Literature DB >> 21588399

4-Amino-pyridinium 4-carb-oxy-butano-ate.

Hoong-Kun Fun, Madhukar Hemamalini, Venkatachalam Rajakannan.   

Abstract

The asymmetric unit of the title salt, C(5)H(7)N(2) (+)·C(5)H(7)O(4) (-), contains two 4-amino-pyridinium cations and two 4-carb-oxy-butano-ate anions. Each 4-amino-pyridinium cation is planar, with a maximum deviation of 0.005 (2) Å. Both 4-carb-oxy-butano-ate anions adopt an extended conformation. In the crystal structure, the cations and anions are linked via N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds, forming a two-dimensional network parallel to the bc plane.

Entities:  

Year:  2010        PMID: 21588399      PMCID: PMC3007404          DOI: 10.1107/S1600536810028734

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 4-amino­pyridine, see: Schwid et al. (1997 ▶). For crystal structure determinations of 4-amino­pyridine, see: Chao & Schempp (1977 ▶); Anderson et al. (2005 ▶). For conformations of 4-carb­oxy­butano­ate (hydrogen glutarate) anions, see: Saraswathi et al. (2001 ▶).

Experimental

Crystal data

C5H7N2 +·C5H7O4 M = 226.23 Monoclinic, a = 9.6159 (2) Å b = 10.3065 (2) Å c = 22.6801 (5) Å β = 102.143 (1)° V = 2197.45 (8) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.35 × 0.26 × 0.21 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.963, T max = 0.978 7931 measured reflections 7931 independent reflections 5556 reflections with I > 2σ(I)

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.154 S = 1.04 7931 reflections 290 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810028734/wn2401sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810028734/wn2401Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H7N2+·C5H7O4F(000) = 960
Mr = 226.23Dx = 1.368 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8906 reflections
a = 9.6159 (2) Åθ = 2.5–30.1°
b = 10.3065 (2) ŵ = 0.11 mm1
c = 22.6801 (5) ÅT = 296 K
β = 102.143 (1)°Block, colourless
V = 2197.45 (8) Å30.35 × 0.26 × 0.21 mm
Z = 8
Bruker SMART APEXII CCD area-detector diffractometer7931 independent reflections
Radiation source: fine-focus sealed tube5556 reflections with I > 2σ(I)
graphiteRint = 0.0000
φ and ω scansθmax = 32.6°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −14→14
Tmin = 0.963, Tmax = 0.978k = −15→15
7931 measured reflectionsl = −11→34
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0758P)2 + 0.2205P] where P = (Fo2 + 2Fc2)/3
7931 reflections(Δ/σ)max < 0.001
290 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1A0.28193 (16)1.02435 (13)0.06872 (6)0.0516 (3)
H1O10.25301.01610.02890.077*
O2A0.41099 (16)0.95000 (13)0.15319 (5)0.0478 (3)
O3A0.76925 (16)0.49292 (13)0.05256 (5)0.0528 (4)
O4A0.74003 (16)0.55719 (12)0.14167 (5)0.0454 (3)
C1A0.3787 (2)0.94695 (15)0.09826 (7)0.0352 (3)
C2A0.4485 (2)0.85513 (16)0.06135 (7)0.0370 (3)
H2AA0.50280.90590.03810.044*
H2AB0.37450.81030.03300.044*
C3A0.5465 (2)0.75453 (16)0.09724 (7)0.0352 (3)
H3AA0.62640.79760.12300.042*
H3AB0.49550.70640.12270.042*
C4A0.60070 (19)0.66165 (16)0.05536 (7)0.0366 (3)
H4AA0.52020.61440.03220.044*
H4AB0.64150.71210.02710.044*
C5A0.7105 (2)0.56458 (15)0.08576 (7)0.0346 (3)
N1A0.28175 (17)0.87243 (15)0.83697 (7)0.0449 (4)
H1AA0.22640.92790.84860.054*
N2A0.53978 (18)0.60387 (16)0.78136 (7)0.0499 (4)
H2AC0.53410.59180.74340.060*
H2AD0.59870.55900.80720.060*
C6A0.3744 (2)0.80430 (19)0.87789 (8)0.0488 (4)
H6AA0.37780.81910.91860.059*
C7A0.4634 (2)0.71465 (18)0.86214 (8)0.0461 (4)
H7AA0.52680.66920.89150.055*
C8A0.45783 (19)0.69135 (17)0.79991 (8)0.0379 (3)
C9A0.3609 (2)0.76547 (17)0.75810 (7)0.0399 (4)
H9AA0.35480.75430.71690.048*
C10A0.2754 (2)0.85416 (19)0.77826 (8)0.0434 (4)
H10A0.21150.90270.75040.052*
O1B1.22169 (16)−0.01002 (13)0.95900 (5)0.0527 (4)
O2B1.10552 (17)0.05354 (13)0.86994 (5)0.0494 (3)
O3B0.72084 (16)0.52422 (13)0.94174 (6)0.0532 (4)
H1O30.73470.51450.98280.080*
O4B0.76125 (17)0.44368 (13)0.85744 (5)0.0524 (3)
C1B1.12988 (19)0.06276 (15)0.92524 (7)0.0359 (3)
C2B1.05243 (19)0.16092 (15)0.95600 (7)0.0357 (3)
H2BA1.12230.21270.98310.043*
H2BB0.99660.11480.98030.043*
C3B0.9547 (2)0.25132 (15)0.91350 (7)0.0342 (3)
H3BA0.87920.20160.88840.041*
H3BB1.00790.29480.88740.041*
C4B0.89090 (19)0.35155 (16)0.94935 (7)0.0361 (3)
H4BA0.84410.30630.97730.043*
H4BB0.96770.40230.97310.043*
C5B0.7856 (2)0.44294 (16)0.91214 (7)0.0358 (3)
N1B−0.04752 (17)0.37734 (15)0.17394 (7)0.0453 (4)
H1BA−0.11370.43330.16190.054*
N2B0.26087 (18)0.10594 (16)0.23042 (7)0.0494 (4)
H2BC0.29140.09280.26840.059*
H2BD0.29460.06130.20460.059*
C6B0.0019 (2)0.35827 (19)0.23332 (8)0.0440 (4)
H6BA−0.03480.40670.26110.053*
C7B0.1058 (2)0.26829 (17)0.25317 (7)0.0402 (4)
H7BA0.13920.25600.29430.048*
C8B0.16224 (19)0.19448 (17)0.21178 (7)0.0377 (3)
C9B0.1092 (2)0.21875 (18)0.14972 (8)0.0463 (4)
H9BA0.14440.17340.12060.056*
C10B0.0059 (2)0.30944 (19)0.13355 (8)0.0494 (5)
H10B−0.02910.32500.09270.059*
U11U22U33U12U13U23
O1A0.0584 (8)0.0587 (8)0.0349 (6)0.0303 (7)0.0034 (6)−0.0017 (6)
O2A0.0626 (9)0.0535 (7)0.0270 (5)0.0165 (7)0.0085 (6)−0.0009 (5)
O3A0.0656 (9)0.0597 (8)0.0334 (6)0.0320 (7)0.0109 (6)−0.0008 (6)
O4A0.0568 (8)0.0485 (7)0.0289 (6)0.0187 (6)0.0043 (6)−0.0008 (5)
C1A0.0396 (9)0.0387 (8)0.0277 (7)0.0068 (7)0.0083 (6)0.0003 (6)
C2A0.0420 (9)0.0428 (8)0.0262 (7)0.0128 (8)0.0073 (6)0.0014 (6)
C3A0.0401 (8)0.0367 (7)0.0288 (7)0.0081 (6)0.0068 (7)−0.0011 (6)
C4A0.0397 (8)0.0421 (8)0.0274 (7)0.0105 (8)0.0056 (6)−0.0012 (6)
C5A0.0383 (8)0.0351 (7)0.0298 (7)0.0065 (7)0.0056 (6)−0.0012 (6)
N1A0.0506 (9)0.0441 (8)0.0422 (8)0.0090 (7)0.0148 (7)−0.0026 (6)
N2A0.0533 (10)0.0551 (9)0.0386 (8)0.0173 (8)0.0036 (7)−0.0042 (7)
C6A0.0620 (12)0.0484 (10)0.0347 (8)0.0055 (10)0.0071 (8)−0.0039 (7)
C7A0.0564 (12)0.0457 (9)0.0334 (8)0.0097 (9)0.0029 (8)−0.0012 (7)
C8A0.0392 (8)0.0369 (8)0.0362 (8)0.0018 (7)0.0048 (7)−0.0005 (6)
C9A0.0458 (10)0.0465 (9)0.0261 (7)0.0040 (7)0.0044 (7)0.0019 (6)
C10A0.0456 (10)0.0477 (9)0.0375 (8)0.0034 (8)0.0102 (7)0.0027 (7)
O1B0.0608 (8)0.0608 (8)0.0340 (6)0.0342 (7)0.0042 (6)0.0021 (6)
O2B0.0653 (9)0.0533 (7)0.0293 (6)0.0242 (7)0.0094 (6)0.0018 (5)
O3B0.0653 (9)0.0577 (8)0.0353 (6)0.0334 (7)0.0073 (6)0.0009 (6)
O4B0.0659 (9)0.0579 (8)0.0288 (6)0.0227 (7)−0.0008 (6)−0.0005 (5)
C1B0.0407 (9)0.0373 (8)0.0301 (7)0.0084 (7)0.0087 (7)0.0018 (6)
C2B0.0406 (9)0.0380 (8)0.0281 (7)0.0122 (7)0.0063 (6)0.0011 (6)
C3B0.0401 (8)0.0344 (7)0.0273 (7)0.0066 (6)0.0054 (7)−0.0005 (6)
C4B0.0398 (8)0.0389 (7)0.0279 (7)0.0095 (7)0.0032 (6)−0.0035 (6)
C5B0.0387 (9)0.0343 (7)0.0321 (7)0.0076 (7)0.0019 (6)−0.0010 (6)
N1B0.0458 (9)0.0450 (8)0.0424 (8)0.0103 (7)0.0030 (7)0.0035 (6)
N2B0.0553 (10)0.0565 (9)0.0368 (8)0.0171 (8)0.0105 (7)0.0065 (7)
C6B0.0468 (10)0.0480 (9)0.0368 (9)0.0012 (9)0.0078 (7)−0.0046 (7)
C7B0.0461 (10)0.0455 (9)0.0278 (7)0.0047 (8)0.0048 (7)−0.0013 (6)
C8B0.0406 (9)0.0390 (8)0.0342 (8)0.0033 (7)0.0095 (7)0.0019 (6)
C9B0.0577 (12)0.0480 (9)0.0330 (8)0.0116 (9)0.0093 (8)−0.0003 (7)
C10B0.0588 (12)0.0554 (10)0.0325 (9)0.0105 (10)0.0062 (8)0.0045 (8)
O1A—C1A1.299 (2)O1B—C1B1.2823 (19)
O1A—H1O10.8903O2B—C1B1.2303 (19)
O2A—C1A1.2194 (18)O3B—C5B1.310 (2)
O3A—C5A1.269 (2)O3B—H1O30.9176
O4A—C5A1.2423 (18)O4B—C5B1.2133 (19)
C1A—C2A1.511 (2)C1B—C2B1.511 (2)
C2A—C3A1.518 (2)C2B—C3B1.516 (2)
C2A—H2AA0.9700C2B—H2BA0.9700
C2A—H2AB0.9700C2B—H2BB0.9700
C3A—C4A1.516 (2)C3B—C4B1.521 (2)
C3A—H3AA0.9700C3B—H3BA0.9700
C3A—H3AB0.9700C3B—H3BB0.9700
C4A—C5A1.511 (2)C4B—C5B1.505 (2)
C4A—H4AA0.9700C4B—H4BA0.9700
C4A—H4AB0.9700C4B—H4BB0.9700
N1A—C10A1.333 (2)N1B—C10B1.338 (2)
N1A—C6A1.342 (2)N1B—C6B1.345 (2)
N1A—H1AA0.8600N1B—H1BA0.8600
N2A—C8A1.323 (2)N2B—C8B1.320 (2)
N2A—H2AC0.8600N2B—H2BC0.8600
N2A—H2AD0.8600N2B—H2BD0.8600
C6A—C7A1.357 (3)C6B—C7B1.368 (3)
C6A—H6AA0.9300C6B—H6BA0.9300
C7A—C8A1.422 (2)C7B—C8B1.403 (2)
C7A—H7AA0.9300C7B—H7BA0.9300
C8A—C9A1.407 (2)C8B—C9B1.415 (2)
C9A—C10A1.370 (3)C9B—C10B1.357 (3)
C9A—H9AA0.9300C9B—H9BA0.9300
C10A—H10A0.9300C10B—H10B0.9300
C1A—O1A—H1O1120.0C5B—O3B—H1O3117.8
O2A—C1A—O1A120.78 (15)O2B—C1B—O1B121.54 (15)
O2A—C1A—C2A122.33 (15)O2B—C1B—C2B121.05 (14)
O1A—C1A—C2A116.89 (13)O1B—C1B—C2B117.40 (13)
C1A—C2A—C3A115.41 (12)C1B—C2B—C3B114.68 (13)
C1A—C2A—H2AA108.4C1B—C2B—H2BA108.6
C3A—C2A—H2AA108.4C3B—C2B—H2BA108.6
C1A—C2A—H2AB108.4C1B—C2B—H2BB108.6
C3A—C2A—H2AB108.4C3B—C2B—H2BB108.6
H2AA—C2A—H2AB107.5H2BA—C2B—H2BB107.6
C4A—C3A—C2A110.61 (12)C2B—C3B—C4B110.07 (12)
C4A—C3A—H3AA109.5C2B—C3B—H3BA109.6
C2A—C3A—H3AA109.5C4B—C3B—H3BA109.6
C4A—C3A—H3AB109.5C2B—C3B—H3BB109.6
C2A—C3A—H3AB109.5C4B—C3B—H3BB109.6
H3AA—C3A—H3AB108.1H3BA—C3B—H3BB108.2
C5A—C4A—C3A115.55 (13)C5B—C4B—C3B115.13 (13)
C5A—C4A—H4AA108.4C5B—C4B—H4BA108.5
C3A—C4A—H4AA108.4C3B—C4B—H4BA108.5
C5A—C4A—H4AB108.4C5B—C4B—H4BB108.5
C3A—C4A—H4AB108.4C3B—C4B—H4BB108.5
H4AA—C4A—H4AB107.5H4BA—C4B—H4BB107.5
O4A—C5A—O3A122.35 (15)O4B—C5B—O3B120.63 (15)
O4A—C5A—C4A119.61 (14)O4B—C5B—C4B122.68 (15)
O3A—C5A—C4A118.04 (13)O3B—C5B—C4B116.69 (13)
C10A—N1A—C6A120.06 (16)C10B—N1B—C6B120.21 (16)
C10A—N1A—H1AA120.0C10B—N1B—H1BA119.9
C6A—N1A—H1AA120.0C6B—N1B—H1BA119.9
C8A—N2A—H2AC120.0C8B—N2B—H2BC120.0
C8A—N2A—H2AD120.0C8B—N2B—H2BD120.0
H2AC—N2A—H2AD120.0H2BC—N2B—H2BD120.0
N1A—C6A—C7A122.55 (17)N1B—C6B—C7B120.57 (17)
N1A—C6A—H6AA118.7N1B—C6B—H6BA119.7
C7A—C6A—H6AA118.7C7B—C6B—H6BA119.7
C6A—C7A—C8A118.83 (17)C6B—C7B—C8B120.38 (16)
C6A—C7A—H7AA120.6C6B—C7B—H7BA119.8
C8A—C7A—H7AA120.6C8B—C7B—H7BA119.8
N2A—C8A—C9A120.67 (16)N2B—C8B—C7B120.90 (15)
N2A—C8A—C7A122.04 (16)N2B—C8B—C9B121.69 (16)
C9A—C8A—C7A117.29 (16)C7B—C8B—C9B117.41 (16)
C10A—C9A—C8A119.73 (16)C10B—C9B—C8B118.75 (17)
C10A—C9A—H9AA120.1C10B—C9B—H9BA120.6
C8A—C9A—H9AA120.1C8B—C9B—H9BA120.6
N1A—C10A—C9A121.52 (17)N1B—C10B—C9B122.66 (17)
N1A—C10A—H10A119.2N1B—C10B—H10B118.7
C9A—C10A—H10A119.2C9B—C10B—H10B118.7
O2A—C1A—C2A—C3A8.1 (3)O2B—C1B—C2B—C3B−4.8 (3)
O1A—C1A—C2A—C3A−172.34 (16)O1B—C1B—C2B—C3B175.08 (17)
C1A—C2A—C3A—C4A175.44 (15)C1B—C2B—C3B—C4B−175.99 (14)
C2A—C3A—C4A—C5A174.42 (15)C2B—C3B—C4B—C5B−176.94 (15)
C3A—C4A—C5A—O4A6.7 (3)C3B—C4B—C5B—O4B−5.5 (3)
C3A—C4A—C5A—O3A−173.38 (17)C3B—C4B—C5B—O3B175.12 (16)
C10A—N1A—C6A—C7A−0.6 (3)C10B—N1B—C6B—C7B−0.9 (3)
N1A—C6A—C7A—C8A−0.3 (3)N1B—C6B—C7B—C8B0.0 (3)
C6A—C7A—C8A—N2A−178.87 (18)C6B—C7B—C8B—N2B−178.91 (18)
C6A—C7A—C8A—C9A1.1 (3)C6B—C7B—C8B—C9B1.0 (3)
N2A—C8A—C9A—C10A178.99 (18)N2B—C8B—C9B—C10B178.79 (18)
C7A—C8A—C9A—C10A−1.0 (3)C7B—C8B—C9B—C10B−1.1 (3)
C6A—N1A—C10A—C9A0.8 (3)C6B—N1B—C10B—C9B0.8 (3)
C8A—C9A—C10A—N1A0.1 (3)C8B—C9B—C10B—N1B0.3 (3)
D—H···AD—HH···AD···AD—H···A
O1A—H1O1···O1Bi0.891.572.4591 (17)172
N1A—H1AA···O1Bii0.862.593.183 (2)127
N1A—H1AA···O2Bii0.861.872.729 (2)177
N2A—H2AC···O2Aiii0.862.182.9627 (19)151
N2A—H2AD···O4B0.862.102.948 (2)170
O3B—H1O3···O3Aiv0.921.562.4791 (17)176
C10A—H10A···O4Bv0.932.553.161 (2)124
C7A—H7AA···O3B0.932.473.370 (2)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1A—H1O1⋯O1Bi0.891.572.4591 (17)172
N1A—H1AA⋯O1Bii0.862.593.183 (2)127
N1A—H1AA⋯O2Bii0.861.872.729 (2)177
N2A—H2AC⋯O2Aiii0.862.182.9627 (19)151
N2A—H2AD⋯O4B0.862.102.948 (2)170
O3B—H1O3⋯O3Aiv0.921.562.4791 (17)176
C10A—H10A⋯O4Bv0.932.553.161 (2)124
C7A—H7AA⋯O3B0.932.473.370 (2)162

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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Journal:  Neurology       Date:  1997-04       Impact factor: 9.910

3.  X-ray studies on crystalline complexes involving amino acids and peptides. XXXVII. Novel aggregation patterns and effect of chirality in the complexes of DL- and L-lysine with glutaric acid.

Authors:  N T Saraswathi; N Manoj; M Vijayan
Journal:  Acta Crystallogr B       Date:  2001-06-01

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  2 in total

1.  4-Amino-pyridinium trans-diaqua-dioxalatochromate(III) monohydrate.

Authors:  Ichraf Chérif; Jawher Abdelhak; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-02

2.  2-Amino-6-methyl-pyridinium trans-di-aqua-dioxalatochromate(III) monohydrate.

Authors:  Rihab Dridi; Saoussen Namouchi Cherni; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-10
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