Literature DB >> 27472016

Anharmonic Theoretical Vibrational Spectroscopy of Polypeptides.

Paweł T Panek1, Christoph R Jacob1.   

Abstract

Because of the size of polypeptides and proteins, the quantum-chemical prediction of their vibrational spectra presents an exceptionally challenging task. Here, we address one of these challenges, namely, the inclusion of anharmonicities. By performing the expansion of the potential energy surface in localized-mode coordinates instead of the normal-mode coordinates, it becomes possible to calculate anharmonic vibrational spectra of polypeptides efficiently and reliably. We apply this approach to calculate the infrared, Raman, and Raman optical activity spectra of helical alanine polypeptides consisting of up to 20 amino acids. We find that while anharmonicities do not alter the band shapes, simple scaling procedures cannot account for the different shifts found for the individual bands. This closes an important gap in theoretical vibrational spectroscopy by making it possible to quantify the anharmonic contributions and opens the door to a first-principles calculation of multidimensional vibrational spectra.

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Year:  2016        PMID: 27472016     DOI: 10.1021/acs.jpclett.6b01451

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  5 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

2.  Retinal Vibrations in Bacteriorhodopsin are Mechanically Harmonic but Electrically Anharmonic: Evidence From Overtone and Combination Bands.

Authors:  Victor A Lorenz-Fonfria; Kiyoshi Yagi; Shota Ito; Hideki Kandori
Journal:  Front Mol Biosci       Date:  2021-12-17

3.  Static Electron Correlation in Anharmonic Molecular Vibrations: A Hybrid TAO-DFT Study.

Authors:  Magnus W D Hanson-Heine
Journal:  J Phys Chem A       Date:  2022-09-27       Impact factor: 2.944

4.  Quantitative Assessment of Tetrel Bonding Utilizing Vibrational Spectroscopy.

Authors:  Daniel Sethio; Vytor Oliveira; Elfi Kraka
Journal:  Molecules       Date:  2018-10-25       Impact factor: 4.411

5.  Unravelling the structural complexity of glycolipids with cryogenic infrared spectroscopy.

Authors:  Carla Kirschbaum; Kim Greis; Eike Mucha; Lisa Kain; Shenglou Deng; Andreas Zappe; Sandy Gewinner; Wieland Schöllkopf; Gert von Helden; Gerard Meijer; Paul B Savage; Mateusz Marianski; Luc Teyton; Kevin Pagel
Journal:  Nat Commun       Date:  2021-02-22       Impact factor: 14.919

  5 in total

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