Literature DB >> 23135342

The pnicogen bond: its relation to hydrogen, halogen, and other noncovalent bonds.

Steve Scheiner1.   

Abstract

Among a wide range of noncovalent interactions, hydrogen (H) bonds are well known for their specific roles in various chemical and biological phenomena. When describing conventional hydrogen bonding, researchers use the notation AH···D (where A refers to the electron acceptor and D to the donor). However, the AH molecule engaged in a AH···D H-bond can also be pivoted around by roughly 180°, resulting in a HA···D arrangement. Even without the H atom in a bridging position, this arrangement can be attractive, as explained in this Account. The electron density donated by D transfers into a AH σ* antibonding orbital in either case: the lobe of the σ* orbital near the H atom in the H-bonding AH···D geometry, or the lobe proximate to the A atom in the HA···D case. A favorable electrostatic interaction energy between the two molecules supplements this charge transfer. When A belongs to the pnictide family of elements, which include phosphorus, arsenic, antimony, and bismuth, this type of interaction is called a pnicogen bond. This bonding interaction is somewhat analogous to the chalcogen and halogen bonds that arise when A is an element in group 16 or 17, respectively, of the periodic table. Electronegative substitutions, such as a F for a H atom opposite the electron donor atom, strengthen the pnicogen bond. For example, the binding energy in FH(2)P···NH(3) greatly exceeds that of the paradigmatic H-bonding water dimer. Surprisingly, di- or tri-halogenation does not produce any additional stabilization, in marked contrast to H-bonds. Chalcogen and halogen bonds show similar strength to the pnicogen bond for a given electron-withdrawing substituent. This insensitivity to the electron-acceptor atom distinguishes these interactions from H-bonds, in which energy depends strongly upon the identity of the proton-donor atom. As with H-bonds, pnicogen bonds can extract electron density from the lone pairs of atoms on the partner molecule, such as N, O, and S. The π systems of carbon chains can donate electron density in pnicogen bonds. Indeed, the strength of A···π pnicogen bonds exceeds that of H-bonds even when using strong proton donors such as water with the same π system. H-bonds typically have a high propensity for a linear AH···D arrangement, but pnicogen bonds show an even greater degree of anisotropy. Distortions of pnicogen bonds away from their preferred geometry cause a more rapid loss of stability than in H-bonds. Although often observed in dimers in the gas phase, pnicogen bonds also serve as the glue in larger aggregates, and researchers have found them in a number of diffraction studies of crystals.

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Year:  2012        PMID: 23135342     DOI: 10.1021/ar3001316

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  53 in total

1.  Cooperative effects between halogen bonds and pnicogen bonds in XBr∙∙∙OFH2P∙∙∙NH3 (X = F, Cl, CN, NC, OH, and NO2) complexes.

Authors:  Qiang Zhao
Journal:  J Mol Model       Date:  2015-12-09       Impact factor: 1.810

2.  CNXeCl and CNXeBr species as halogen bond donors: a quantum chemical study on the structure, properties, and nature of halogen···nitrogen interactions.

Authors:  Mehdi D Esrafili; Parisa Juyban
Journal:  J Mol Model       Date:  2014-03-29       Impact factor: 1.810

3.  A new theoretical analysis of the cooperative effect in T-shaped hydrogen complexes of CnHm∙∙∙HCN∙∙∙HW with n = 2, m = 2 or 4, and W = F or CN.

Authors:  Boaz G Oliveira; Tamires F Costa; Regiane C M U Araújo
Journal:  J Mol Model       Date:  2013-05-31       Impact factor: 1.810

4.  Pnictogen bonding in pyrazine•PnX5 (Pn = P, As, Sb and X = F, Cl, Br) complexes.

Authors:  Jindřich Fanfrlík; Wiktor Zierkiewicz; Petr Švec; Zdeňka Růžičková; Jan Řezáč; Mariusz Michalczyk; Aleš Růžička; Danuta Michalska; Pavel Hobza
Journal:  J Mol Model       Date:  2017-10-30       Impact factor: 1.810

5.  On the reciprocal relationship between σ-hole bonding and (anti)aromaticity gain in ketocyclopolyenes.

Authors:  Hari Ram Paudel; Lucas José Karas; Judy I-Chia Wu
Journal:  Org Biomol Chem       Date:  2020-07-15       Impact factor: 3.876

6.  Chalcogen-bonded complexes. Selenium-bound adducts of NH3, H2O, PH3, and H2S with OCSe, SCSe, and CSe2.

Authors:  Ponnadurai Ramasami; Thomas A Ford
Journal:  J Mol Model       Date:  2015-02-03       Impact factor: 1.810

7.  Dual functions of Lewis acid and base of Se in F2C=Se and their interplay in F 2CSe•••NH 3•••HX.

Authors:  Xin Guo; Qingzhong Li
Journal:  J Mol Model       Date:  2015-05-28       Impact factor: 1.810

8.  A comparative study of the chalcogen bond, halogen bond and hydrogen bond S⋯O/Cl/H formed between SHX and HOCl.

Authors:  Yi Fang; An Yong Li; Fei Yan Ma
Journal:  J Mol Model       Date:  2015-02-25       Impact factor: 1.810

9.  Theoretical study of noncovalent interactions in XCN···YO2H (X = F, Cl, Br, I; Y = P, As, Sb) complexes.

Authors:  Qiang Zhao
Journal:  J Mol Model       Date:  2017-05-12       Impact factor: 1.810

10.  Competition between tetrel bond and pnicogen bond in complexes of TX3-ZX2 and NH3.

Authors:  Yan Li; Zhefeng Xu
Journal:  J Mol Model       Date:  2018-08-20       Impact factor: 1.810

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