Literature DB >> 30701357

Correlation between molecular acidity (pKa) and vibrational spectroscopy.

Niraj Verma1, Yunwen Tao2, Bruna Luana Marcial3, Elfi Kraka4.   

Abstract

Molecular acidity is an important physicochemical property, which is often represented by the pKa value as the measure of acidity strength. However, the accurate calculation and prediction of pKa values is still an unsolved problem for computational chemistry. In this work, we present for the first time a direct correlation between pKa values and local vibrational frequencies for 15 different groups of compounds with various substituents. This correlation was derived from a quadratic function of two selected local vibrational frequencies as independent variables used to characterize electronic structure features influencing the molecular acidity. In total, 180 molecules were investigated with this correlation model. For each group of molecules, we found a strong correlation with root mean squared errors and mean absolute errors of less than 0.11 and 0.09 pKa units, respectively. The correlation between pKa and local vibrational modes, established in this work, can be generally applied to all compounds whose pKa values are dominated by electronic substituent effects. In this regard, the new correlation model constitutes a powerful link between the well-known Hammett equation and vibrational spectroscopy. Furthermore, it allows a quick prediction of the pKa values for new group members with different substituents. Graphical Abstract pKa estimation via vibrational spectroscopy.

Keywords:  Hammett equation; Linear regression; Local vibrational mode analysis; Vibrational spectroscopy; pKa value

Year:  2019        PMID: 30701357     DOI: 10.1007/s00894-019-3928-4

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  73 in total

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3.  Energies, structures, and electronic properties of molecules in solution with the C-PCM solvation model.

Authors:  Maurizio Cossi; Nadia Rega; Giovanni Scalmani; Vincenzo Barone
Journal:  J Comput Chem       Date:  2003-04-30       Impact factor: 3.376

4.  Estimation of pKa using quantum topological molecular similarity descriptors: application to carboxylic acids, anilines and phenols.

Authors:  U A Chaudry; P L A Popelier
Journal:  J Org Chem       Date:  2004-01-23       Impact factor: 4.354

5.  Unified approach for molecular dynamics and density-functional theory.

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Journal:  Phys Rev Lett       Date:  1985-11-25       Impact factor: 9.161

6.  Accurate pKa determination for a heterogeneous group of organic molecules.

Authors:  Marcel Schmidt am Busch; Ernst-Walter Knapp
Journal:  Chemphyschem       Date:  2004-10-18       Impact factor: 3.102

7.  Development, validation, and application of adapted PEOE charges to estimate pKa values of functional groups in protein-ligand complexes.

Authors:  Paul Czodrowski; Ingo Dramburg; Christoph A Sotriffer; Gerhard Klebe
Journal:  Proteins       Date:  2006-11-01

8.  Complexation with dissolved organic matter and solubility control of heavy metals in a sandy soil.

Authors:  Liping Weng; Erwin J M Temminghoff; Stephen Lofts; Edward Tipping; Willem H Van Riemsdijk
Journal:  Environ Sci Technol       Date:  2002-11-15       Impact factor: 9.028

9.  Kinetics of distribution and adipose tissue storage as a function of lipophilicity and chemical structure. II. Benzodiazepines.

Authors:  X Xie; S H Steiner; M H Bickel
Journal:  Drug Metab Dispos       Date:  1991 Jan-Feb       Impact factor: 3.922

Review 10.  Physicochemical profiling (solubility, permeability and charge state).

Authors:  A Avdeef
Journal:  Curr Top Med Chem       Date:  2001-09       Impact factor: 3.295

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