Literature DB >> 21582480

Bis(4-amino-pyridinium) bis(hydrogen oxalate) monohydrate.

Hoong-Kun Fun, Jain John, Samuel Robinson Jebas, T Balasubramanian.   

Abstract

In the title compound, 2C(5)H(7)N(2) (+)·2C(2)HO(4) (-)·H(2)O, the asymmetric unit consists of an amino-pyridinium cation, an oxalic actetate anion and a half-molecule of water, which lies on a two-fold rotation axis. The crystal packing is consolidated by inter-molecular O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds. The mol-ecules are linked into an infinite one dimensional chain along [010].

Entities:  

Year:  2009        PMID: 21582480      PMCID: PMC2968938          DOI: 10.1107/S1600536809007247

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 4-amino­pyridine, see: Judge & Bever (2006 ▶); Schwid et al. (1997 ▶); Strupp et al. (2004 ▶). For the structure of oxalic acid, see: Derissen & Smith (1974 ▶). For related structures, see: Anderson et al. (2005 ▶); Bhattacharya et al. (1994 ▶); Chao & Schempp (1977 ▶); Karle et al. (2003 ▶). For stability of the temperature controller, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

2C5H7N2 +·2C2HO4 −·H2O M = 386.32 Monoclinic, a = 15.6429 (6) Å b = 5.6929 (2) Å c = 19.9091 (7) Å β = 105.617 (2)° V = 1707.52 (11) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 100 K 0.49 × 0.34 × 0.11 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.906, T max = 0.986 12438 measured reflections 2467 independent reflections 2159 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.096 S = 1.03 2467 reflections 159 parameters All H-atom parameters refined Δρmax = 0.35 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809007247/at2732sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809007247/at2732Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C5H7N2+·2C2HO4·H2OF(000) = 808
Mr = 386.32Dx = 1.503 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 7009 reflections
a = 15.6429 (6) Åθ = 2.7–38.8°
b = 5.6929 (2) ŵ = 0.13 mm1
c = 19.9091 (7) ÅT = 100 K
β = 105.617 (2)°Plate, colourless
V = 1707.52 (11) Å30.49 × 0.34 × 0.11 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer2467 independent reflections
Radiation source: fine-focus sealed tube2159 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 30.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −22→21
Tmin = 0.906, Tmax = 0.986k = −7→7
12438 measured reflectionsl = −27→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096All H-atom parameters refined
S = 1.03w = 1/[σ2(Fo2) + (0.0564P)2 + 0.8323P] where P = (Fo2 + 2Fc2)/3
2467 reflections(Δ/σ)max < 0.001
159 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.24 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.50462 (4)−0.16951 (12)0.39445 (3)0.01643 (15)
O20.59652 (5)−0.02380 (12)0.49260 (3)0.01700 (16)
O30.55682 (5)0.41624 (12)0.44228 (4)0.02023 (17)
O40.45356 (5)0.26647 (12)0.35138 (3)0.01903 (16)
N10.18206 (5)0.86694 (16)0.57611 (4)0.01960 (18)
N20.39056 (6)1.06075 (16)0.74035 (4)0.01829 (17)
C10.20886 (7)0.72101 (18)0.63132 (5)0.0199 (2)
C20.27784 (6)0.77998 (18)0.68707 (5)0.01844 (19)
C30.32276 (6)0.99712 (16)0.68737 (5)0.01467 (18)
C40.29134 (6)1.14587 (17)0.62850 (5)0.01667 (19)
C50.22175 (6)1.07631 (18)0.57489 (5)0.0188 (2)
C60.54297 (6)0.00122 (16)0.43617 (4)0.01357 (17)
C70.51411 (6)0.25017 (16)0.40655 (5)0.01471 (18)
O1W0.50000.46896 (19)0.75000.0215 (2)
H2W10.5135 (12)0.560 (3)0.7190 (9)0.048 (5)*
H10.1765 (9)0.574 (3)0.6285 (7)0.028 (3)*
H20.2966 (9)0.673 (3)0.7268 (8)0.029 (4)*
H40.3195 (9)1.295 (3)0.6250 (7)0.023 (3)*
H50.1983 (9)1.169 (2)0.5344 (7)0.021 (3)*
H1N20.4086 (10)0.968 (3)0.7766 (8)0.028 (4)*
H2N20.4168 (9)1.197 (3)0.7367 (7)0.025 (3)*
H1N10.1413 (11)0.823 (3)0.5397 (9)0.038 (4)*
H1O10.5253 (12)−0.327 (4)0.4140 (9)0.054 (5)*
U11U22U33U12U13U23
O10.0207 (3)0.0102 (3)0.0151 (3)0.0000 (2)−0.0007 (2)−0.0013 (2)
O20.0197 (3)0.0137 (3)0.0141 (3)0.0009 (2)−0.0014 (3)0.0004 (2)
O30.0259 (4)0.0109 (3)0.0186 (3)−0.0014 (2)−0.0033 (3)−0.0011 (2)
O40.0249 (4)0.0141 (3)0.0136 (3)0.0010 (2)−0.0027 (3)0.0007 (2)
N10.0176 (4)0.0215 (4)0.0160 (4)−0.0005 (3)−0.0017 (3)−0.0030 (3)
N20.0178 (4)0.0182 (4)0.0152 (4)−0.0017 (3)−0.0019 (3)0.0011 (3)
C10.0196 (4)0.0165 (5)0.0221 (5)−0.0023 (3)0.0031 (4)−0.0012 (3)
C20.0192 (4)0.0166 (4)0.0176 (4)−0.0011 (3)0.0017 (3)0.0028 (3)
C30.0149 (4)0.0143 (4)0.0140 (4)0.0012 (3)0.0022 (3)−0.0006 (3)
C40.0177 (4)0.0143 (4)0.0165 (4)0.0008 (3)0.0019 (3)0.0017 (3)
C50.0182 (4)0.0205 (5)0.0152 (4)0.0032 (3)0.0002 (3)0.0025 (3)
C60.0158 (4)0.0112 (4)0.0133 (4)−0.0001 (3)0.0032 (3)−0.0002 (3)
C70.0188 (4)0.0112 (4)0.0132 (4)0.0003 (3)0.0027 (3)0.0002 (3)
O1W0.0307 (6)0.0146 (5)0.0188 (5)0.0000.0061 (4)0.000
O1—C61.3139 (11)C1—C21.3654 (13)
O1—H1O11.00 (2)C1—H10.973 (15)
O2—C61.2155 (11)C2—C31.4211 (13)
O3—C71.2611 (11)C2—H20.979 (15)
O4—C71.2458 (11)C3—C41.4221 (12)
N1—C51.3471 (14)C4—C51.3621 (13)
N1—C11.3514 (13)C4—H40.966 (15)
N1—H1N10.863 (17)C5—H50.951 (13)
N2—C31.3291 (12)C6—C71.5547 (13)
N2—H1N20.877 (15)O1W—H2W10.874 (18)
N2—H2N20.890 (16)
C6—O1—H1O1111.9 (11)N2—C3—C4121.12 (9)
C5—N1—C1121.00 (8)C2—C3—C4116.98 (8)
C5—N1—H1N1118.7 (11)C5—C4—C3119.91 (9)
C1—N1—H1N1120.2 (11)C5—C4—H4118.8 (8)
C3—N2—H1N2120.1 (10)C3—C4—H4121.3 (8)
C3—N2—H2N2117.4 (9)N1—C5—C4121.21 (9)
H1N2—N2—H2N2122.5 (13)N1—C5—H5115.6 (8)
N1—C1—C2120.95 (9)C4—C5—H5123.2 (9)
N1—C1—H1116.1 (8)O2—C6—O1125.55 (8)
C2—C1—H1123.0 (8)O2—C6—C7121.00 (8)
C1—C2—C3119.93 (9)O1—C6—C7113.45 (7)
C1—C2—H2120.2 (9)O4—C7—O3127.09 (8)
C3—C2—H2119.9 (9)O4—C7—C6118.46 (8)
N2—C3—C2121.90 (9)O3—C7—C6114.44 (8)
C5—N1—C1—C2−0.98 (15)C1—N1—C5—C41.41 (15)
N1—C1—C2—C3−0.29 (15)C3—C4—C5—N1−0.56 (15)
C1—C2—C3—N2−179.57 (9)O2—C6—C7—O4−173.95 (8)
C1—C2—C3—C41.08 (14)O1—C6—C7—O46.47 (12)
N2—C3—C4—C5179.98 (9)O2—C6—C7—O36.58 (13)
C2—C3—C4—C5−0.67 (14)O1—C6—C7—O3−173.00 (8)
D—H···AD—HH···AD···AD—H···A
O1W—H2W1···O4i0.874 (18)1.895 (18)2.7676 (9)175.0 (18)
N2—H1N2···O4ii0.877 (15)1.983 (16)2.8556 (11)173.4 (14)
N2—H2N2···O1Wiii0.890 (16)1.993 (15)2.8620 (12)164.8 (13)
N1—H1N1···O3iv0.863 (17)2.100 (17)2.8645 (11)147.3 (15)
N1—H1N1···O2iv0.863 (17)2.218 (17)2.8818 (11)133.6 (15)
O1—H1O1···O3v1.00 (2)1.60 (2)2.5916 (10)177.6 (18)
C5—H5···O2vi0.951 (13)2.361 (14)3.1585 (12)141.2 (11)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H2W1⋯O4i0.874 (18)1.895 (18)2.7676 (9)175.0 (18)
N2—H1N2⋯O4ii0.877 (15)1.983 (16)2.8556 (11)173.4 (14)
N2—H2N2⋯O1Wiii0.890 (16)1.993 (15)2.8620 (12)164.8 (13)
N1—H1N1⋯O3iv0.863 (17)2.100 (17)2.8645 (11)147.3 (15)
N1—H1N1⋯O2iv0.863 (17)2.218 (17)2.8818 (11)133.6 (15)
O1—H1O1⋯O3v1.00 (2)1.60 (2)2.5916 (10)177.6 (18)
C5—H5⋯O2vi0.951 (13)2.361 (14)3.1585 (12)141.2 (11)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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