| Literature DB >> 27308028 |
Hiba Sehimi1, Ichraf Chérif1, Mohamed Faouzi Zid2.
Abstract
As part of our studies on the synthesis and the characterization of oxalate-bridged compounds M-ox-M (ox = oxalate dianion and M = transition metal ion), we report the crystal structure of a new oxalate-bridged Mn(II) phase, {(CH6N3)[Mn(C2O4)Cl(H2O)]·H2O} n . In the compound, a succession of Mn(II) ions (situated on inversion centers) adopting a distorted octa-hedral coordination and bridged by oxalate ligands forms parallel zigzag chains running along the c axis. These chains are inter-connected through O-H⋯O hydrogen-bonding inter-actions to form anionic layers parallel to (010). Individual layers are held together via strong hydrogen bonds involving the guanidinium cations (N-H⋯O and N-H⋯Cl) and the disordered non-coordinating water mol-ecule (O-H⋯O and O-H⋯Cl), as well as by guanidinium π-π stacking. The structural data were confirmed by IR and UV-Visible spectroscopic analysis.Entities:
Keywords: coordination polymer; crystal structure; manganese; oxalate bridge
Year: 2016 PMID: 27308028 PMCID: PMC4908543 DOI: 10.1107/S2056989016006605
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The structural unit of (I), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level for non-H atoms. [Symmetry codes: (i) −x + 1, −y + 1, −z + 1; (ii) −x + 1, −y + 1, −z.]
Figure 2View of the structure packing showing Mn–Ox–Mn chains (highlighted by a ball-and-stick model) and layers parallel to (010) (blue planes).
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.19 | 3.047 (3) | 175 |
| N1—H1 | 0.86 | 2.20 | 2.917 (3) | 140 |
| N2—H2 | 0.86 | 2.85 | 3.509 (3) | 135 |
| N2—H2 | 0.86 | 2.56 | 3.357 (2) | 154 |
| N2—H2 | 0.86 | 2.38 | 3.054 (3) | 135 |
| N3—H3 | 0.86 | 2.00 | 2.854 (3) | 172 |
| N3—H3 | 0.86 | 2.57 | 3.363 (3) | 154 |
| O | 0.85 (1) | 1.96 (1) | 2.793 (4) | 170 (3) |
| O | 0.85 (1) | 1.82 (2) | 2.643 (11) | 165 (3) |
| O | 0.84 (1) | 2.06 (1) | 2.890 (3) | 176 (3) |
| O | 0.85 (1) | 2.18 (2) | 3.005 (5) | 165 (5) |
| O | 0.85 (1) | 2.61 (3) | 3.319 (6) | 142 (4) |
| O | 0.85 (1) | 2.42 (11) | 2.840 (10) | 112 (9) |
| O | 0.86 (1) | 2.81 (1) | 3.656 (18) | 172 (11) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .
Figure 3View of the hydrogen bonds developed by both coordinating (blue dashed lines) and non-coordinating (green dashed lines) water molecules. [Symmetry codes: (i) x, y − 1, z; (v) −x + 2, −y + 1, -z; (vi) −x + 2, −y + 2, −z.]
Figure 4N—H⋯O and N—H⋯Cl hydrogen-bonding interactions developed by the guanidinium cations (dashed lines) in (I). Non-coordinating water molecules and hydrogen atoms of coordinating water molecules are omitted for clarity. [Symmetry codes: (i) x, y − 1, z; (ii) x − 1, y, z; (iii) −x + 1, −y + 1, −z + 1; (iv) −x + 1, −y, −z + 1.]
Figure 5π–π stacking interactions (orange dashed lines) between adjacent organic cations. [Symmetry code: (i) −x, −y, −z + 1.]
IR data (cm−1) for (I)
| Wavenumber | Assignment |
|---|---|
| 521 | ν(Mn—Cl) |
| 605 | ν(Mn—O) |
| 793 | δ(COO) |
| 1312, 1409 | νs(COO) |
| 1657 | νas(COO) |
| 2352 | ν(N—H⋯O) |
| 3182 | νs(NH2) |
| 3390 | ν(OH)(H2O) / νas(NH2) |
Figure 6The IR spectrum of (I) in KBr.
UV–Vis data (nm) for (I)
| Wavelength | Assignment |
|---|---|
| 206 | π→π* |
| 240 | MLCT |
| 329 |
|
Figure 7The UV–Vis spectrum of (I) in water. The insert is an expansion of the visible region.
Experimental details
| Crystal data | |
| Chemical formula | (CH6N3)[Mn(C2O4)Cl(H2O)]·H2O |
|
| 274.53 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 298 |
|
| 6.740 (5), 7.514 (7), 9.810 (2) |
| α, β, γ (°) | 84.46 (3), 78.15 (4), 88.57 (6) |
|
| 484.0 (6) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 1.65 |
| Crystal size (mm) | 0.50 × 0.43 × 0.34 |
| Data collection | |
| Diffractometer | Enraf–Nonius CAD-4 |
| Absorption correction | ψ scan (North |
|
| 0.551, 0.718 |
| No. of measured, independent and observed [ | 4226, 2114, 2018 |
|
| 0.016 |
| (sin θ/λ)max (Å−1) | 0.638 |
| Refinement | |
|
| 0.024, 0.065, 1.10 |
| No. of reflections | 2114 |
| No. of parameters | 155 |
| No. of restraints | 11 |
| H-atom treatment | H-atom parameters not refined |
| Δρmax, Δρmin (e Å−3) | 0.39, −0.30 |
Computer programs: CAD-4 EXPRESS (Duisenberg, 1992 ▸), XCAD4 (Harms & Wocadlo, 1995 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), DIAMOND (Brandenburg, 2006 ▸), WinGX (Farrugia, 2012 ▸) and publCIF (Westrip, 2010 ▸).
| (CH6N3)[Mn(C2O4)Cl(H2O)]·H2O | |
| Triclinic, | |
| Mo | |
| Cell parameters from 25 reflections | |
| θ = 10–15° | |
| α = 84.46 (3)° | µ = 1.65 mm−1 |
| β = 78.15 (4)° | |
| γ = 88.57 (6)° | Prism, colourless |
| 0.50 × 0.43 × 0.34 mm |
| Enraf–Nonius CAD-4 diffractometer | |
| Radiation source: fine-focus sealed tube | θmax = 27.0°, θmin = 2.1° |
| ω/2θ scans | |
| Absorption correction: ψ scan (North | |
| 4226 measured reflections | 2 standard reflections every 120 reflections |
| 2114 independent reflections | intensity decay: 1.4% |
| 2018 reflections with |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters not refined | |
| 2114 reflections | (Δ/σ)max = 0.001 |
| 155 parameters | Δρmax = 0.39 e Å−3 |
| 11 restraints | Δρmin = −0.30 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| Mn1 | 0.72543 (3) | 0.49656 (3) | 0.22092 (2) | 0.02231 (9) | |
| Cl1 | 1.03175 (7) | 0.65970 (6) | 0.23354 (5) | 0.03534 (12) | |
| N2 | 0.1713 (2) | 0.28093 (18) | 0.43164 (16) | 0.0312 (3) | |
| H2B | 0.1064 | 0.3297 | 0.5036 | 0.037* | |
| H2A | 0.1950 | 0.3411 | 0.3509 | 0.037* | |
| O4 | 0.47159 (18) | 0.36133 (16) | 0.15474 (12) | 0.0285 (2) | |
| O2 | 0.50953 (17) | 0.66001 (14) | 0.35754 (11) | 0.0247 (2) | |
| N1 | 0.3354 (3) | 0.03734 (19) | 0.33501 (16) | 0.0351 (3) | |
| H1A | 0.3768 | −0.0715 | 0.3441 | 0.042* | |
| H1B | 0.3592 | 0.0972 | 0.2542 | 0.042* | |
| O3 | 0.69372 (19) | 0.63896 (16) | 0.02047 (12) | 0.0286 (2) | |
| O1 | 0.66931 (18) | 0.34160 (15) | 0.42455 (11) | 0.0268 (2) | |
| OW1 | 0.9107 (2) | 0.26878 (18) | 0.14629 (14) | 0.0367 (3) | |
| HW1 | 0.854 (3) | 0.189 (3) | 0.112 (2) | 0.055* | |
| HW2 | 1.027 (2) | 0.290 (3) | 0.100 (2) | 0.055* | |
| C1 | 0.4541 (2) | 0.59228 (18) | 0.48007 (15) | 0.0198 (3) | |
| N3 | 0.1977 (2) | 0.02218 (19) | 0.56968 (16) | 0.0326 (3) | |
| H3A | 0.2386 | −0.0867 | 0.5796 | 0.039* | |
| H3B | 0.1323 | 0.0721 | 0.6409 | 0.039* | |
| C2 | 0.4359 (2) | 0.41972 (19) | 0.03918 (15) | 0.0221 (3) | |
| C3 | 0.2351 (2) | 0.1125 (2) | 0.44522 (17) | 0.0253 (3) | |
| OW2 | 0.7198 (6) | 1.0392 (5) | 0.0066 (7) | 0.0831 (13) | 0.816 (13) |
| HW3 | 0.719 (8) | 0.9263 (18) | 0.025 (5) | 0.125* | 0.816 (13) |
| HW4 | 0.793 (7) | 1.067 (6) | −0.074 (3) | 0.125* | 0.816 (13) |
| OW2B | 0.712 (2) | 0.9962 (16) | 0.089 (2) | 0.061 (5) | 0.184 (13) |
| HW5 | 0.637 (17) | 0.955 (12) | 0.039 (9) | 0.091* | 0.184 (13) |
| HW6 | 0.79 (2) | 0.912 (12) | 0.115 (14) | 0.091* | 0.184 (13) |
| Mn1 | 0.02388 (14) | 0.02454 (14) | 0.01771 (13) | −0.00049 (9) | −0.00325 (9) | 0.00002 (9) |
| Cl1 | 0.0292 (2) | 0.0383 (2) | 0.0387 (2) | −0.00641 (17) | −0.00517 (17) | −0.00671 (17) |
| N2 | 0.0365 (8) | 0.0223 (6) | 0.0341 (7) | 0.0016 (6) | −0.0084 (6) | 0.0032 (5) |
| O4 | 0.0324 (6) | 0.0304 (6) | 0.0219 (5) | −0.0077 (5) | −0.0073 (5) | 0.0071 (4) |
| O2 | 0.0291 (6) | 0.0231 (5) | 0.0197 (5) | 0.0029 (4) | −0.0024 (4) | 0.0026 (4) |
| N1 | 0.0438 (9) | 0.0241 (7) | 0.0340 (8) | 0.0004 (6) | −0.0024 (7) | 0.0019 (6) |
| O3 | 0.0299 (6) | 0.0319 (6) | 0.0242 (5) | −0.0109 (5) | −0.0080 (5) | 0.0039 (4) |
| O1 | 0.0327 (6) | 0.0224 (5) | 0.0217 (5) | 0.0075 (4) | 0.0008 (4) | 0.0007 (4) |
| OW1 | 0.0333 (7) | 0.0356 (7) | 0.0377 (7) | 0.0004 (5) | 0.0032 (6) | −0.0080 (5) |
| C1 | 0.0211 (7) | 0.0174 (7) | 0.0208 (7) | −0.0008 (5) | −0.0048 (5) | 0.0000 (5) |
| N3 | 0.0401 (8) | 0.0230 (7) | 0.0332 (7) | 0.0021 (6) | −0.0074 (6) | 0.0036 (6) |
| C2 | 0.0231 (7) | 0.0222 (7) | 0.0194 (7) | −0.0006 (6) | −0.0015 (6) | 0.0000 (5) |
| C3 | 0.0244 (7) | 0.0202 (7) | 0.0326 (8) | −0.0043 (6) | −0.0101 (6) | 0.0019 (6) |
| OW2 | 0.123 (3) | 0.0459 (16) | 0.076 (3) | −0.0154 (15) | −0.002 (2) | −0.0180 (19) |
| OW2B | 0.078 (8) | 0.031 (5) | 0.067 (11) | −0.012 (5) | 0.009 (6) | −0.020 (6) |
| Mn1—O1 | 2.1798 (14) | O1—C1ii | 1.251 (2) |
| Mn1—OW1 | 2.187 (2) | OW1—HW1 | 0.846 (9) |
| Mn1—O3 | 2.1936 (13) | OW1—HW2 | 0.835 (9) |
| Mn1—O2 | 2.2024 (18) | C1—O1ii | 1.251 (2) |
| Mn1—O4 | 2.2476 (19) | C1—C1ii | 1.552 (3) |
| Mn1—Cl1 | 2.4581 (19) | N3—C3 | 1.318 (2) |
| N2—C3 | 1.329 (2) | N3—H3A | 0.8600 |
| N2—H2B | 0.8600 | N3—H3B | 0.8600 |
| N2—H2A | 0.8600 | C2—O3i | 1.257 (2) |
| O4—C2 | 1.2434 (19) | C2—C2i | 1.547 (3) |
| O2—C1 | 1.2451 (19) | OW2—HW3 | 0.850 (10) |
| N1—C3 | 1.321 (2) | OW2—HW4 | 0.849 (10) |
| N1—H1A | 0.8600 | OW2B—HW5 | 0.851 (10) |
| N1—H1B | 0.8600 | OW2B—HW6 | 0.856 (10) |
| O3—C2i | 1.257 (2) | ||
| O1—Mn1—OW1 | 85.68 (7) | C3—N1—H1B | 120.0 |
| O1—Mn1—O3 | 164.34 (5) | H1A—N1—H1B | 120.0 |
| OW1—Mn1—O3 | 100.06 (7) | C2i—O3—Mn1 | 116.88 (11) |
| O1—Mn1—O2 | 75.35 (7) | C1ii—O1—Mn1 | 116.15 (10) |
| OW1—Mn1—O2 | 160.68 (5) | Mn1—OW1—HW1 | 117.6 (17) |
| O3—Mn1—O2 | 97.39 (6) | Mn1—OW1—HW2 | 117.3 (17) |
| O1—Mn1—O4 | 92.12 (7) | HW1—OW1—HW2 | 111.4 (15) |
| OW1—Mn1—O4 | 85.45 (8) | O2—C1—O1ii | 126.35 (14) |
| O3—Mn1—O4 | 73.99 (6) | O2—C1—C1ii | 117.50 (16) |
| O2—Mn1—O4 | 91.49 (7) | O1ii—C1—C1ii | 116.15 (16) |
| O1—Mn1—Cl1 | 100.46 (6) | C3—N3—H3A | 120.0 |
| OW1—Mn1—Cl1 | 90.50 (7) | C3—N3—H3B | 120.0 |
| O3—Mn1—Cl1 | 94.08 (6) | H3A—N3—H3B | 120.0 |
| O2—Mn1—Cl1 | 96.47 (7) | O4—C2—O3i | 126.48 (15) |
| O4—Mn1—Cl1 | 166.46 (3) | O4—C2—C2i | 116.80 (17) |
| C3—N2—H2B | 120.0 | O3i—C2—C2i | 116.73 (16) |
| C3—N2—H2A | 120.0 | N3—C3—N1 | 120.57 (16) |
| H2B—N2—H2A | 120.0 | N3—C3—N2 | 119.27 (16) |
| C2—O4—Mn1 | 115.50 (11) | N1—C3—N2 | 120.16 (16) |
| C1—O2—Mn1 | 114.82 (10) | HW3—OW2—HW4 | 109.7 (17) |
| C3—N1—H1A | 120.0 | HW5—OW2B—HW6 | 108.7 (18) |
| H··· | ||||
| N1—H1 | 0.86 | 2.19 | 3.047 (3) | 175 |
| N1—H1 | 0.86 | 2.20 | 2.917 (3) | 140 |
| N2—H2 | 0.86 | 2.85 | 3.509 (3) | 135 |
| N2—H2 | 0.86 | 2.56 | 3.357 (2) | 154 |
| N2—H2 | 0.86 | 2.38 | 3.054 (3) | 135 |
| N3—H3 | 0.86 | 2.00 | 2.854 (3) | 172 |
| N3—H3 | 0.86 | 2.57 | 3.363 (3) | 154 |
| O | 0.85 (1) | 1.96 (1) | 2.793 (4) | 170 (3) |
| O | 0.85 (1) | 1.82 (2) | 2.643 (11) | 165 (3) |
| O | 0.84 (1) | 2.06 (1) | 2.890 (3) | 176 (3) |
| O | 0.85 (1) | 2.17 (2) | 3.005 (5) | 165 (5) |
| O | 0.85 (1) | 2.61 (3) | 3.319 (6) | 142 (4) |
| O | 0.85 (1) | 2.42 (11) | 2.840 (10) | 112 (9) |
| O | 0.86 (1) | 2.81 (1) | 3.656 (18) | 172 (11) |