (6)0.0047 (6)0.0027 (6)
O30.0260 (7)0.0220 (7)0.0278 (7)−0.0003 (5)−0.0059 (5)−0.0012 (5)
O40.0305 (8)0.0311 (8)0.0302 (8)−0.0023 (6)−0.0088 (6)−0.0015 (6)
O50.0329 (7)0.0200 (6)0.0317 (7)0.0001 (6)−0.0071 (6)−0.0014 (5)
O60.0272 (7)0.0228 (7)0.0330 (7)0.0015 (6)−0.0062 (6)0.0006 (6)
O70.0356 (8)0.0361 (8)0.0377 (8)0.0107 (7)−0.0152 (7)−0.0085 (7)
O80.0545 (10)0.0220 (7)0.0333 (8)0.0083 (7)−0.0054 (7)0.0007 (6)
O90.0468 (10)0.0309 (9)0.0602 (11)0.0099 (7)−0.0058 (8)0.0134 (8)
O100.0261 (7)0.0521 (10)0.0359 (8)0.0011 (7)−0.0087 (6)0.0098 (7)
O110.0649 (12)0.0413 (10)0.0375 (9)−0.0201 (9)0.0042 (8)0.0002 (7)
N10.0279 (9)0.0289 (9)0.0396 (10)0.0063 (7)−0.0012 (7)0.0018 (7)
N20.0462 (12)0.0356 (10)0.0534 (12)−0.0063 (9)−0.0005 (9)−0.0046 (9)
C10.0270 (9)0.0249 (10)0.0214 (9)0.0032 (7)−0.0002 (7)−0.0016 (7)
C20.0229 (9)0.0371 (11)0.0240 (9)0.0005 (8)0.0003 (7)0.0042 (8)
C30.0316 (10)0.0229 (9)0.0215 (9)0.0017 (7)0.0015 (7)−0.0015 (7)
C40.0264 (10)0.0280 (10)0.0312 (10)0.0029 (8)0.0005 (8)0.0053 (8)
C50.0487 (15)0.0287 (11)0.0673 (17)0.0031 (11)0.0094 (13)0.0012 (11)
C60.0435 (14)0.0473 (14)0.0639 (17)0.0152 (12)0.0029 (12)0.0120 (13)
C70.0331 (12)0.0506 (15)0.0486 (14)0.0068 (10)−0.0061 (11)0.0036 (11)
C80.0338 (11)0.0353 (12)0.0509 (14)−0.0016 (9)0.0087 (10)−0.0066 (10)
C90.0378 (13)0.0634 (19)0.0733 (19)−0.0083 (13)−0.0011 (13)−0.0253 (15)
C100.0295 (10)0.0381 (12)0.0334 (11)0.0027 (9)0.0028 (8)0.0033 (9)
Cr1—O61.9493 (15)N1—C101.346 (3)
Cr1—O31.9626 (14)N1—C81.357 (3)
Cr1—O41.9695 (15)N1—H70.9300
Cr1—O51.9778 (15)N2—C101.328 (3)
Cr1—O21.9830 (15)N2—H50.9300
Cr1—O12.0080 (15)N2—H130.9300
O1—H30.8300C1—C31.550 (3)
O1—H40.8300C2—C41.551 (3)
O2—H20.8299C5—C81.375 (4)
O2—H100.8300C5—C61.397 (4)
O3—C11.270 (2)C5—H120.9300
O4—C21.274 (3)C6—C71.348 (4)
O5—C31.267 (2)C6—H90.9300
O6—C41.289 (2)C7—C101.404 (3)
O7—C11.226 (2)C7—H60.9300
O8—C31.229 (2)C8—C91.494 (4)
O9—C41.216 (3)C9—H80.9600
O10—C21.231 (2)C9—H140.9600
O11—H10.8299C9—H150.9600
O11—H110.8301
O6—Cr1—O394.05 (6)O7—C1—C3119.34 (17)
O6—Cr1—O482.49 (6)O3—C1—C3114.48 (16)
O3—Cr1—O4175.08 (6)O10—C2—O4125.7 (2)
O6—Cr1—O5175.89 (6)O10—C2—C4119.50 (19)
O3—Cr1—O582.57 (6)O4—C2—C4114.82 (16)
O4—Cr1—O5101.03 (6)O8—C3—O5126.40 (19)
O6—Cr1—O289.09 (6)O8—C3—C1119.36 (18)
O3—Cr1—O290.87 (7)O5—C3—C1114.24 (16)
O4—Cr1—O292.56 (7)O9—C4—O6125.5 (2)
O5—Cr1—O288.63 (6)O9—C4—C2121.83 (19)
O6—Cr1—O192.26 (6)O6—C4—C2112.65 (17)
O3—Cr1—O187.62 (6)C8—C5—C6118.9 (2)
O4—Cr1—O189.03 (6)C8—C5—H12120.6
O5—Cr1—O189.94 (6)C6—C5—H12120.6
O2—Cr1—O1178.04 (6)C7—C6—C5121.7 (2)
Cr1—O1—H3110.3C7—C6—H9119.1
Cr1—O1—H4111.5C5—C6—H9119.1
H3—O1—H4102.5C6—C7—C10119.2 (2)
Cr1—O2—H2114.5C6—C7—H6120.4
Cr1—O2—H10118.3C10—C7—H6120.4
H2—O2—H10107.0N1—C8—C5118.0 (2)
C1—O3—Cr1114.35 (12)N1—C8—C9116.9 (2)
C2—O4—Cr1114.29 (13)C5—C8—C9125.1 (2)
C3—O5—Cr1114.03 (12)C8—C9—H8109.5
C4—O6—Cr1115.59 (13)C8—C9—H14109.5
H1—O11—H11111.1H8—C9—H14109.5
C10—N1—C8124.6 (2)C8—C9—H15109.5
C10—N1—H7113.7H8—C9—H15109.5
C8—N1—H7121.7H14—C9—H15109.5
C10—N2—H5116.8N2—C10—N1118.7 (2)
C10—N2—H13123.8N2—C10—C7123.7 (2)
H5—N2—H13119.3N1—C10—C7117.6 (2)
O7—C1—O3126.18 (18)
Cr1—O3—C1—O7−177.14 (17)O4—C2—C4—O9−176.0 (2)
Cr1—O3—C1—C33.0 (2)O10—C2—C4—O6−174.65 (18)
Cr1—O4—C2—O10176.81 (17)O4—C2—C4—O64.3 (3)
Cr1—O4—C2—C4−2.0 (2)C8—C5—C6—C7−0.3 (4)
Cr1—O5—C3—O8−173.21 (18)C5—C6—C7—C10−0.5 (4)
Cr1—O5—C3—C16.1 (2)C10—N1—C8—C5−1.4 (4)
O7—C1—C3—O8−6.7 (3)C10—N1—C8—C9178.2 (2)
O3—C1—C3—O8173.12 (19)C6—C5—C8—N11.2 (4)
O7—C1—C3—O5173.94 (18)C6—C5—C8—C9−178.4 (3)
O3—C1—C3—O5−6.2 (2)C8—N1—C10—N2−179.0 (2)
Cr1—O6—C4—O9175.95 (19)C8—N1—C10—C70.7 (4)
Cr1—O6—C4—C2−4.4 (2)C6—C7—C10—N2−180.0 (2)
O10—C2—C4—O95.1 (3)C6—C7—C10—N10.3 (4)
D—H···AD—HH···AD···AD—H···A
O1—H3···O7i0.831.822.643 (2)171
O1—H4···O10ii0.831.872.681 (2)165
O2—H2···O11iii0.831.782.611 (2)173
O2—H10···O8iv0.831.852.675 (2)172
N1—H7···O9v0.931.902.829 (2)174
N2—H5···O7vi0.932.162.928 (3)139
N2—H13···O10v0.932.082.976 (3)162
C9—H8···O3iii0.962.563.405 (3)147
C9—H14···O50.962.643.277 (3)124
O11—H1···O8i0.832.172.983 (2)167
O11—H11···O60.832.032.845 (2)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H3⋯O7i 0.831.822.643 (2)171
O1—H4⋯O10ii 0.831.872.681 (2)165
O2—H2⋯O11iii 0.831.782.611 (2)173
O2—H10⋯O8iv 0.831.852.675 (2)172
N1—H7⋯O9v 0.931.902.829 (2)174
N2—H5⋯O7vi 0.932.162.928 (3)139
N2—H13⋯O10v 0.932.082.976 (3)162
O11—H1⋯O8i 0.832.172.983 (2)167
O11—H11⋯O60.832.032.845 (2)169

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  13 in total

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Authors:  Ching Kheng Quah; Samuel Robinson Jebas; Hoong-Kun Fun
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2.  Bis(4-amino-pyridinium) bis(hydrogen oxalate) monohydrate.

Authors:  Hoong-Kun Fun; Jain John; Samuel Robinson Jebas; T Balasubramanian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-14

3.  catena-Poly[bis-(4-amino-pyridinium) [[tetra-aqua-nickel(II)]-μ-benzene-1,2,4,5-tetra-carboxyl-ato] dihydrate].

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4.  Bis(4-amino-pyridinium) bis-(oxalato-κO,O')cuprate(II) dihydrate.

Authors:  Zi-Cai Pan; Kou-Lin Zhang; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-18

5.  4-Amino-pyridinium 4-amino-benzene-sulfonate 4-ammonio-benzene-sulfonate monohydrate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-12

6.  4-Amino-pyridinium picrate.

Authors:  P Ramesh; R Akalya; A Chandramohan; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-31

7.  Bis(4-amino-pyridinium) tetra-chlorido-cobaltate(II).

Authors:  Samuel Robinson Jebas; A Sinthiya; B Ravindran Durai Nayagam; Dieter Schollmeyer; S Alfred Cecil Raj
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-18

8.  4-Amino-pyridinium trans-diaqua-dioxalatochromate(III) monohydrate.

Authors:  Ichraf Chérif; Jawher Abdelhak; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-02

9.  2-Amino-5-chloro-pyridinium cis-diaqua-dioxalatochromate(III) sesquihydrate.

Authors:  Ichraf Chérif; Jawher Abdelhak; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-26

10.  3-Amino-pyridinium trans-diaqua-dioxalato-chromate(III).

Authors:  Ichraf Chérif; Mohamed Faouzi Zid; Malika El-Ghozzi; Daniel Avignant
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13
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1.  Crystal structure of 4-(di-methyl-amino)-pyridinium cis-di-aqua-bis-(oxalato-κ(2) O,O')ferrate(III) hemihydrate.

Authors:  Edith Dimitri Djomo; Frédéric Capet; Justin Nenwa; Michel M Bélombé; Michel Foulon
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-07-15

2.  Crystal structure and spectroscopic analysis of a new oxalate-bridged Mn(II) compound: catena-poly[guanidinium [[aqua-chlorido-manganese(II)]-μ2-oxalato-κ(4) O (1),O (2):O (1'),O (2')] monohydrate].

Authors:  Hiba Sehimi; Ichraf Chérif; Mohamed Faouzi Zid
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3.  Pyridinium trans-di-aqua-bis-[oxalato(2-)-κ(2) O (1),O (2)]chromate(III) urea monosolvate.

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