Literature DB >> 21200568

Bis(4-amino-pyridinium) bis-(oxalato-κO,O')cuprate(II) dihydrate.

Zi-Cai Pan, Kou-Lin Zhang, Seik Weng Ng.   

Abstract

The Cu(II) atom in the title salt, (C(5)H(7)N(2))(2)[Cu(C(2)O(4))(2)]·2H(2)O, is located on a center of inversion and is chelated by two oxalate groups in a square-planar coordination geometry. The cation, anion and water mol-ecules inter-act through hydrogen bonds, forming a three-dimensional hydrogen-bonded network.

Entities:  

Year:  2007        PMID: 21200568      PMCID: PMC2915147          DOI: 10.1107/S160053680706117X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

See Geiser et al. (1987 ▶) for the square-planar pyridinium dioxalatocuprate(II) oxalic acid co-crystal. See Sun et al. (2004 ▶) for 2,6-bis­(4′-pyridyl-1′-pyridinium)pyrazine bis­(bis­(oxalato)cuprate(II), which is also square planar. In bis­(2-amino­anilinium) bis­(oxalato)cuprate(II), the amino groups coordinate to the metal atom, which exhibits octa­hedral coordination (Keene et al., 2003 ▶).

Experimental

Crystal data

(C5H7N2)2[Cu(C2O4)2]·2H2O M = 465.86 Monoclinic, a = 3.7105 (3) Å b = 20.311 (1) Å c = 11.9261 (9) Å β = 90.450 (1)° V = 898.8 (1) Å3 Z = 2 Mo Kα radiation μ = 1.28 mm−1 T = 295 (2) K 0.14 × 0.10 × 0.08 mm

Data collection

Bruker SMART area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.764, T max = 0.905 2623 measured reflections 1590 independent reflections 1498 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.109 S = 1.12 1590 reflections 153 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.49 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680706117X/xu2384sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680706117X/xu2384Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C5H7N2)2[Cu(C2O4)2]·2H2OF000 = 478
Mr = 465.86Dx = 1.721 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2198 reflections
a = 3.7105 (3) Åθ = 2.0–25.1º
b = 20.311 (1) ŵ = 1.28 mm1
c = 11.9261 (9) ÅT = 295 (2) K
β = 90.450 (1)ºBlock, blue
V = 898.8 (1) Å30.14 × 0.10 × 0.08 mm
Z = 2
Bruker SMART area-detector diffractometer1590 independent reflections
Radiation source: fine-focus sealed tube1498 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.016
T = 295(2) Kθmax = 25.1º
φ and ω scansθmin = 2.0º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −4→4
Tmin = 0.764, Tmax = 0.905k = −21→24
2623 measured reflectionsl = −8→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.109  w = 1/[σ2(Fo2) + (0.0536P)2 + 1.2237P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max = 0.001
1590 reflectionsΔρmax = 0.23 e Å3
153 parametersΔρmin = −0.49 e Å3
5 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
Cu10.50000.50000.50000.0283 (2)
O10.8063 (6)0.52464 (11)0.37661 (18)0.0352 (5)
O21.0084 (7)0.48225 (12)0.21648 (19)0.0399 (6)
O30.4985 (6)0.41370 (10)0.43287 (17)0.0313 (5)
O40.7190 (7)0.36328 (11)0.28166 (19)0.0386 (5)
O1w1.1418 (8)0.65099 (13)0.3772 (2)0.0477 (6)
N11.1417 (8)0.37249 (17)0.0727 (2)0.0439 (7)
N21.5342 (8)0.27528 (14)−0.1995 (2)0.0365 (6)
C10.8457 (8)0.47791 (15)0.3044 (2)0.0275 (6)
C20.6748 (8)0.41168 (14)0.3400 (2)0.0275 (6)
C31.1500 (8)0.3067 (2)0.0721 (3)0.0411 (8)
H31.06740.28370.13430.049*
C41.2757 (8)0.27283 (17)−0.0171 (3)0.0354 (7)
H41.27760.2270−0.01600.043*
C51.4040 (7)0.30699 (15)−0.1115 (2)0.0266 (6)
C61.3848 (8)0.37643 (16)−0.1090 (3)0.0344 (7)
H61.46090.4011−0.17020.041*
C71.2545 (9)0.40679 (17)−0.0167 (3)0.0428 (8)
H71.24290.4525−0.01510.051*
H111.045 (13)0.6140 (13)0.363 (4)0.084 (17)*
H121.268 (11)0.642 (3)0.434 (3)0.077 (17)*
H11.068 (10)0.3915 (18)0.132 (2)0.046 (11)*
H211.563 (10)0.2337 (6)−0.199 (3)0.042 (10)*
H221.621 (11)0.2979 (18)−0.253 (2)0.055 (12)*
U11U22U33U12U13U23
Cu10.0380 (3)0.0234 (3)0.0237 (3)−0.00362 (19)0.0082 (2)−0.00456 (18)
O10.0493 (13)0.0257 (11)0.0309 (11)−0.0074 (10)0.0139 (10)−0.0061 (9)
O20.0526 (14)0.0358 (12)0.0314 (12)−0.0023 (11)0.0165 (11)−0.0029 (10)
O30.0416 (12)0.0258 (11)0.0265 (11)−0.0047 (9)0.0058 (9)−0.0030 (8)
O40.0550 (14)0.0256 (11)0.0354 (12)−0.0043 (10)0.0117 (10)−0.0088 (9)
O1w0.0663 (17)0.0358 (14)0.0411 (14)−0.0106 (12)−0.0018 (13)0.0083 (11)
N10.0379 (15)0.064 (2)0.0295 (15)0.0085 (14)−0.0009 (12)−0.0171 (14)
N20.0476 (16)0.0320 (15)0.0300 (14)0.0043 (12)0.0065 (12)−0.0016 (12)
C10.0325 (15)0.0265 (15)0.0236 (15)0.0023 (12)0.0016 (12)−0.0007 (11)
C20.0310 (14)0.0277 (15)0.0240 (14)0.0019 (11)0.0004 (12)−0.0020 (12)
C30.0321 (16)0.065 (2)0.0265 (16)0.0059 (15)−0.0001 (13)0.0060 (16)
C40.0328 (15)0.0393 (17)0.0342 (16)0.0024 (13)−0.0023 (13)0.0077 (14)
C50.0248 (13)0.0307 (15)0.0244 (14)0.0030 (11)−0.0051 (11)−0.0015 (12)
C60.0353 (16)0.0330 (16)0.0348 (17)0.0010 (13)0.0012 (13)0.0021 (13)
C70.0436 (18)0.0353 (18)0.049 (2)0.0056 (14)−0.0018 (16)−0.0133 (16)
Cu1—O11.932 (2)N2—C51.325 (4)
Cu1—O31.927 (2)N2—H210.85 (1)
Cu1—O3i1.927 (2)N2—H220.85 (3)
Cu1—O1i1.932 (2)C1—C21.548 (4)
O1—C11.290 (4)C3—C41.352 (5)
O2—C11.217 (4)C3—H30.9300
O3—C21.291 (4)C4—C51.409 (4)
O4—C21.216 (4)C4—H40.9300
O1w—H110.85 (3)C5—C61.413 (4)
O1w—H120.85 (3)C6—C71.355 (5)
N1—C31.337 (5)C6—H60.9300
N1—C71.343 (5)C7—H70.9300
N1—H10.85 (3)
O3—Cu1—O3i180O4—C2—O3126.0 (3)
O3—Cu1—O1i94.7 (1)O4—C2—C1119.2 (3)
O3i—Cu1—O1i85.4 (1)O3—C2—C1114.8 (2)
O1—Cu1—O385.4 (1)N1—C3—C4121.4 (3)
O3i—Cu1—O194.7 (1)N1—C3—H3119.3
O1i—Cu1—O1180C4—C3—H3119.3
C1—O1—Cu1112.83 (19)C3—C4—C5119.9 (3)
C2—O3—Cu1112.66 (18)C3—C4—H4120.0
H11—O1w—H12101 (5)C5—C4—H4120.0
C3—N1—C7120.4 (3)N2—C5—C4121.4 (3)
C3—N1—H1118 (3)N2—C5—C6121.4 (3)
C7—N1—H1122 (3)C4—C5—C6117.2 (3)
C5—N2—H21122 (3)C7—C6—C5119.3 (3)
C5—N2—H22118 (3)C7—C6—H6120.3
H21—N2—H22120 (4)C5—C6—H6120.3
O2—C1—O1125.5 (3)N1—C7—C6121.7 (3)
O2—C1—C2120.4 (3)N1—C7—H7119.2
O1—C1—C2114.0 (2)C6—C7—H7119.2
O3—Cu1—O1—C15.3 (2)O2—C1—C2—O3−177.7 (3)
O3i—Cu1—O1—C1−174.7 (2)O1—C1—C2—O34.2 (4)
O1i—Cu1—O3—C2177.2 (2)C7—N1—C3—C41.0 (5)
O1—Cu1—O3—C2−2.8 (2)N1—C3—C4—C50.5 (5)
Cu1—O1—C1—O2175.7 (3)C3—C4—C5—N2178.9 (3)
Cu1—O1—C1—C2−6.3 (3)C3—C4—C5—C6−1.7 (4)
Cu1—O3—C2—O4179.1 (3)N2—C5—C6—C7−179.1 (3)
Cu1—O3—C2—C10.2 (3)C4—C5—C6—C71.6 (4)
O2—C1—C2—O43.3 (4)C3—N1—C7—C6−1.1 (5)
O1—C1—C2—O4−174.8 (3)C5—C6—C7—N1−0.2 (5)
D—H···AD—HH···AD···AD—H···A
O1w—H11···O10.85 (3)2.03 (2)2.852 (3)164 (5)
O1w—H12···O3ii0.85 (3)2.12 (5)2.931 (3)160 (5)
N1—H1···O20.85 (3)2.12 (2)2.858 (4)146 (4)
N2—H21···O4iii0.85 (1)2.07 (1)2.906 (4)168 (4)
N2—H22···O1wiv0.85 (3)2.02 (3)2.867 (4)176 (4)
Cu1—O11.932 (2)
Cu1—O31.927 (2)
O1—Cu1—O385.4 (1)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1w—H11⋯O10.85 (3)2.03 (2)2.852 (3)164 (5)
O1w—H12⋯O3i0.85 (3)2.12 (5)2.931 (3)160 (5)
N1—H1⋯O20.85 (3)2.12 (2)2.858 (4)146 (4)
N2—H21⋯O4ii0.85 (1)2.07 (1)2.906 (4)168 (4)
N2—H22⋯O1wiii0.85 (3)2.02 (3)2.867 (4)176 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  4-Amino-pyridinium trans-diaqua-dioxalatochromate(III) monohydrate.

Authors:  Ichraf Chérif; Jawher Abdelhak; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-02

2.  2-Amino-6-methyl-pyridinium trans-di-aqua-dioxalatochromate(III) monohydrate.

Authors:  Rihab Dridi; Saoussen Namouchi Cherni; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-10
  2 in total

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