| Literature DB >> 29891824 |
Wiktor Zierkiewicz1, Mariusz Michalczyk2, Steve Scheiner3.
Abstract
The σ-hole <span class="Chemical">tetrel bonds formed by a tetravalent molecule are compared with those involving a π-hole above the <class="Chemical">span class="Chemical">tetrel atom in a trivalent bonding situation. The former are modeled by TH₄, TH₃F, and TH₂F₂ (T = Si, Ge, Sn) and the latter by TH₂=CH₂, THF=CH₂, and TF₂=CH₂, all paired with NH₃ as Lewis base. The latter π-bonded complexes are considerably more strongly bound, despite the near equivalence of the σ and π-hole intensities. The larger binding energies of the π-dimers are attributed to greater electrostatic attraction and orbital interaction. Each progressive replacement of H by F increases the strength of the tetrel bond, whether σ or π. The magnitudes of the maxima of the molecular electrostatic potential in the two types of systems are not good indicators of either the interaction energy or even the full Coulombic energy. The geometry of the Lewis acid is significantly distorted by the formation of the dimer, more so in the case of the σ-bonded complexes, and this deformation intensifies the σ and π holes.Entities:
Keywords: AIM; DFT; MEP; MP2; NBO
Mesh:
Year: 2018 PMID: 29891824 PMCID: PMC6100375 DOI: 10.3390/molecules23061416
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1MEPs of TH4, TH3F and TH2F2 (T = Si, Ge or Sn) computed on the 0.001 au isodensity surface at the MP2/aug-cc-pVDZ-PP level. Colour ranges, in kcal/mol, are: red greater than 15, yellow between 8 and 15, green between 0 and 8, blue below 0 kcal/mol. The letters a and b mean different types of Vs,max.
Figure 2MEPs of TH2-F=CH2 isolated molecules, computed on the 0.001 au isodensity surface at the MP2/aug-cc-pVDZ-PP level. Colour ranges, in kcal/mol, are: red greater than 15, yellow between 8 and 15, green between 0 and 8, blue below 0 kcal/mol. The letters c, d and e mean different types of Vs, max.
Values of two maxima in the MEPs (Vs,max, kcal/mol) of tetravalent σ-hole donors at the MP2/aug-cc-pVDZ-PP level of theory.
| T | Vs, max a | TH4 | TH3F | TH2F2 |
|---|---|---|---|---|
| Si | a | - | 41.8 | 43.9 |
| b | 19.8 | 26.4 | 31.1 | |
| Ge | a | - | 46.0 | 49.8 |
| b | 18.4 | 25.3 | 30.4 | |
| Sn | a | - | 54.8 | 59.6 |
| b | 25.0 | 31.7 | 37.8 |
a a and b maxima lie respectively on the extensions of T–F and T–H bonds (see Figure 1).
Values of maxima in the MEPs (Vs,max, kcal/mol) of TR2=CH2 π-hole donors, at the MP2/aug-cc-pVDZ-PP level of theory.
| T | Vs, max a | TH2=CH2 | THF=CH2 | TF2=CH2 |
|---|---|---|---|---|
| Si | c | 21.0 | 32.4 | 48.8 |
| d | 10.1 | 23.9 | 19.5 | |
| e | 12.1 | 16.3 | 18.8 | |
| Ge | c | 19.4 | 29.8 | 44.8 |
| d | 10.8 | 32.5 | 27.0 | |
| e | 12.2 | 19.2 | 24.0 | |
| Snb | c | 24.0 | 34.8 | 53.3 |
| d | 14.8 | 43.6 | 37.3 | |
| e | 11.1 | 19.5 | 25.1 |
a Locations of the maxima are displayed in Figure 2. b In the SnH2=CH2 molecule there is another Vs, max with a value of 18.1 kcal/mol located on the extension of the C=Sn bond (between two c maxima).
Figure 3Optimized structures of σ-hole bonded tetrel complexes. (a) and (b) refer to σ-hole positions in Figure 1 (N—dark blue, T—green, H—white, F—Light blue).
Interaction energy (Eint) corrected for BSSE, of indicated Lewis acid with NH3 in σ-hole bonded complexes, along with deformation energy (Edef) of individual subunits, intermolecular distance and angle (energies in kcal/mol, distances in Å, angles in degrees). Data obtained at the MP2 level of theory.
| Lewis Acid | Eint | Edef A a | Edef B b | R(N∙∙∙T) | θ(R–T∙∙∙N) c |
|---|---|---|---|---|---|
| SiH4 | −1.8 | 0.14 | 0 | 3.232 | 180 |
| GeH4 | −1.59 | 0.11 | 0 | 3.332 | 179.6 |
| SnH4 | −2.81 | 0.37 | 0 | 3.170 | 180 |
| SiH3F(a) | −7.43 | 1.93 | 0 | 2.557 | 180 |
| SiH3F(b) | −3.24 | 0.34 | 0 | 3.102 | 174 |
| GeH3F(a) | −7.34 | 1.49 | 0 | 2.630 | 179.9 |
| GeH3F(b) | −3.72 | 0.29 | 0 | 3.134 | 170.5 |
| SnH3F(a) | −10.29 | 1.78 | 0 | 2.667 | 180 |
| SnH3F(b) | −7.43 | 2.23 | 0.03 | 2.793 | 166.2 |
| SiH2F2(a) | −10.42 | 5.07 | 0.02 | 2.390 | 177.6 |
| SiH2F2(b) | −4.12 | 1.38 | 0 | 2.865 | 175.8 |
| GeH2F2(a) | −10.84 | 3.97 | 0.02 | 2.458 | 174.3 |
| GeH2F2(b) | −11.34 | 9.14 | 0.06 | 2.364 | 168.2 |
| SnH2F2(a) | −15.29 | 3.77 | 0.04 | 2.521 | 169.2 |
| SnH2F2(b) | −20.07 | 10.45 | 0.14 | 2.374 | 155.8 |
a Deformation energy of Lewis acid. b Deformation energy of Lewis base (NH3).c R refers to F or H in complexes (a) and (b), respectively.
Planarity measure and MEP maximum of TH2F2 molecule in its geometry within the monomer and within its complex with NH3.
| Σθ(R1TR2), degs | Vs, max, kcal/mol | |||||
|---|---|---|---|---|---|---|
| Monomer | Complex | Change | Monomer | Complex | Change | |
| Si a | 332.3 | 350.0 | 17.7 | 43.9 | 60.9 | 17.0 |
| Si b | 324.1 | 334.3 | 10.2 | 31.1 | 42.9 | 11.8 |
| Ge a | 335.1 | 351.0 | 15.9 | 49.8 | 63.7 | 13.9 |
| Ge b | 320.7 | 346.9 | 26.2 | 30.4 | 58.9 | 28.5 |
| Sn a | 337.1 | 352.9 | 15.8 | 59.6 | 74.0 | 14.4 |
| Sn b | 318.4 | 347.5 | 29.1 | 37.8 | 72.8 | 35.0 |
EDA/BLYP-D3(BJ)/ZORA/TZ2P decomposition of the interaction energy of σ-hole bonded complexes into Pauli repulsion (EPauli), electrostatic (Eelstat), orbital interaction (Eoi) and dispersion (Edisp) terms. All energies in kcal mol−1. The relative values in percent express the contribution of each to the sum of all attractive energy terms.
| Lewis Acid | ΔE | EPauli | Eelec | % | Eoi | % | Edisp | % |
|---|---|---|---|---|---|---|---|---|
| SiH4 | −2.12 | 5.8 | −4.2 | 53 | −1.98 | 25 | −1.73 | 22 |
| GeH4 | −1.69 | 5.03 | −3.52 | 52 | −1.53 | 23 | −1.67 | 25 |
| SnH4 | −3.04 | 10.55 | −8.12 | 60 | −3.18 | 23 | −2.29 | 17 |
| SiH3F(a) | −8.64 | 29.45 | −22.44 | 59 | −12.88 | 34 | −2.77 | 7 |
| SiH3F(b) | −3.66 | 8.78 | −7.43 | 60 | −2.85 | 23 | −2.15 | 17 |
| GeH3F(a) | −7.29 | 27.28 | −21.29 | 62 | −10.59 | 31 | −2.7 | 8 |
| GeH3F(b) | −3.95 | 9.52 | −8.24 | 61 | −2.99 | 22 | −2.24 | 17 |
| SnH3F(a) | −9.92 | 33.5 | −27.86 | 64 | −12.54 | 29 | −3.01 | 7 |
| SnH3F(b) | −7.54 | 28.65 | −23.26 | 64 | −9.85 | 27 | −3.07 | 8 |
| SiH2F2(a) | −11.22 | 48.26 | −36 | 61 | −20.34 | 34 | −3.11 | 5 |
| SiH2F2(b) | −4.8 | 16.04 | −13.24 | 64 | −4.99 | 24 | −2.6 | 12 |
| GeH2F2(a) | −10 | 45.54 | −34.9 | 63 | −17.59 | 32 | −3.05 | 5 |
| GeH2F2(b) | −10.53 | 62.38 | −46.24 | 63 | −23.32 | 32 | −3.34 | 5 |
| SnH2F2(a) | −14.16 | 50.53 | −41.9 | 65 | −19.42 | 30 | −3.36 | 5 |
| SnH2F2(b) | −18.91 | 75.93 | −61.53 | 65 | −29.58 | 31 | −3.73 | 4 |
Figure 4Optimized structures of π-hole bonded tetrel complexes (N—dark blue, T—green, H—white, F—light blue).
Interaction energy (Eint) corrected for BSSE, subunit deformation energy (Edef), and intermolecular geometrical parameters (energies in kcal/mol, distances in Å, angles in degrees) in π-hole bonded complexes with NH3. Data obtained at the MP2 level of theory.
| Lewis Acid | Eint | Eint (Planar) a | Edef A | Edef B | R(N∙∙∙T) | θ(R–T∙∙∙N) |
|---|---|---|---|---|---|---|
| SiH2=CH2 | −7.82 | −3.57 | 2.08 | 0.10 | 2.176 | 113.3 |
| GeH2=CH2 | −3.72 | −2.79 | 0.88 | 0.04 | 2.460 | 112.0 |
| SnH2=CH2 | −5.79 | −4.80 | 0.63 | 0.05 | 2.582 | 104.6 |
| SiHF=CH2 | −19.64 | −8.10 | 6.29 | 0.15 | 2.052 | 111.9 |
| GeHF=CH2 | −14.13 | −6.71 | 4.84 | 0.14 | 2.184 | 110.8 |
| SnHF=CH2 | −19.37 | −10.49 | 6.41 | 0.18 | 2.356 | 100.2 |
| SiF2=CH2 | −28.30 | −15.70 | 5.81 | 0.15 | 2.003 | 116.2 |
| GeF2=CH2 | −27.26 | −14.90 | 8.01 | 0.16 | 2.094 | 111.5 |
| SnF2=CH2 | −29.02 | −19.17 | 6.75 | 0.21 | 2.296 | 106.4 |
a Lewis acid molecule restrained to planarity.
EDA/BLYP-D3(BJ)/ZORA/TZ2P decomposition of the interaction energy of π-hole bonded complexes into Pauli repulsion (EPauli), electrostatic (Eelstat), orbital interaction (Eoi) and dispersion (Edisp) terms. All energies in kcal/mol. The relative values in percent express the contribution of each to the sum of all attractive energy terms.
| Lewis Acid | Eint | EPauli | Eelec | % | Eoi | % | Edisp | % |
|---|---|---|---|---|---|---|---|---|
| SiH2=CH2 | −9.15 | 101.19 | −64.42 | 58 | −43.04 | 39 | −2.88 | 3 |
| GeH2=CH2 | −4.24 | 54.47 | −35.18 | 60 | −20.63 | 35 | −2.91 | 5 |
| SnH2=CH2 | −6.73 | 54.61 | −38.58 | 63 | −19.77 | 32 | −3.00 | 5 |
| SiHF=CH2 | −19.87 | 128.97 | −86.78 | 58 | −58.74 | 40 | −3.17 | 2 |
| GeHF=CH2 | −12.33 | 107.09 | −72.17 | 60 | −44.06 | 37 | −3.19 | 3 |
| SnHF=CH2 | −19.09 | 84.72 | −65.89 | 63 | −34.47 | 33 | −3.46 | 3 |
| SiF2=CH2 | −27.53 | 139.3 | −97.5 | 58 | −66.02 | 40 | −3.31 | 2 |
| GeF2=CH2 | −24.73 | 122.68 | −88.6 | 60 | −55.41 | 38 | −3.39 | 2 |
| SnF2=CH2 | −26.98 | 88.69 | −74.07 | 64 | −38.05 | 33 | −3.55 | 3 |
Planarity measure of TR2=CH2 molecule in its geometry within the monomer and its π-bonded c complex with NH3.
| Σθ(R1CR2), degs | Σθ(R1TR2), degs | |||||
|---|---|---|---|---|---|---|
| Monomer | Complex | Change | Monomer | Complex | Change | |
| SiH2=CH2 | 360 | 359.9 | −0.1 | 359.9 | 353.9 | −6.0 |
| GeH2=CH2 | 360 | 359.6 | −0.4 | 359.9 | 356.8 | −3.1 |
| SnH2=CH2 | 360 | 359.6 | −0.4 | 360 | 359 | −1.0 |
| SiHF=CH2 | 359.9 | 359.6 | −0.3 | 360 | 353.3 | −6.7 |
| GeHF=CH2 | 360 | 359 | −1.0 | 360 | 355.6 | −4.4 |
| SnHF=CH2 | 359.8 | 343.4 | −16.4 | 359.9 | 359.8 | −0.1 |
| SiF2=CH2 | 360 | 359.5 | −0.5 | 360 | 352.5 | −7.5 |
| GeF2=CH2 | 353.7 | 345.6 | −8.1 | 357.9 | 357 | −0.9 |
| SnF2=CH2 | 337.5 | 327.2 | −10.3 | 351.6 | 359.8 | +8.2 |
Magnitude of Vs, max (kcal/mol) on T atom of isolated TR2=CH2 molecule and its value when the molecule is distorted to that within the π-bonded c complex.
| Monomer | Complex | Change | |
|---|---|---|---|
| SiH2=CH2 | 21.0 | 23.0 | 2.0 |
| GeH2=CH2 | 19.4 | 20.6 | 1.2 |
| SnH2=CH2 | 24.0 | 24.4 | 0.4 |
| SiHF=CH2 | 32.4 | 39.2 | 6.8 |
| GeHF=CH2 | 29.8 | 34.7 | 4.9 |
| SnHF=CH2 | 34.8 | 49.1 | 14.3 |
| SiF2=CH2 | 48.8 | 54.3 | 5.5 |
| GeF2=CH2 | 44.8 | 58.4 | 13.6 |
| SnF2=CH2 | 53.3 | 78.5 | 25.2 |