| Literature DB >> 21582480 |
Hoong-Kun Fun, Jain John, Samuel Robinson Jebas, T Balasubramanian.
Abstract
In the title compound, 2C(5)H(7)N(2) (+)·2C(2)HO(4) (-)·H(2)O, the asymmetric unit consists of an amino-pyridinium cation, an oxalic actetate anion and a half-molecule of water, which lies on a two-fold rotation axis. The crystal packing is consolidated by inter-molecular O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds. The mol-ecules are linked into an infinite one dimensional chain along [010].Entities:
Year: 2009 PMID: 21582480 PMCID: PMC2968938 DOI: 10.1107/S1600536809007247
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C5H7N2+·2C2HO4−·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 7009 reflections |
| θ = 2.7–38.8° | |
| µ = 0.13 mm−1 | |
| β = 105.617 (2)° | Plate, colourless |
| 0.49 × 0.34 × 0.11 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 2467 independent reflections |
| Radiation source: fine-focus sealed tube | 2159 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.0°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 12438 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| All H-atom parameters refined | |
| 2467 reflections | (Δ/σ)max < 0.001 |
| 159 parameters | Δρmax = 0.35 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.50462 (4) | −0.16951 (12) | 0.39445 (3) | 0.01643 (15) | |
| O2 | 0.59652 (5) | −0.02380 (12) | 0.49260 (3) | 0.01700 (16) | |
| O3 | 0.55682 (5) | 0.41624 (12) | 0.44228 (4) | 0.02023 (17) | |
| O4 | 0.45356 (5) | 0.26647 (12) | 0.35138 (3) | 0.01903 (16) | |
| N1 | 0.18206 (5) | 0.86694 (16) | 0.57611 (4) | 0.01960 (18) | |
| N2 | 0.39056 (6) | 1.06075 (16) | 0.74035 (4) | 0.01829 (17) | |
| C1 | 0.20886 (7) | 0.72101 (18) | 0.63132 (5) | 0.0199 (2) | |
| C2 | 0.27784 (6) | 0.77998 (18) | 0.68707 (5) | 0.01844 (19) | |
| C3 | 0.32276 (6) | 0.99712 (16) | 0.68737 (5) | 0.01467 (18) | |
| C4 | 0.29134 (6) | 1.14587 (17) | 0.62850 (5) | 0.01667 (19) | |
| C5 | 0.22175 (6) | 1.07631 (18) | 0.57489 (5) | 0.0188 (2) | |
| C6 | 0.54297 (6) | 0.00122 (16) | 0.43617 (4) | 0.01357 (17) | |
| C7 | 0.51411 (6) | 0.25017 (16) | 0.40655 (5) | 0.01471 (18) | |
| O1W | 0.5000 | 0.46896 (19) | 0.7500 | 0.0215 (2) | |
| H2W1 | 0.5135 (12) | 0.560 (3) | 0.7190 (9) | 0.048 (5)* | |
| H1 | 0.1765 (9) | 0.574 (3) | 0.6285 (7) | 0.028 (3)* | |
| H2 | 0.2966 (9) | 0.673 (3) | 0.7268 (8) | 0.029 (4)* | |
| H4 | 0.3195 (9) | 1.295 (3) | 0.6250 (7) | 0.023 (3)* | |
| H5 | 0.1983 (9) | 1.169 (2) | 0.5344 (7) | 0.021 (3)* | |
| H1N2 | 0.4086 (10) | 0.968 (3) | 0.7766 (8) | 0.028 (4)* | |
| H2N2 | 0.4168 (9) | 1.197 (3) | 0.7367 (7) | 0.025 (3)* | |
| H1N1 | 0.1413 (11) | 0.823 (3) | 0.5397 (9) | 0.038 (4)* | |
| H1O1 | 0.5253 (12) | −0.327 (4) | 0.4140 (9) | 0.054 (5)* |
| O1 | 0.0207 (3) | 0.0102 (3) | 0.0151 (3) | 0.0000 (2) | −0.0007 (2) | −0.0013 (2) |
| O2 | 0.0197 (3) | 0.0137 (3) | 0.0141 (3) | 0.0009 (2) | −0.0014 (3) | 0.0004 (2) |
| O3 | 0.0259 (4) | 0.0109 (3) | 0.0186 (3) | −0.0014 (2) | −0.0033 (3) | −0.0011 (2) |
| O4 | 0.0249 (4) | 0.0141 (3) | 0.0136 (3) | 0.0010 (2) | −0.0027 (3) | 0.0007 (2) |
| N1 | 0.0176 (4) | 0.0215 (4) | 0.0160 (4) | −0.0005 (3) | −0.0017 (3) | −0.0030 (3) |
| N2 | 0.0178 (4) | 0.0182 (4) | 0.0152 (4) | −0.0017 (3) | −0.0019 (3) | 0.0011 (3) |
| C1 | 0.0196 (4) | 0.0165 (5) | 0.0221 (5) | −0.0023 (3) | 0.0031 (4) | −0.0012 (3) |
| C2 | 0.0192 (4) | 0.0166 (4) | 0.0176 (4) | −0.0011 (3) | 0.0017 (3) | 0.0028 (3) |
| C3 | 0.0149 (4) | 0.0143 (4) | 0.0140 (4) | 0.0012 (3) | 0.0022 (3) | −0.0006 (3) |
| C4 | 0.0177 (4) | 0.0143 (4) | 0.0165 (4) | 0.0008 (3) | 0.0019 (3) | 0.0017 (3) |
| C5 | 0.0182 (4) | 0.0205 (5) | 0.0152 (4) | 0.0032 (3) | 0.0002 (3) | 0.0025 (3) |
| C6 | 0.0158 (4) | 0.0112 (4) | 0.0133 (4) | −0.0001 (3) | 0.0032 (3) | −0.0002 (3) |
| C7 | 0.0188 (4) | 0.0112 (4) | 0.0132 (4) | 0.0003 (3) | 0.0027 (3) | 0.0002 (3) |
| O1W | 0.0307 (6) | 0.0146 (5) | 0.0188 (5) | 0.000 | 0.0061 (4) | 0.000 |
| O1—C6 | 1.3139 (11) | C1—C2 | 1.3654 (13) |
| O1—H1O1 | 1.00 (2) | C1—H1 | 0.973 (15) |
| O2—C6 | 1.2155 (11) | C2—C3 | 1.4211 (13) |
| O3—C7 | 1.2611 (11) | C2—H2 | 0.979 (15) |
| O4—C7 | 1.2458 (11) | C3—C4 | 1.4221 (12) |
| N1—C5 | 1.3471 (14) | C4—C5 | 1.3621 (13) |
| N1—C1 | 1.3514 (13) | C4—H4 | 0.966 (15) |
| N1—H1N1 | 0.863 (17) | C5—H5 | 0.951 (13) |
| N2—C3 | 1.3291 (12) | C6—C7 | 1.5547 (13) |
| N2—H1N2 | 0.877 (15) | O1W—H2W1 | 0.874 (18) |
| N2—H2N2 | 0.890 (16) | ||
| C6—O1—H1O1 | 111.9 (11) | N2—C3—C4 | 121.12 (9) |
| C5—N1—C1 | 121.00 (8) | C2—C3—C4 | 116.98 (8) |
| C5—N1—H1N1 | 118.7 (11) | C5—C4—C3 | 119.91 (9) |
| C1—N1—H1N1 | 120.2 (11) | C5—C4—H4 | 118.8 (8) |
| C3—N2—H1N2 | 120.1 (10) | C3—C4—H4 | 121.3 (8) |
| C3—N2—H2N2 | 117.4 (9) | N1—C5—C4 | 121.21 (9) |
| H1N2—N2—H2N2 | 122.5 (13) | N1—C5—H5 | 115.6 (8) |
| N1—C1—C2 | 120.95 (9) | C4—C5—H5 | 123.2 (9) |
| N1—C1—H1 | 116.1 (8) | O2—C6—O1 | 125.55 (8) |
| C2—C1—H1 | 123.0 (8) | O2—C6—C7 | 121.00 (8) |
| C1—C2—C3 | 119.93 (9) | O1—C6—C7 | 113.45 (7) |
| C1—C2—H2 | 120.2 (9) | O4—C7—O3 | 127.09 (8) |
| C3—C2—H2 | 119.9 (9) | O4—C7—C6 | 118.46 (8) |
| N2—C3—C2 | 121.90 (9) | O3—C7—C6 | 114.44 (8) |
| C5—N1—C1—C2 | −0.98 (15) | C1—N1—C5—C4 | 1.41 (15) |
| N1—C1—C2—C3 | −0.29 (15) | C3—C4—C5—N1 | −0.56 (15) |
| C1—C2—C3—N2 | −179.57 (9) | O2—C6—C7—O4 | −173.95 (8) |
| C1—C2—C3—C4 | 1.08 (14) | O1—C6—C7—O4 | 6.47 (12) |
| N2—C3—C4—C5 | 179.98 (9) | O2—C6—C7—O3 | 6.58 (13) |
| C2—C3—C4—C5 | −0.67 (14) | O1—C6—C7—O3 | −173.00 (8) |
| H··· | ||||
| O1W—H2W1···O4i | 0.874 (18) | 1.895 (18) | 2.7676 (9) | 175.0 (18) |
| N2—H1N2···O4ii | 0.877 (15) | 1.983 (16) | 2.8556 (11) | 173.4 (14) |
| N2—H2N2···O1Wiii | 0.890 (16) | 1.993 (15) | 2.8620 (12) | 164.8 (13) |
| N1—H1N1···O3iv | 0.863 (17) | 2.100 (17) | 2.8645 (11) | 147.3 (15) |
| N1—H1N1···O2iv | 0.863 (17) | 2.218 (17) | 2.8818 (11) | 133.6 (15) |
| O1—H1O1···O3v | 1.00 (2) | 1.60 (2) | 2.5916 (10) | 177.6 (18) |
| C5—H5···O2vi | 0.951 (13) | 2.361 (14) | 3.1585 (12) | 141.2 (11) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.874 (18) | 1.895 (18) | 2.7676 (9) | 175.0 (18) |
| N2—H1 | 0.877 (15) | 1.983 (16) | 2.8556 (11) | 173.4 (14) |
| N2—H2 | 0.890 (16) | 1.993 (15) | 2.8620 (12) | 164.8 (13) |
| N1—H1 | 0.863 (17) | 2.100 (17) | 2.8645 (11) | 147.3 (15) |
| N1—H1 | 0.863 (17) | 2.218 (17) | 2.8818 (11) | 133.6 (15) |
| O1—H1 | 1.00 (2) | 1.60 (2) | 2.5916 (10) | 177.6 (18) |
| C5—H5⋯O2vi | 0.951 (13) | 2.361 (14) | 3.1585 (12) | 141.2 (11) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .