Literature DB >> 21588840

4-(Dimethyl-amino)-pyridinium trans-diaqua-bis-[oxalato(2-)-κO,O]chromate(III).

Justin Nenwa, Michel M Belombe, Jean Ngoune, Boniface P T Fokwa.   

Abstract

In the title salt, (C(7)n class="Species">H(11)N(2))[Cr(C(2)O(4))(2)(H(2)O)(2)], the asymmetric unit contains one half-cation and one half-anion. The Cr atom, the C and N atoms involved in C- N(exocyclic) bonding and the N and H atoms of N-H groups lie on twofold rotation axis. The Cr(III) atom of the complex anion is six-coordinated in a distorted (4 + 2) octa-hedral geometry with four equatorial O atoms of two nearly coplanar oxalate and two quasi-axial aqua O atoms. In the crystal, the protonated N atoms of the pyridine rings are hydrogen bonded to the carbonyl O atoms of the anions, forming chains along [010]. These chains are connected by lateral O-H⋯O hydrogen bonds, stabilizing the structure.

Entities:  

Year:  2010        PMID: 21588840      PMCID: PMC3009100          DOI: 10.1107/S1600536810040353

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the coordination chemistry of oxalate, see: Martin et al. (2007 ▶). For related structures, see: Bélombé et al. (2009 ▶); Ghouili et al. (2010 ▶).

Experimental

Crystal data

(C7H11N2)[n class="Chemical">Cr(C2O4)2(H2O)2] M = 387.25 Monoclinic, a = 11.524 (4) Å b = 20.372 (8) Å c = 7.355 (2) Å β = 120.626 (6)° V = 1485.9 (9) Å3 Z = 4 Mo Kα radiation μ = 0.83 mm−1 T = 293 K 0.20 × 0.20 × 0.10 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.895, T max = 0.910 10203 measured reflections 1857 independent reflections 1739 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.089 S = 1.16 1857 reflections 127 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.38 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810040353/bx2312sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810040353/bx2312Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C7H11N2)[Cr(C2O4)2(H2O)2]F(000) = 796
Mr = 387.25Dx = 1.731 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1857 reflections
a = 11.524 (4) Åθ = 2.0–28.3°
b = 20.372 (8) ŵ = 0.83 mm1
c = 7.355 (2) ÅT = 293 K
β = 120.626 (6)°Prism, dark-violet
V = 1485.9 (9) Å30.20 × 0.20 × 0.10 mm
Z = 4
Bruker APEX CCD area-detector diffractometer1857 independent reflections
Radiation source: fine-focus sealed tube1739 reflections with I > 2σ(I)
graphiteRint = 0.046
integration method scansθmax = 28.3°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −15→15
Tmin = 0.895, Tmax = 0.910k = −27→27
10203 measured reflectionsl = −9→9
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.089w = 1/[σ2(Fo2) + (0.0395P)2 + 1.1284P] where P = (Fo2 + 2Fc2)/3
S = 1.16(Δ/σ)max < 0.001
1857 reflectionsΔρmax = 0.37 e Å3
127 parametersΔρmin = −0.38 e Å3
2 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0065 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cr10.00000.148676 (17)0.25000.02141 (14)
O10.10432 (13)0.15066 (6)0.5670 (2)0.0278 (3)
H1A0.1841 (11)0.1603 (11)0.618 (4)0.038 (6)*
H1B0.097 (2)0.1194 (8)0.626 (3)0.039 (6)*
O20.11598 (12)0.22143 (6)0.2606 (2)0.0273 (3)
O30.10971 (12)0.07688 (6)0.2448 (2)0.0275 (3)
O40.12757 (13)0.33040 (6)0.2756 (2)0.0324 (3)
O50.11585 (14)−0.03196 (7)0.2324 (2)0.0394 (4)
C10.06468 (17)0.01913 (8)0.2430 (3)0.0259 (4)
C20.07080 (16)0.27821 (8)0.2608 (3)0.0236 (3)
N110.50000.15711 (11)0.25000.0374 (5)
N120.5000−0.04417 (12)0.25000.0393 (6)
H120.5000−0.08640.25000.096 (17)*
C110.3808 (3)0.19340 (12)0.2074 (5)0.0594 (7)
H11C0.39980.23960.21910.121 (15)*
H11D0.35480.18110.30770.088 (11)*
H11E0.30870.18360.06710.077 (10)*
C120.50000.09124 (12)0.25000.0263 (5)
C130.38704 (18)0.05453 (10)0.2186 (3)0.0341 (4)
H130.30970.07600.19670.049 (7)*
C140.3915 (2)−0.01145 (10)0.2204 (3)0.0394 (5)
H140.3167−0.03490.20050.070 (9)*
U11U22U33U12U13U23
Cr10.0191 (2)0.0153 (2)0.0318 (2)0.0000.01434 (16)0.000
O10.0272 (7)0.0222 (6)0.0332 (7)−0.0025 (5)0.0147 (6)0.0010 (5)
O20.0237 (6)0.0200 (6)0.0417 (7)−0.0003 (4)0.0192 (6)0.0007 (5)
O30.0236 (6)0.0222 (6)0.0400 (7)0.0021 (5)0.0186 (5)−0.0004 (5)
O40.0275 (6)0.0205 (6)0.0477 (8)−0.0031 (5)0.0180 (6)0.0019 (5)
O50.0379 (8)0.0254 (7)0.0459 (8)0.0093 (5)0.0148 (6)−0.0056 (6)
C10.0242 (8)0.0219 (8)0.0252 (8)0.0029 (6)0.0080 (7)−0.0011 (6)
C20.0216 (8)0.0216 (8)0.0258 (8)0.0007 (6)0.0110 (6)0.0014 (6)
N110.0452 (14)0.0244 (11)0.0443 (14)0.0000.0240 (12)0.000
N120.0497 (15)0.0244 (12)0.0397 (13)0.0000.0198 (11)0.000
C110.0716 (18)0.0393 (13)0.0646 (16)0.0220 (12)0.0327 (15)−0.0016 (11)
C120.0265 (12)0.0271 (12)0.0259 (11)0.0000.0138 (10)0.000
C130.0248 (9)0.0395 (10)0.0398 (10)−0.0006 (7)0.0178 (8)−0.0021 (8)
C140.0376 (11)0.0398 (11)0.0399 (11)−0.0139 (8)0.0190 (9)−0.0035 (8)
Cr1—O3i1.9466 (13)N11—C121.342 (3)
Cr1—O31.9466 (13)N11—C11ii1.447 (3)
Cr1—O21.9706 (13)N11—C111.447 (3)
Cr1—O2i1.9706 (13)N12—C14ii1.333 (3)
Cr1—O1i2.0067 (14)N12—C141.333 (3)
Cr1—O12.0067 (14)N12—H120.8600
O1—H1A0.821 (10)C11—H11C0.9600
O1—H1B0.802 (10)C11—H11D0.9600
O2—C21.269 (2)C11—H11E0.9600
O3—C11.283 (2)C12—C131.414 (2)
O4—C21.224 (2)C12—C13ii1.414 (2)
O5—C11.218 (2)C13—C141.345 (3)
C1—C1i1.546 (4)C13—H130.9300
C2—C2i1.557 (3)C14—H140.9300
O3i—Cr1—O382.57 (8)O4—C2—C2i119.61 (10)
O3i—Cr1—O2177.08 (5)O2—C2—C2i114.16 (9)
O3—Cr1—O297.57 (6)C12—N11—C11ii120.73 (15)
O3i—Cr1—O2i97.57 (6)C12—N11—C11120.73 (15)
O3—Cr1—O2i177.08 (5)C11ii—N11—C11118.5 (3)
O2—Cr1—O2i82.45 (7)C14ii—N12—C14120.0 (3)
O3i—Cr1—O1i91.57 (5)C14ii—N12—H12120.0
O3—Cr1—O1i90.16 (5)C14—N12—H12120.0
O2—Cr1—O1i91.35 (5)N11—C11—H11C109.5
O2i—Cr1—O1i86.91 (5)N11—C11—H11D109.5
O3i—Cr1—O190.16 (5)H11C—C11—H11D109.5
O3—Cr1—O191.57 (5)N11—C11—H11E109.5
O2—Cr1—O186.91 (5)H11C—C11—H11E109.5
O2i—Cr1—O191.35 (5)H11D—C11—H11E109.5
O1i—Cr1—O1177.70 (7)N11—C12—C13121.92 (12)
Cr1—O1—H1A114.1 (17)N11—C12—C13ii121.92 (12)
Cr1—O1—H1B116.7 (17)C13—C12—C13ii116.2 (2)
H1A—O1—H1B110 (2)C14—C13—C12119.97 (19)
C2—O2—Cr1114.53 (11)C14—C13—H13120.0
C1—O3—Cr1115.20 (11)C12—C13—H13120.0
O5—C1—O3125.28 (17)N12—C14—C13121.95 (19)
O5—C1—C1i121.26 (11)N12—C14—H14119.0
O3—C1—C1i113.46 (9)C13—C14—H14119.0
O4—C2—O2126.23 (15)
O3i—Cr1—O2—C2−89.0 (10)Cr1—O3—C1—C1i−3.0 (2)
O3—Cr1—O2—C2178.46 (12)Cr1—O2—C2—O4176.72 (14)
O2i—Cr1—O2—C21.40 (9)Cr1—O2—C2—C2i−3.4 (2)
O1i—Cr1—O2—C288.11 (12)C11ii—N11—C12—C13177.00 (16)
O1—Cr1—O2—C2−90.37 (12)C11—N11—C12—C13−3.00 (16)
O3i—Cr1—O3—C11.22 (9)C11ii—N11—C12—C13ii−3.00 (16)
O2—Cr1—O3—C1178.27 (12)C11—N11—C12—C13ii177.00 (16)
O2i—Cr1—O3—C1−91.7 (10)N11—C12—C13—C14−179.79 (14)
O1i—Cr1—O3—C1−90.34 (12)C13ii—C12—C13—C140.21 (14)
O1—Cr1—O3—C191.18 (12)C14ii—N12—C14—C130.22 (15)
Cr1—O3—C1—O5177.34 (15)C12—C13—C14—N12−0.4 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O4iii0.82 (1)1.91 (1)2.719 (2)171 (2)
O1—H1B···O5iv0.80 (1)1.91 (1)2.680 (2)160 (2)
N12—H12···O4v0.862.192.906 (3)141
N12—H12···O4vi0.862.192.906 (3)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O4i0.82 (1)1.91 (1)2.719 (2)171 (2)
O1—H1B⋯O5ii0.80 (1)1.91 (1)2.680 (2)160 (2)
N12—H12⋯O4iii0.862.192.906 (3)141
N12—H12⋯O4iv0.862.192.906 (3)141

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  A short history of SHELX.

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1.  4-Amino-pyridinium trans-diaqua-dioxalatochromate(III) monohydrate.

Authors:  Ichraf Chérif; Jawher Abdelhak; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-02

2.  2-Amino-5-chloro-pyridinium cis-diaqua-dioxalatochromate(III) sesquihydrate.

Authors:  Ichraf Chérif; Jawher Abdelhak; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-26

3.  3-Amino-pyridinium trans-diaqua-dioxalato-chromate(III).

Authors:  Ichraf Chérif; Mohamed Faouzi Zid; Malika El-Ghozzi; Daniel Avignant
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13

4.  Crystal structure of 4-(di-methyl-amino)-pyridinium cis-di-aqua-bis-(oxalato-κ(2) O,O')ferrate(III) hemihydrate.

Authors:  Edith Dimitri Djomo; Frédéric Capet; Justin Nenwa; Michel M Bélombé; Michel Foulon
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-07-15

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Authors:  Ichraf Chérif; Jawher Abdelhak; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-16

6.  4-(Dimethyl-amino)-pyridinium tetra-chloridoferrate(III).

Authors:  Amina Khadri; Rafika Bouchene; Sofiane Bouacida; Hocine Merazig; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-09

7.  2-Amino-pyridinium trans-diaqua-bis-(oxalato-κ(2)O,O)chromate(III).

Authors:  Justin Nenwa; Gouet Bebga; Signé Martin; Michel M Bélombé; Mohammed Mbarki; Boniface P T Fokwa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06

8.  Pyridinium cis-diaqua-bis-(oxalato-κ(2)O,O')chromate(III).

Authors:  Justin Nenwa; Olivier Befolo; Bebga Gouet; Mohammed Mbarki; Boniface P T Fokwa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-31

9.  Crystal structure of tris-[4-(di-methyl-amino)-pyridinium] tris-(oxalato-κ(2) O,O')chromate(III) tetra-hydrate.

Authors:  Noé Makon Ma Houga; Frédéric Capet; Justin Nenwa; Gouet Bebga; Michel Foulon
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-10-31

10.  Pyridinium trans-di-aqua-bis-[oxalato(2-)-κ(2) O (1),O (2)]chromate(III) urea monosolvate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-09-28
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