| Literature DB >> 30366391 |
Daniel Sethio1, Vytor Oliveira2, Elfi Kraka3.
Abstract
A set of 35 representative neutral and charEntities:
Keywords: CCSD(T); intrinsic bond strength; local stretching force constant; noncovalent interactions; tetrel bonding; weak interactions
Mesh:
Year: 2018 PMID: 30366391 PMCID: PMC6278569 DOI: 10.3390/molecules23112763
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Schematic representation of tetrel complexes between the electron-deficient tetrel atom of a Lewis acid (tetrel donor, T-donor, T = C, Si, Ge) and the electron-rich tetrel atom of a Lewis base (tetrel acceptor, T-acceptor, A = FH, OH2, NH3, Cl−).
Figure 2Schematic representation of complexes 1-35 with atomic charges (in me) from the natural population analysis calculated at the CCSD(T)/aug-cc-pVTZ level of theory. Colors are used to correlate charges to specific atoms.
Figure 3Molecular electrostatic potential of neutral tetrel-donors mapped onto the 0.001 a.u electron density surface. Blue and red correspond, respectively, to the positive and negative potential. The extreme values are ±1.9 eV. The at the tetrel or -hole are given in bold blue, while the at the H (36, 37, 38) and at the chalcogen atoms (55, 57) are shown in black. Calculated at the CCSD(T)/aug-cc-pVTZ level of theory.
Summary of energetics, electron density, energy density, geometric, bond strength order, and vibrational spectroscopy data for complexes 1–35 *.
| # | Complex (symm.) |
|
| r | r | CT |
|
|
| n |
| n | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TA | XT | TA | TA | TA | TA | XT | XT | ||||||
|
| |||||||||||||
|
| FCH3···FH (C3v) | −1.50 | −1.29 | 0.01 | 2.972 | 1.392 | 2 | 0.034 | 0.012 | 0.045 | 0.073 | 5.018 | 1.038 |
|
| FCH3···OH2 (Cs) | −2.10 | −1.87 | 0.02 | 3.035 | 1.394 | 3 | 0.041 | 0.012 | 0.055 | 0.081 | 4.956 | 1.030 |
|
| FCH3···NH3 (C3v) | −2.25 | −2.05 | 0.02 | 3.218 | 1.395 | 5 | 0.040 | 0.009 | 0.049 | 0.076 | 4.912 | 1.025 |
|
| ClCH3···NH3 (C3v) | −2.08 | −1.88 | 0.02 | 3.289 | 1.798 | 6 | 0.037 | 0.008 | 0.043 | 0.071 | 2.943 | 0.768 |
|
| BrCH3···NH3 (C3v) | −2.00 | −1.80 | 0.02 | 3.304 | 1.953 | 6 | 0.037 | 0.008 | 0.041 | 0.069 | 2.515 | 0.703 |
|
| (HO)CH3···NH3 (Cs) | −1.38 | −1.21 | 0.01 | 3.362 | 1.429 | 3 | 0.031 | 0.008 | 0.032 | 0.060 | 4.652 | 0.994 |
|
| CF4···NH3 (C3v) | −1.62 | −1.24 | 0.06 | 3.426 | 1.328 | 1 | 0.030 | 0.007 | 0.044 | 0.072 | 5.926 | 1.140 |
|
| |||||||||||||
|
| FSiH3···FH (Cs) | −2.28 | −1.85 | 0.06 | 2.964 | 1.617 | 9 | 0.055 | 0.005 | 0.062 | 0.087 | 4.970 | 1.032 |
|
| FSiH3···OH2 (Cs) | −4.20 | −3.61 | 0.35 | 2.774 | 1.623 | 25 | 0.092 | 0.002 | 0.088 | 0.106 | 4.762 | 1.007 |
|
| FSiH3···NH3 (C3v) | −6.80 | −5.94 | 2.11 | 2.523 | 1.637 | 81 | 0.179 | −0.033 | 0.103 | 0.116 | 4.209 | 0.940 |
|
| ClSiH3···NH3 (C3v) | −6.13 | −5.41 | 2.02 | 2.580 | 2.117 | 84 | 0.165 | −0.024 | 0.073 | 0.095 | 1.941 | 0.607 |
|
| BrSiH3···NH3 (C3v) | −6.11 | −5.35 | 2.23 | 2.566 | 2.290 | 90 | 0.170 | −0.027 | 0.066 | 0.090 | 1.505 | 0.526 |
|
| (HO)SiH3···NH3 (Cs) | −4.13 | −3.61 | 0.68 | 2.825 | 1.680 | 42 | 0.108 | −0.003 | 0.070 | 0.093 | 4.065 | 0.921 |
|
| SiH4···NH3 (C3v) | −2.27 | −1.97 | 0.15 | 3.202 | 1.490 | 18 | 0.060 | 0.004 | 0.049 | 0.076 | 2.793 | 0.746 |
|
| SiF2H2···NH3 (Cs) | −6.99 | −5.73 | 4.74 | 2.400 | 1.613 | 95 | 0.225 | −0.066 | 0.083 | 0.103 | 4.573 | 0.985 |
|
| SiF3H···NH3 (Cs) | −7.66 | −5.77 | 11.77 | 2.205 | 1.617 | 139 | 0.320 | −0.126 | 0.249 | 0.191 | 4.698 | 1.000 |
|
| HSiF3···NH3 (C3v) | −6.30 | −4.14 | 21.22 | 2.104 | 1.474 | 172 | 0.390 | −0.149 | 0.493 | 0.280 | 2.974 | 0.772 |
|
| SiF4···NH3 (C3v) | −11.40 | −8.86 | 21.15 | 2.072 | 1.609 | 176 | 0.419 | −0.164 | 0.678 | 0.335 | 5.046 | 1.041 |
|
| |||||||||||||
|
| FGeH3···NH3 (C3v) | −7.77 | −7.18 | 1.40 | 2.624 | 1.816 | 44 | 0.169 | −0.008 | 0.149 | 0.143 | 4.125 | 0.929 |
|
| ClGeH3···NH3 (C3v) | −6.22 | −5.75 | 1.07 | 2.755 | 2.216 | 64 | 0.134 | −0.001 | 0.103 | 0.116 | 1.921 | 0.604 |
|
| BrGeH3···NH3 (C3v) | −6.01 | −5.53 | 1.07 | 2.776 | 2.375 | 66 | 0.132 | 0.000 | 0.097 | 0.112 | 1.591 | 0.543 |
|
| (HO)GeH3···NH3 (Cs) | −4.58 | −4.18 | 0.50 | 2.910 | 1.818 | 39 | 0.101 | 0.004 | 0.089 | 0.107 | 3.49 | 0.845 |
|
| GeH4···NH3 (C3v) | −1.99 | −1.79 | 0.09 | 3.323 | 1.550 | 15 | 0.052 | 0.005 | 0.047 | 0.074 | 2.580 | 0.713 |
|
| |||||||||||||
|
| CO2···NH3 (Cs) | −3.09 | −2.84 | 0.11 | 2.922 | 1.167 | 5 | 0.107 | 0.002 | 0.079 | 0.100 | 15.183 | 1.938 |
|
| SCO···NH3 (Cs) | −1.97 | −1.69 | 0.02 | 3.209 | 1.573 | 3 | 0.046 | 0.009 | 0.047 | 0.074 | 7.081 | 1.260 |
|
| CF2O···NH3 (Cs) | −5.55 | −4.82 | 0.27 | 2.687 | 1.178 | 12 | 0.113 | 0.005 | 0.122 | 0.127 | 14.393 | 1.880 |
|
| CF2S···NH3 (Cs) | −3.91 | −3.23 | 0.11 | 2.897 | 1.607 | 9 | 0.078 | 0.008 | 0.086 | 0.105 | 6.397 | 1.190 |
|
| CF2S···NH3 (Cs) | 1.45 | 4.28 | 24.13 | 1.587 | 1.701 | 545 | 1.388 | −1.339 | 1.414 | 0.508 | 3.828 | 0.891 |
|
| SiF2O···NH3 (Cs) | −44.14 | −42.16 | 7.96 | 1.917 | 1.529 | 229 | 0.569 | −0.224 | 1.838 | 0.589 | 8.803 | 1.425 |
|
| |||||||||||||
|
| CH3+···NH3 (C3v) | −110.25 | −109.01 | 24.95 | 1.511 | 1.087 | 329 | 1.517 | −1.952 | 3.766 | 0.882 | 5.458 | 1.088 |
|
| FNH3+···NH3 (C3v) | −23.14 | −22.77 | 0.43 | 2.619 | 1.374 | 35 | 0.142 | 0.012 | 0.364 | 0.236 | 5.226 | 1.062 |
|
| FCH3···Cl− (C3v) | −9.77 | −9.34 | 0.39 | 3.179 | 1.419 | 23 | 0.064 | 0.010 | 0.128 | 0.131 | 4.155 | 0.933 |
|
| FSiH3···Cl− (C3v) | −20.73 | −19.49 | 12.03 | 2.504 | 1.703 | 263 | 0.277 | −0.115 | 0.370 | 0.238 | 2.793 | 0.746 |
|
| FGeH3···Cl− (C3v) | −26.10 | −25.09 | 10.71 | 2.566 | 1.892 | 238 | 0.290 | −0.069 | 0.455 | 0.268 | 2.451 | 0.693 |
|
| CO2···Cl− (Cs) | −7.45 | −6.99 | 1.44 | 2.920 | 1.170 | 31 | 0.107 | 0.002 | 0.109 | 0.120 | 14.879 | 1.916 |
|
| SCO···Cl− (Cs) | −5.36 | −4.96 | 0.52 | 3.143 | 1.581 | 24 | 0.073 | 0.006 | 0.079 | 0.100 | 6.568 | 1.208 |
|
| CF2S···Cl− (Cs) | −16.81 | −13.83 | 32.63 | 1.898 | 1.725 | 798 | 1.031 | −0.593 | 1.100 | 0.441 | 3.414 | 0.835 |
* Binding energies (ΔE), counterpoise corrected binding energies ΔE and monomers’ deformation energies upon complexation (E) in kcal/mol. XT bond distance r(XT) and tetrel bond distance r(TA) in Å. Density at the TA critical point ρ in e/Å3, energy density at the TA critical point H in Hartree/Å3. Natural population analysis (NPA) charge transfer in mili-electrons (me). TA and XT local stretching force constant (k) in mdyn/Å and bond strength order (BSO) n values. Computed at the CCSD(T)/aug-cc-pVTZ level of theory. a Calculated at a cage critical point (see Ref. [147]). b Covalent bond, see text.
Geometry, vibrational spectroscopy data, and values of the electrostatic potential for the monomers *.
| # | Monomers | r(XT) | n(XT) | Dipole |
| ||
|---|---|---|---|---|---|---|---|
|
| F−CH3 | 0.90 | 1.389 | 5.107 | 1.048 | 1.88 | 2.5 |
|
| Cl−CH3 | 0.76 | 1.792 | 3.068 | 0.786 | 1.92 | 4.3 |
|
| Br−CH3 | 0.69 | 1.948 | 2.616 | 0.718 | 1.86 | 5.4 |
|
| HO−CH3 | 0.47 | 1.426 | 4.749 | 1.006 | 3.1 | |
|
| F−CF3 | 0.93 | 1.321 | 6.204 | 1.170 | 0.00 | 2.8 |
|
| F−SiH3 | 1.64 | 1.613 | 5.120 | 1.049 | 1.38 | 4.1 |
|
| Cl−SiH3 | 1.51 | 2.072 | 2.799 | 0.746 | 1.41 | 6.2 |
|
| Br−SiH3 | 1.46 | 2.238 | 2.321 | 0.672 | 1.38 | 7.4 |
|
| HO−SiH3 | 1.14 | 1.664 | 4.517 | 0.978 | 4.9 | |
|
| H−SiH3 | 0.81 | 1.483 | 2.903 | 0.762 | 0.00 | 4.6 |
|
| F−SiH2F | 1.72 | 1.597 | 5.497 | 1.092 | 3.5 | |
|
| F−SiF2H | 1.78 | 1.583 | 5.884 | 1.135 | 3.8 | |
|
| H−SiF3 | 1.44 | 1.458 | 3.273 | 0.815 | 1.43 | 3.8 |
|
| F−SiF3 | 1.98 | 1.571 | 6.281 | 1.178 | 0.00 | 3.3 |
|
| F−GeH3 | 1.93 | 1.793 | 4.951 | 1.030 | 2.25 | 4.7 |
|
| Cl−GeH3 | 1.66 | 2.175 | 2.491 | 0.699 | 2.04 | 6.9 |
|
| Br−GeH3 | 1.57 | 2.330 | 2.091 | 0.633 | 1.93 | 8.1 |
|
| HO−GeH3 | 1.33 | 1.802 | 3.872 | 0.896 | 5.5 | |
|
| H−GeH3 | 0.73 | 1.542 | 2.693 | 0.730 | 0.00 | 5.2 |
|
| O=CO | 1.18 | 1.167 | 15.613 | 1.969 | 0.00 | 2.6 |
|
| S=CO | 0.64 | 1.575 | 7.227 | 1.275 | 0.68 | 5.2 |
|
| O=CF2 | 1.85 | 1.177 | 14.680 | 1.902 | 1.00 | 2.8 |
|
| S=CF2 | 1.29 | 1.603 | 6.626 | 1.214 | 0.16 | 5.2 |
|
| O=SiF2 | 3.46 | 1.517 | 9.243 | 1.465 | 2.31 | 4.0 |
|
| CH3+ | 10.01 | 0.00 | 1.3 | |||
|
| F−NH3+ | 8.58 | 1.368 | 5.642 | 1.109 | 4.78 | 1.7 |
* Maximum electrostatic potential at the -hole of X ((X)) in eV. XT bond distance r(XT) in Å, XT local stretching force in mdyn/Å , XT bond strength order n(XT). Dipole moment in Debye and static isotropic polarizability in Å. All values were calculated with CCSD(T)/aug-cc-pVTZ.
Figure 4Power relationship between the relative bond strength order (BSO) n and the local stretching force constants of the TA interaction of complexes 1–35. C donors are gray, Si donors are blue, Ge donors are purple, double bonded donors are green, and charge-assisted TBs are orange. Complex 28 is not shown. Calculated at the CCSD(T)/aug-cc-pVTZ level of theory.
Figure 5Comparison of the relative bond strength order (BSO) n and the energy density at the bond critical point of the tetrel bond of complexes. C tetrel bonds are gray, Si tetrel bonds are blue, Ge tetrel bonds are purple, double bonded tetrel bonds are green, and anionic tetrel bonds are orange. Complexes 26b–28 and 35 are not shown. Calculated at the CCSD(T)/aug-cc-pVTZ level of theory.
Naural Bond Orbital (NBO) electron delocalization energies involving the lone pair of NH3 *.
| # | Complex | ||||
|---|---|---|---|---|---|
|
| FSiH3···NH3 | 15.7 | 2.4 | 2.4 | 2.4 |
|
| SiF2H2···NH3 | 12.7 | 6.2 | 3.1 | 3.1 |
|
| SiF3H···NH3 | 16.3 | 11.9 | 11.9 | 7.5 |
|
| SiF3H···NH3 | 11.4 | 23.5 | 23.5 | 23.5 |
|
| SiHF3···NH3 | 7.9 | 16.8 | 16.8 | 16.8 |
|
| SiF4···NH3 | 20.7 | 19.5 | 19.5 | 19.5 |
* NBO electron delocalization energies from the second-order perturbation analysis referent to the interaction involving the lp(N) orbital of NH3 and the (X-Si) (collinear to the TB), the (Si-R), (Si-R’) and the (Si-R”) (peripheral to the TB, see Figure 1) of selected tetrel donors (see Supporting Information Figure S5). Values are in kcal/mol. Calculated with B97XD/aug-cc-pVTZ. a Complex 16b with an elongated tetrel bond (TB) to match the TB distance of 16a.
Figure 6Relationship between the binding energy and interactomic distance computed at the CCSD(T)/aug-cc-pVTZ level of theory. All geometric parameters were optimized at each point of the curves for fixed r(TA) values. The blue dots represent the binding energy at the minima of complex 26 and the minimum of 35; the black lines connecting points were used to improve interpretation.
Summary of energetics, geometric and vibrational spectroscopy data for other types of interactions *.
| Complex |
|
| r | CT |
|
|
| n |
| n | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| TA | TA | TA | TA | TA | XT | XT | |||||
| F2···OH2 (Cs) | −1.42 | −1.15 | 2.662 | 0.005 | 0.066 | 0.022 | 0.057 | 0.083 | 4.488 | 0.974 | |
| Cl2···OH2 (Cs) | −2.98 | −2.62 | 2.808 | 0.015 | 0.098 | 0.018 | 0.097 | 0.112 | 2.896 | 0.761 | |
| FCl···OH2 (Cs) | −5.22 | −4.75 | 2.566 | 0.032 | 0.163 | 0.016 | 0.170 | 0.154 | 3.967 | 0.909 | |
| FSH···OH2 (Cs) | −5.69 | −5.15 | 2.659 | 0.028 | 0.138 | 0.010 | 0.152 | 0.144 | 4.011 | 0.914 | |
| FPH2···OH2 (Cs) | −4.63 | −4.02 | 2.780 | 0.021 | 0.107 | 0.006 | 0.118 | 0.125 | 4.198 | 0.938 | |
| F2···NH3 (C3v) | −2.00 | −1.69 | 2.615 | 0.017 | 0.097 | 0.027 | 0.062 | 0.087 | 3.821 | 0.890 | |
| Cl2···NH3 (C3v) | −4.92 | −4.43 | 2.664 | 0.055 | 0.172 | 0.006 | 0.132 | 0.133 | 2.370 | 0.680 | |
| FCl···NH3 (C3v) | −10.13 | −9.39 | 2.320 | 0.145 | 0.358 | −0.058 | 0.311 | 0.216 | 2.687 | 0.729 | |
| FSH···NH3 (Cs) | −8.23 | −7.58 | 2.512 | 0.081 | 0.235 | −0.020 | 0.194 | 0.166 | 3.309 | 0.820 | |
| FPH2···NH3 (Cs) | −6.81 | −6.10 | 2.663 | 0.057 | 0.171 | −0.012 | 0.144 | 0.140 | 3.794 | 0.886 | |
| FCl···Cl− (C | −30.07 | −28.98 | 2.316 | 0.496 | 0.547 | −0.161 | 0.855 | 0.382 | 1.212 | 0.465 | |
| FSH···Cl− (Cs) | −23.46 | −22.48 | 2.493 | 0.305 | 0.377 | −0.092 | 0.443 | 0.264 | 1.466 | 0.518 | |
| FPH2···Cl− (Cs) | −19.62 | −18.62 | 2.649 | 0.208 | 0.266 | −0.058 | 0.307 | 0.214 | 2.136 | 0.641 |
* Binding energies (E) and conterpoise corrected binding energies in kcal/mol. Intermonomer bond distance r(TA) in Å. Density at the TA critical point in e/Å3, energy density at the TA critical point in Hartree/Å3. NPA charge transfer (CT) in e. TA and XT local stretching force constant () in mdyn/Å and BSO n values. Computed at the CCSD(T)/aug-cc-pVTZ level of theory.