Literature DB >> 23284320

2-Amino-pyridinium trans-diaqua-bis-(oxalato-κ(2)O,O)chromate(III).

Justin Nenwa1, Gouet Bebga, Signé Martin, Michel M Bélombé, Mohammed Mbarki, Boniface P T Fokwa.   

Abstract

In the title hybrid salt, (C(5)H(7)N(2))[Cr(H(2)O)(2)(C(2)O(4))(2)], the Cr(III) ion is coordinated in a slightly distorted octa-hedral environment by four O atoms from two oxalate ligands in the equatorial plane and by two water O atoms in the axial sites. The 2-amino-pyridinium cation is disordered over two sets of sites in a 0.800 (7):0.200 (7) ratio. In the crystal, N-H⋯O and O-H⋯O hydrogen bonds connect the components into a three-dimensional network. The crystal studied was an inversion twin with components in a ratio 0.75 (2):0.25 (2).

Entities:  

Year:  2012        PMID: 23284320      PMCID: PMC3515093          DOI: 10.1107/S1600536812040950

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the coordination chemistry of oxalates, see: Martin et al. (2007 ▶). For the structural characterization of organic–inorganic salts containing the [Cr(H2O)2(C2O4)2]− anion, see: Bélombé et al. (2009 ▶); Nenwa et al. (2010 ▶); Chérif et al. (2011 ▶); Chérif, Abdelhak et al. (2012 ▶); Chérif, Zid et al. (2012 ▶).

Experimental

Crystal data

(C5H7N2)[Cr(H2O)2(C2O4)2] M = 359.20 Monoclinic, a = 6.8627 (14) Å b = 19.434 (4) Å c = 9.854 (2) Å β = 99.90 (3)° V = 1294.7 (5) Å3 Z = 4 Mo Kα radiation μ = 0.94 mm−1 T = 100 K 0.23 × 0.15 × 0.10 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.811, T max = 0.912 9645 measured reflections 3716 independent reflections 3391 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.088 S = 1.04 3716 reflections 241 parameters 21 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.52 e Å−3 Δρmin = −0.30 e Å−3 Absolute structure: Flack (1983 ▶), 1793 Friedel pairs Flack parameter: 0.25 (2) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: WinGX Farrugia (1999 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812040950/lh5534sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812040950/lh5534Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C5H7N2)[Cr(H2O)2(C2O4)2]F(000) = 732
Mr = 359.20Dx = 1.843 Mg m3
Monoclinic, IaMo Kα radiation, λ = 0.71073 Å
Hall symbol: I -2yaCell parameters from 3716 reflections
a = 6.8627 (14) Åθ = 2.4–30.7°
b = 19.434 (4) ŵ = 0.94 mm1
c = 9.854 (2) ÅT = 100 K
β = 99.90 (3)°Prism, blue
V = 1294.7 (5) Å30.23 × 0.15 × 0.10 mm
Z = 4
Bruker SMART APEX CCD diffractometer3716 independent reflections
Radiation source: fine-focus sealed tube3391 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
φ and ω scansθmax = 30.7°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −9→9
Tmin = 0.811, Tmax = 0.912k = −27→26
9645 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.088w = 1/[σ2(Fo2) + (0.0372P)2 + 2.2822P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
3716 reflectionsΔρmax = 0.52 e Å3
241 parametersΔρmin = −0.30 e Å3
21 restraintsAbsolute structure: Flack (1983), 1793 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.25 (2)
Experimental. A mixture of 2-aminopyridine (1 mmol, 100 mg) and oxalic acid (2 mmol, 260 mg) was dissolved in 30 ml of ethanol. An aqueous solution (20 ml) of CrCl3.6H2O (1 mmol, 266.5 mg) was added in successive small portions and stirred for 4 h continuously. The final blue-violet solution obtained was left at room temperature and crystals suitable for X-ray diffraction were obtained after a few days.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cr10.19814 (16)0.342519 (16)0.68436 (13)0.01109 (9)
C110.2455 (5)0.48129 (16)0.7396 (4)0.0177 (7)
C120.1032 (5)0.47555 (17)0.6004 (3)0.0195 (7)
O110.2936 (4)0.53790 (12)0.7885 (3)0.0321 (6)
O120.0359 (4)0.52679 (12)0.5348 (3)0.0282 (6)
O140.3031 (4)0.42294 (13)0.7934 (3)0.0183 (5)
O130.0649 (4)0.41336 (12)0.5602 (3)0.0180 (5)
C210.2715 (5)0.20807 (17)0.7621 (3)0.0135 (6)
C220.1519 (5)0.20649 (17)0.6142 (4)0.0145 (6)
O220.0979 (3)0.26575 (12)0.5654 (2)0.0155 (5)
O210.3152 (3)0.26885 (12)0.8085 (2)0.0134 (5)
O240.3136 (5)0.15470 (11)0.8242 (3)0.0221 (7)
O230.1161 (5)0.15033 (11)0.5525 (3)0.0201 (6)
OW1−0.0319 (4)0.33987 (10)0.7854 (3)0.0145 (5)
OW20.4360 (4)0.34394 (10)0.5912 (3)0.0180 (5)
N10.2574 (5)0.01644 (13)0.7419 (4)0.0213 (9)0.800 (7)
H1A0.32240.02710.82410.026*0.800 (7)
H1B0.21000.04920.68390.026*0.800 (7)
N20.3078 (5)−0.09776 (18)0.7994 (3)0.0141 (8)0.800 (7)
H20.3733−0.08400.87940.017*0.800 (7)
C10.2309 (6)−0.04927 (14)0.7051 (4)0.0134 (8)0.800 (7)
C60.1323 (6)−0.0728 (2)0.5772 (4)0.0150 (8)0.800 (7)
H60.0779−0.04090.50800.018*0.800 (7)
C50.1146 (6)−0.1417 (2)0.5524 (4)0.0180 (9)0.800 (7)
H50.0494−0.15740.46500.022*0.800 (7)
C40.1916 (6)−0.19022 (15)0.6546 (4)0.0161 (9)0.800 (7)
H40.1756−0.23820.63830.019*0.800 (7)
C30.2877 (6)−0.1664 (2)0.7750 (4)0.0152 (9)0.800 (7)
H30.3429−0.19800.84470.018*0.800 (7)
N1A0.161 (2)0.0179 (4)0.6157 (15)0.031 (4)*0.200 (7)
H1A10.20890.04790.67960.037*0.200 (7)
H1A20.09950.03230.53480.037*0.200 (7)
N2A0.275 (2)−0.0690 (6)0.7682 (10)0.021 (3)*0.200 (7)
H2A10.3211−0.03700.82850.025*0.200 (7)
C1A0.180 (2)−0.0492 (4)0.6414 (12)0.011 (3)*0.200 (7)
C6A0.101 (2)−0.1015 (6)0.5499 (9)0.007 (3)*0.200 (7)
H6A0.0292−0.09000.46170.009*0.200 (7)
C5A0.129 (3)−0.1687 (5)0.5876 (14)0.024 (5)*0.200 (7)
H5A0.0816−0.20390.52340.028*0.200 (7)
C4A0.227 (2)−0.1868 (5)0.7210 (16)0.020 (4)*0.200 (7)
H4A0.2377−0.23350.74980.024*0.200 (7)
C3A0.303 (2)−0.1361 (7)0.8054 (11)0.018 (4)*0.200 (7)
H3A0.3775−0.14710.89300.022*0.200 (7)
HW1A0.016 (6)0.3359 (17)0.867 (2)0.028*
HW1B−0.099 (5)0.3728 (13)0.764 (4)0.028*
HW2A0.406 (6)0.3418 (16)0.5044 (19)0.028*
HW2B0.485 (5)0.3815 (12)0.600 (4)0.028*
U11U22U33U12U13U23
Cr10.01435 (16)0.00763 (14)0.01064 (15)0.0002 (2)0.00028 (11)0.0000 (2)
C110.0265 (17)0.0098 (12)0.0212 (14)−0.0049 (11)0.0168 (13)−0.0041 (10)
C120.0276 (17)0.0154 (15)0.0190 (15)0.0026 (12)0.0138 (13)0.0021 (12)
O110.0492 (16)0.0181 (11)0.0355 (14)−0.0159 (10)0.0257 (12)−0.0135 (10)
O120.0499 (15)0.0123 (10)0.0273 (12)0.0118 (10)0.0205 (11)0.0068 (9)
O140.0220 (11)0.0174 (12)0.0157 (10)−0.0056 (9)0.0036 (9)−0.0046 (9)
O130.0271 (13)0.0100 (11)0.0181 (11)0.0048 (8)0.0071 (10)0.0029 (8)
C210.0142 (13)0.0143 (15)0.0134 (13)0.0026 (11)0.0067 (10)0.0014 (11)
C220.0155 (14)0.0128 (14)0.0167 (14)−0.0029 (11)0.0068 (11)−0.0014 (11)
O220.0213 (12)0.0118 (12)0.0133 (10)−0.0012 (8)0.0029 (9)−0.0013 (8)
O210.0150 (10)0.0115 (11)0.0126 (10)0.0021 (8)−0.0008 (8)0.0015 (8)
O240.0332 (15)0.0117 (12)0.0247 (14)0.0056 (9)0.0147 (11)0.0070 (8)
O230.0277 (13)0.0115 (11)0.0239 (13)−0.0059 (9)0.0121 (10)−0.0076 (8)
OW10.0145 (12)0.0110 (11)0.0185 (12)0.0034 (7)0.0047 (10)0.0008 (7)
OW20.0208 (14)0.0133 (12)0.0198 (12)−0.0025 (7)0.0031 (10)−0.0011 (7)
N10.0254 (17)0.0137 (14)0.0246 (16)−0.0009 (11)0.0033 (13)−0.0023 (11)
N20.0150 (15)0.0179 (19)0.0084 (13)0.0007 (12)−0.0013 (11)0.0031 (12)
C10.016 (2)0.0140 (14)0.011 (2)0.0005 (12)0.0032 (15)0.0028 (12)
C60.0124 (17)0.020 (2)0.0107 (16)0.0040 (14)−0.0026 (13)−0.0003 (15)
C50.0127 (17)0.024 (2)0.0158 (18)0.0029 (16)−0.0016 (13)−0.0073 (16)
C40.0159 (18)0.0116 (14)0.020 (2)−0.0013 (14)0.0019 (19)−0.0036 (12)
C30.0151 (18)0.0116 (17)0.0193 (19)−0.0014 (14)0.0039 (14)−0.0011 (14)
Cr1—O221.949 (2)N2—C11.364 (4)
Cr1—O131.960 (2)N2—H20.8800
Cr1—O141.962 (2)C1—C61.402 (5)
Cr1—O211.963 (2)C6—C51.363 (5)
Cr1—OW22.006 (3)C6—H60.9500
Cr1—OW12.007 (3)C5—C41.414 (5)
C11—O111.223 (4)C5—H50.9500
C11—O141.285 (4)C4—C31.337 (5)
C11—C121.545 (4)C4—H40.9500
C12—O121.233 (4)C3—H30.9500
C12—O131.285 (4)N1A—C1A1.331 (4)
C21—O241.214 (4)N1A—H1A10.8800
C21—O211.283 (4)N1A—H1A20.8800
C21—C221.545 (3)N2A—C3A1.359 (5)
C22—O231.253 (4)N2A—C1A1.363 (5)
C22—O221.278 (4)N2A—H2A10.8800
OW1—HW1A0.816 (18)C1A—C6A1.402 (5)
OW1—HW1B0.796 (18)C6A—C5A1.363 (5)
OW2—HW2A0.846 (18)C6A—H6A0.9500
OW2—HW2B0.803 (18)C5A—C4A1.414 (6)
N1—C11.331 (3)C5A—H5A0.9500
N1—H1A0.8800C4A—C3A1.337 (6)
N1—H1B0.8800C4A—H4A0.9500
N2—C31.358 (4)C3A—H3A0.9500
O22—Cr1—O1394.80 (11)C3—N2—C1122.9 (3)
O22—Cr1—O14176.23 (12)C3—N2—H2118.6
O13—Cr1—O1482.55 (9)C1—N2—H2118.6
O22—Cr1—O2183.15 (7)N1—C1—N2117.3 (4)
O13—Cr1—O21176.38 (11)N1—C1—C6125.5 (4)
O14—Cr1—O2199.63 (11)N2—C1—C6117.2 (3)
O22—Cr1—OW288.05 (9)C5—C6—C1119.8 (3)
O13—Cr1—OW291.94 (10)C5—C6—H6120.1
O14—Cr1—OW289.36 (10)C1—C6—H6120.1
O21—Cr1—OW290.98 (10)C6—C5—C4121.1 (3)
O22—Cr1—OW193.02 (9)C6—C5—H5119.5
O13—Cr1—OW190.31 (10)C4—C5—H5119.5
O14—Cr1—OW189.68 (10)C3—C4—C5117.9 (3)
O21—Cr1—OW186.82 (9)C3—C4—H4121.0
OW2—Cr1—OW1177.42 (14)C5—C4—H4121.0
O11—C11—O14126.0 (4)C4—C3—N2121.1 (3)
O11—C11—C12120.1 (3)C4—C3—H3119.4
O14—C11—C12113.9 (3)N2—C3—H3119.4
O12—C12—O13124.1 (3)C1A—N1A—H1A1120.0
O12—C12—C11122.0 (3)C1A—N1A—H1A2120.0
O13—C12—C11114.0 (3)H1A1—N1A—H1A2120.0
C11—O14—Cr1114.8 (2)C3A—N2A—C1A122.7 (4)
C12—O13—Cr1114.8 (2)C3A—N2A—H2A1118.6
O24—C21—O21125.9 (3)C1A—N2A—H2A1118.6
O24—C21—C22120.0 (4)N1A—C1A—N2A117.8 (5)
O21—C21—C22114.1 (3)N1A—C1A—C6A125.0 (5)
O23—C22—O22125.6 (4)N2A—C1A—C6A117.1 (3)
O23—C22—C21120.2 (4)C5A—C6A—C1A120.0 (4)
O22—C22—C21114.2 (3)C5A—C6A—H6A120.0
C22—O22—Cr1114.4 (2)C1A—C6A—H6A120.0
C21—O21—Cr1113.8 (2)C6A—C5A—C4A120.9 (4)
Cr1—OW1—HW1A106 (3)C6A—C5A—H5A119.6
Cr1—OW1—HW1B108 (3)C4A—C5A—H5A119.6
HW1A—OW1—HW1B117 (3)C3A—C4A—C5A117.8 (4)
Cr1—OW2—HW2A113 (3)C3A—C4A—H4A121.1
Cr1—OW2—HW2B109 (3)C5A—C4A—H4A121.1
HW2A—OW2—HW2B100 (3)C4A—C3A—N2A121.3 (4)
C1—N1—H1A120.0C4A—C3A—H3A119.4
C1—N1—H1B120.0N2A—C3A—H3A119.4
H1A—N1—H1B120.0
D—H···AD—HH···AD···AD—H···A
OW1—HW1A···O23i0.82 (2)1.86 (2)2.660 (4)166 (3)
OW1—HW1B···O11ii0.80 (2)1.92 (2)2.663 (3)156 (4)
OW2—HW2A···O24iii0.85 (2)1.78 (2)2.621 (4)172 (4)
OW2—HW2B···O12iv0.80 (2)1.95 (2)2.687 (3)153 (4)
N1—H1A···O12v0.882.333.183 (5)164
N1—H1B···O230.882.383.251 (4)171
N2—H2···O13v0.882.022.865 (3)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
OW1—HW1A⋯O23i 0.82 (2)1.86 (2)2.660 (4)166 (3)
OW1—HW1B⋯O11ii 0.80 (2)1.92 (2)2.663 (3)156 (4)
OW2—HW2A⋯O24iii 0.85 (2)1.78 (2)2.621 (4)172 (4)
OW2—HW2B⋯O12iv 0.80 (2)1.95 (2)2.687 (3)153 (4)
N1—H1A⋯O12v 0.882.333.183 (5)164
N1—H1B⋯O230.882.383.251 (4)171
N2—H2⋯O13v 0.882.022.865 (3)159

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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1.  A short history of SHELX.

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2.  4-(Dimethyl-amino)-pyridinium trans-diaqua-bis-[oxalato(2-)-κO,O]chromate(III).

Authors:  Justin Nenwa; Michel M Belombe; Jean Ngoune; Boniface P T Fokwa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-13

3.  4-Amino-pyridinium trans-diaqua-dioxalatochromate(III) monohydrate.

Authors:  Ichraf Chérif; Jawher Abdelhak; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-02

4.  2-Amino-5-chloro-pyridinium cis-diaqua-dioxalatochromate(III) sesquihydrate.

Authors:  Ichraf Chérif; Jawher Abdelhak; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-26

5.  3-Amino-pyridinium trans-diaqua-dioxalato-chromate(III).

Authors:  Ichraf Chérif; Mohamed Faouzi Zid; Malika El-Ghozzi; Daniel Avignant
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1.  Crystal structure of 4-(di-methyl-amino)-pyridinium cis-di-aqua-bis-(oxalato-κ(2) O,O')ferrate(III) hemihydrate.

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Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-07-15

2.  Pyridinium cis-diaqua-bis-(oxalato-κ(2)O,O')chromate(III).

Authors:  Justin Nenwa; Olivier Befolo; Bebga Gouet; Mohammed Mbarki; Boniface P T Fokwa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-31

3.  Pyridinium trans-di-aqua-bis-[oxalato(2-)-κ(2) O (1),O (2)]chromate(III) urea monosolvate.

Authors:  Gouet Bebga; Martin Signé; Justin Nenwa; Mohammed Mbarki; Boniface P T Fokwa
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