Literature DB >> 24116546

Natural triple excitations in local coupled cluster calculations with pair natural orbitals.

Christoph Riplinger1, Barbara Sandhoefer, Andreas Hansen, Frank Neese.   

Abstract

In this work, the extension of the previously developed domain based local pair-natural orbital (DLPNO) based singles- and doubles coupled cluster (DLPNO-CCSD) method to perturbatively include connected triple excitations is reported. The development is based on the concept of triples-natural orbitals that span the joint space of the three pair natural orbital (PNO) spaces of the three electron pairs that are involved in the calculation of a given triple-excitation contribution. The truncation error is very smooth and can be significantly reduced through extrapolation to the zero threshold. However, the extrapolation procedure does not improve relative energies. The overall computational effort of the method is asymptotically linear with the system size O(N). Actual linear scaling has been confirmed in test calculations on alkane chains. The accuracy of the DLPNO-CCSD(T) approximation relative to semicanonical CCSD(T0) is comparable to the previously developed DLPNO-CCSD method relative to canonical CCSD. Relative energies are predicted with an average error of approximately 0.5 kcal∕mol for a challenging test set of medium sized organic molecules. The triples correction typically adds 30%-50% to the overall computation time. Thus, very large systems can be treated on the basis of the current implementation. In addition to the linear C150H302 (452 atoms, >8800 basis functions) we demonstrate the first CCSD(T) level calculation on an entire protein, Crambin with 644 atoms, and more than 6400 basis functions.

Entities:  

Year:  2013        PMID: 24116546     DOI: 10.1063/1.4821834

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  122 in total

1.  Efficient Estimation of Formation Enthalpies for Closed-Shell Organic Compounds with Local Coupled-Cluster Methods.

Authors:  Eugene Paulechka; Andrei Kazakov
Journal:  J Chem Theory Comput       Date:  2018-10-05       Impact factor: 6.006

2.  Reaction Mechanism, Origins of Enantioselectivity, and Reactivity Trends in Asymmetric Allylic Alkylation: A Comprehensive Quantum Mechanics Investigation of a C(sp3)-C(sp3) Cross-Coupling.

Authors:  Alexander Q Cusumano; Brian M Stoltz; William A Goddard
Journal:  J Am Chem Soc       Date:  2020-07-30       Impact factor: 15.419

3.  Hydrogen-Bond-Dependent Conformational Switching: A Computational Challenge from Experimental Thermochemistry.

Authors:  James Luccarelli; Robert S Paton
Journal:  J Org Chem       Date:  2019-01-09       Impact factor: 4.354

4.  Optimization of the linear-scaling local natural orbital CCSD(T) method: Redundancy-free triples correction using Laplace transform.

Authors:  Péter R Nagy; Mihály Kállay
Journal:  J Chem Phys       Date:  2017-06-07       Impact factor: 3.488

5.  The BioFragment Database (BFDb): An open-data platform for computational chemistry analysis of noncovalent interactions.

Authors:  Lori A Burns; John C Faver; Zheng Zheng; Michael S Marshall; Daniel G A Smith; Kenno Vanommeslaeghe; Alexander D MacKerell; Kenneth M Merz; C David Sherrill
Journal:  J Chem Phys       Date:  2017-10-28       Impact factor: 3.488

6.  SAMPL6 logP challenge: machine learning and quantum mechanical approaches.

Authors:  Prajay Patel; David M Kuntz; Michael R Jones; Bernard R Brooks; Angela K Wilson
Journal:  J Comput Aided Mol Des       Date:  2020-01-30       Impact factor: 3.686

7.  Multiple Stable Isoprene-Ozone Complexes Reveal Complex Entrance Channel Dynamics in the Isoprene + Ozone Reaction.

Authors:  Manoj Kumar; James Shee; Benjamin Rudshteyn; David R Reichman; Richard A Friesner; Charles E Miller; Joseph S Francisco
Journal:  J Am Chem Soc       Date:  2020-06-05       Impact factor: 15.419

8.  Photocatalyzed Diastereoselective Isomerization of Cinnamyl Chlorides to Cyclopropanes.

Authors:  Bin Xu; Ludovic Troian-Gautier; Ryan Dykstra; Robert T Martin; Osvaldo Gutierrez; Uttam K Tambar
Journal:  J Am Chem Soc       Date:  2020-03-19       Impact factor: 15.419

9.  Analytical Energy Gradients for the Cluster-in-Molecule MP2 Method and Its Application to Geometry Optimizations of Large Systems.

Authors:  Zhigang Ni; Yuqi Wang; Wei Li; Peter Pulay; Shuhua Li
Journal:  J Chem Theory Comput       Date:  2019-05-31       Impact factor: 6.006

Review 10.  Overview of the SAMPL5 host-guest challenge: Are we doing better?

Authors:  Jian Yin; Niel M Henriksen; David R Slochower; Michael R Shirts; Michael W Chiu; David L Mobley; Michael K Gilson
Journal:  J Comput Aided Mol Des       Date:  2016-09-22       Impact factor: 3.686

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