Literature DB >> 24098190

Pyridinium trans-di-aqua-bis-[oxalato(2-)-κ(2) O (1),O (2)]chromate(III) urea monosolvate.

Gouet Bebga1, Martin Signé, Justin Nenwa, Mohammed Mbarki, Boniface P T Fokwa.   

Abstract

The asymmetric unit of the title solvated mol-ecular salt, (C5H6N)[Cr(C2O4)2(H2O)2CO(NH2)2, contains half a formula unit. Each component is completed by crystallographic twofold symmetry: in the cation, one C and the N atom lie on the rotation axis; in the anion, the Cr(III) ion lies on the axis; in the solvent mol-ecule, the C and the O atom lie on the axis. The aqua ligands are in a trans disposition in the resulting CrO6 octa-hedron. In the crystal, the components are linked by O-H⋯O, N-H⋯O and N-H⋯(O,O) hydrogen bonds, generating a three-dimensional network.

Entities:  

Year:  2013        PMID: 24098190      PMCID: PMC3790368          DOI: 10.1107/S1600536813026135

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For mol­ecular salts containing the [Cr(C2O4)2(H2O)2]− anion, see: Bélombé et al. (2009 ▶); Nenwa et al. (2010 ▶, 2012 ▶); Chérif et al. (2011 ▶); Chérif, Zid et al. (2012 ▶); Chérif, Abdelhak et al. (2012 ▶); Dridi et al. (2013 ▶).

Experimental

Crystal data

(C5H6N)[Cr(C2O4)2(H2O)2]·CH4N2O M = 404.24 Monoclinic, a = 7.6456 (7) Å b = 21.4096 (18) Å c = 9.7404 (12) Å β = 100.278 (1)° V = 1568.8 (3) Å3 Z = 4 Mo Kα radiation μ = 0.80 mm−1 T = 293 K 0.20 × 0.16 × 0.13 mm

Data collection

Bruker APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.851, T max = 0.935 11770 measured reflections 2343 independent reflections 1980 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.111 S = 1.10 2343 reflections 132 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.56 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813026135/hb7141sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813026135/hb7141Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C5H6N)[Cr(C2O4)2(H2O)2]·CH4N2OZ = 4
Mr = 404.24F(000) = 828
Monoclinic, I2/aDx = 1.712 Mg m3
Hall symbol: -I 2yaMo Kα radiation, λ = 0.71073 Å
a = 7.6456 (7) ŵ = 0.80 mm1
b = 21.4096 (18) ÅT = 293 K
c = 9.7404 (12) ÅPrism, violet
β = 100.278 (1)°0.20 × 0.16 × 0.13 mm
V = 1568.8 (3) Å3
Bruker APEX CCD diffractometer2343 independent reflections
Radiation source: fine-focus sealed tube1980 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
ω scansθmax = 30.9°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −10→10
Tmin = 0.851, Tmax = 0.935k = −30→30
11770 measured reflectionsl = −13→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.0515P)2 + 1.3542P] where P = (Fo2 + 2Fc2)/3
2343 reflections(Δ/σ)max < 0.001
132 parametersΔρmax = 0.30 e Å3
5 restraintsΔρmin = −0.56 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cr40.25000.223340 (17)0.00000.02410 (13)
O10.45417 (19)0.22672 (6)−0.10198 (14)0.0315 (3)
O20.35892 (18)0.15558 (6)0.11799 (13)0.0324 (3)
O30.14209 (17)0.29281 (6)−0.11952 (12)0.0288 (3)
O40.1309 (2)0.39675 (7)−0.12681 (15)0.0436 (4)
O50.3604 (2)0.05182 (7)0.13176 (16)0.0498 (4)
C10.1842 (2)0.34777 (8)−0.07105 (17)0.0285 (3)
C20.3134 (3)0.10049 (8)0.07197 (18)0.0319 (4)
N10.75000.48039 (15)0.00000.0622 (8)
H10.75000.52060.00000.075*
C30.8444 (3)0.38759 (15)0.1108 (3)0.0576 (7)
H30.90990.36680.18680.069*
C40.75000.35421 (17)0.00000.0527 (8)
H40.75000.31080.00000.063*
C50.8402 (4)0.45021 (15)0.1071 (3)0.0594 (7)
H50.90230.47270.18190.071*
O60.75000.17120 (9)0.00000.0388 (4)
N20.6418 (3)0.08022 (9)−0.0971 (2)0.0447 (4)
C60.75000.11234 (13)0.00000.0326 (5)
H2A0.584 (3)0.0960 (12)−0.168 (2)0.055 (8)*
H2B0.649 (4)0.0435 (8)−0.092 (3)0.061 (9)*
H1B0.434 (3)0.2215 (11)−0.1855 (17)0.049 (8)*
H1A0.544 (3)0.2077 (11)−0.071 (2)0.053 (8)*
U11U22U33U12U13U23
Cr40.0280 (2)0.0240 (2)0.01765 (18)0.000−0.00312 (13)0.000
O10.0307 (7)0.0389 (7)0.0229 (6)0.0050 (5)−0.0004 (5)−0.0009 (5)
O20.0385 (7)0.0280 (6)0.0259 (6)0.0010 (5)−0.0071 (5)0.0020 (5)
O30.0334 (6)0.0290 (6)0.0213 (5)0.0013 (5)−0.0020 (5)0.0010 (4)
O40.0565 (9)0.0310 (7)0.0391 (8)0.0071 (6)−0.0026 (7)0.0067 (6)
O50.0713 (11)0.0278 (7)0.0433 (8)0.0053 (7)−0.0084 (8)0.0046 (6)
C10.0313 (9)0.0293 (8)0.0245 (8)0.0015 (6)0.0043 (6)0.0013 (6)
C20.0358 (9)0.0303 (8)0.0272 (8)0.0024 (7)−0.0014 (7)0.0024 (6)
N10.069 (2)0.0486 (17)0.071 (2)0.0000.0156 (17)0.000
C30.0445 (13)0.0814 (19)0.0409 (12)0.0074 (12)−0.0084 (10)0.0166 (12)
C40.0477 (19)0.0471 (18)0.062 (2)0.0000.0057 (16)0.000
C50.0567 (15)0.0726 (18)0.0456 (13)−0.0166 (13)0.0001 (11)−0.0139 (12)
O60.0303 (9)0.0295 (9)0.0514 (12)0.000−0.0067 (8)0.000
N20.0520 (11)0.0336 (9)0.0434 (10)−0.0022 (8)−0.0052 (8)−0.0043 (8)
C60.0291 (12)0.0338 (12)0.0346 (12)0.0000.0052 (10)0.000
Cr4—O2i1.9436 (12)N1—C5ii1.313 (3)
Cr4—O21.9436 (12)N1—C51.313 (3)
Cr4—O3i1.9762 (12)N1—H10.8600
Cr4—O31.9762 (12)C3—C51.341 (4)
Cr4—O11.9955 (14)C3—C41.385 (3)
Cr4—O1i1.9955 (14)C3—H30.9300
O1—H1B0.808 (16)C4—C3ii1.385 (3)
O1—H1A0.808 (16)C4—H40.9300
O2—C21.287 (2)C5—H50.9300
O3—C11.287 (2)O6—C61.260 (3)
O4—C11.217 (2)N2—C61.331 (2)
O5—C21.216 (2)N2—H2A0.821 (17)
C1—C1i1.559 (3)N2—H2B0.788 (17)
C2—C2i1.556 (3)C6—N2ii1.331 (2)
O2i—Cr4—O283.43 (7)O3—C1—C1i113.91 (9)
O2i—Cr4—O3i179.29 (5)O5—C2—O2125.43 (17)
O2—Cr4—O3i97.10 (5)O5—C2—C2i120.99 (11)
O2i—Cr4—O397.10 (5)O2—C2—C2i113.59 (9)
O2—Cr4—O3179.29 (5)C5ii—N1—C5121.0 (4)
O3i—Cr4—O382.36 (7)C5ii—N1—H1119.5
O2i—Cr4—O191.34 (6)C5—N1—H1119.5
O2—Cr4—O191.76 (6)C5—C3—C4119.2 (2)
O3i—Cr4—O189.11 (5)C5—C3—H3120.4
O3—Cr4—O187.76 (5)C4—C3—H3120.4
O2i—Cr4—O1i91.76 (6)C3—C4—C3ii117.9 (4)
O2—Cr4—O1i91.34 (6)C3—C4—H4121.1
O3i—Cr4—O1i87.76 (5)C3ii—C4—H4121.1
O3—Cr4—O1i89.11 (5)N1—C5—C3121.3 (3)
O1—Cr4—O1i175.84 (8)N1—C5—H5119.3
Cr4—O1—H1B117.8 (19)C3—C5—H5119.3
Cr4—O1—H1A119.1 (19)C6—N2—H2A124 (2)
H1B—O1—H1A108 (2)C6—N2—H2B116 (2)
C2—O2—Cr4114.66 (11)H2A—N2—H2B119 (3)
C1—O3—Cr4114.90 (10)O6—C6—N2121.10 (13)
O4—C1—O3125.58 (16)O6—C6—N2ii121.10 (13)
O4—C1—C1i120.51 (11)N2—C6—N2ii117.8 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O4iii0.862.262.979 (3)142
N1—H1···O4iv0.862.262.979 (3)142
N2—H2A···O4v0.82 (2)2.36 (2)3.134 (2)158 (3)
N2—H2B···O5vi0.79 (2)2.08 (2)2.847 (2)166 (3)
O1—H1B···O3v0.81 (2)1.91 (2)2.7135 (18)174 (3)
O1—H1A···O60.81 (2)1.79 (2)2.5910 (16)176 (3)
Table 1

Selected bond lengths (Å)

Cr4—O21.9436 (12)
Cr4—O31.9762 (12)
Cr4—O11.9955 (14)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O4i 0.862.262.979 (3)142
N1—H1⋯O4ii 0.862.262.979 (3)142
N2—H2A⋯O4iii 0.82 (2)2.36 (2)3.134 (2)158 (3)
N2—H2B⋯O5iv 0.79 (2)2.08 (2)2.847 (2)166 (3)
O1—H1B⋯O3iii 0.81 (2)1.91 (2)2.7135 (18)174 (3)
O1—H1A⋯O60.81 (2)1.79 (2)2.5910 (16)176 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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