Literature DB >> 23896956

The X-C···Y (X = O/F, Y = O/S/F/Cl/Br/N/P) 'carbon bond' and hydrophobic interactions.

Devendra Mani1, E Arunan.   

Abstract

While the tetrahedral face of methane has an electron rich centre and can act as a hydrogen bond acceptor, substitution of one of its hydrogens with some electron withdrawing group (such as -F/OH) can make the opposite face electron deficient. Electrostatic potential calculations confirm this and high level quantum calculations show interactions between the positive face of methanol/methyl fluoride and electron rich centers of other molecules such as H2O. Analysis of the wave functions of atoms in molecules shows the presence of an unusual C···Y interaction, which could be called 'carbon bonding'. NBO analysis and vibrational frequency shifts confirm the presence of this interaction. Given the properties of alkyl groups bonded to electronegative elements in biological molecules, such interactions could play a significant role, which is yet to be recognized. This and similar interactions could give an enthalpic contribution to what is called the 'hydrophobic interactions'.

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Year:  2013        PMID: 23896956     DOI: 10.1039/c3cp51658j

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  26 in total

1.  Theoretical study of the cooperative effects between the triel bond and the pnicogen bond in BF3···NCXH2···Y (X = P, As, Sb; Y = H2O, NH3) complexes.

Authors:  Ming-Xiu Liu; Hong-Ying Zhuo; Qing-Zhong Li; Wen-Zuo Li; Jian-Bo Cheng
Journal:  J Mol Model       Date:  2015-12-16       Impact factor: 1.810

2.  On the reciprocal relationship between σ-hole bonding and (anti)aromaticity gain in ketocyclopolyenes.

Authors:  Hari Ram Paudel; Lucas José Karas; Judy I-Chia Wu
Journal:  Org Biomol Chem       Date:  2020-07-15       Impact factor: 3.876

3.  DFT study of CO2 and H2O co-adsorption on carbon models of coal surface.

Authors:  Zhengyang Gao; Yi Ding
Journal:  J Mol Model       Date:  2017-05-12       Impact factor: 1.810

4.  Competition between tetrel bond and pnicogen bond in complexes of TX3-ZX2 and NH3.

Authors:  Yan Li; Zhefeng Xu
Journal:  J Mol Model       Date:  2018-08-20       Impact factor: 1.810

5.  Competition between π-hole interaction and hydrogen bond in the complexes of F2XO (X = C and Si) and HCN.

Authors:  Xin Guo; Lishui Cao; Qingzhong Li; Wenzuo Li; Jianbo Cheng
Journal:  J Mol Model       Date:  2014-10-23       Impact factor: 1.810

6.  Construction of a molecular structure model of mild-oxidized Chinese lignite using Gaussian09 based on data from FTIR, solid state 13C-NMR.

Authors:  Youzhi Lu; Li Feng; Xiangang Jiang; Yingya Zhao; Guangyao Zhao; Chuanzhou Yuan
Journal:  J Mol Model       Date:  2018-05-25       Impact factor: 1.810

7.  Exploring σ-hole bonding in XH3Si···HMY (X=H, F, CN; M=Be, Mg; Y=H, F, CH3) complexes: a "tetrel-hydride" interaction.

Authors:  Mehdi D Esrafili; Fariba Mohammadian-Sabet
Journal:  J Mol Model       Date:  2015-02-25       Impact factor: 1.810

8.  Modulating the strength of tetrel bonding through beryllium bonding.

Authors:  Mingxiu Liu; Li Yang; Qingzhong Li; Wenzuo Li; Jianbo Cheng; Bo Xiao; Xuefang Yu
Journal:  J Mol Model       Date:  2016-07-27       Impact factor: 1.810

9.  Substituent effects on the properties of the hemi-bonded complexes (XH2P···NH2Y)(+) (X, Y=H, F, Cl, Br, NH2, CH3, OH).

Authors:  Li Fei Ji; An Yong Li; Zhuo Zhe Li; Zhi Xing Ge
Journal:  J Mol Model       Date:  2015-12-07       Impact factor: 1.810

Review 10.  The Halogen Bond.

Authors:  Gabriella Cavallo; Pierangelo Metrangolo; Roberto Milani; Tullio Pilati; Arri Priimagi; Giuseppe Resnati; Giancarlo Terraneo
Journal:  Chem Rev       Date:  2016-01-26       Impact factor: 60.622

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