Literature DB >> 22968690

Trends in σ-hole strengths and interactions of F3MX molecules (M = C, Si, Ge and X = F, Cl, Br, I).

Ashwini Bundhun1, Ponnadurai Ramasami, Jane S Murray, Peter Politzer.   

Abstract

It is well-established that many covalently-bonded atoms of Groups IV-VII have directionally-specific regions of positive electrostatic potential (σ-holes) through which they can interact with negative sites. In the case of Group VII, this is called "halogen bonding." We have studied two series of molecules: the F3MX and, for comparison, the H3MX (M = C, Si and Ge; X = F, Cl, Br and I). Our objective was to determine how the interplay between M and X in each molecule affects the σ-holes of both, and consequently their interactions with the nitrogen lone pair of HCN. We find that the relative electronegativities of M and X are not sufficient to explain their effects upon each other's σ-holes; consideration of charge capacity/polarizability (and perhaps other factors) also appears to be necessary. However the results do support the description of normal σ-hole interactions as being largely electrostatically-driven.

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Year:  2012        PMID: 22968690     DOI: 10.1007/s00894-012-1571-4

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  19 in total

1.  Quantitative analysis of molecular surfaces: areas, volumes, electrostatic potentials and average local ionization energies.

Authors:  Felipe A Bulat; Alejandro Toro-Labbé; Tore Brinck; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2010-04-02       Impact factor: 1.810

2.  Molecular surface electrostatic potentials as guides to Si-O-N angle contraction: tunable σ-holes.

Authors:  Jane S Murray; Monica C Concha; Peter Politzer
Journal:  J Mol Model       Date:  2010-09-26       Impact factor: 1.810

3.  Sigma-hole bonding: molecules containing group VI atoms.

Authors:  Jane S Murray; Pat Lane; Timothy Clark; Peter Politzer
Journal:  J Mol Model       Date:  2007-07-24       Impact factor: 1.810

4.  Sigma-hole bonding between like atoms; a fallacy of atomic charges.

Authors:  Peter Politzer; Jane S Murray; Monica C Concha
Journal:  J Mol Model       Date:  2008-03-04       Impact factor: 1.810

5.  Σ-holes, π-holes and electrostatically-driven interactions.

Authors:  Jane S Murray; Pat Lane; Timothy Clark; Kevin E Riley; Peter Politzer
Journal:  J Mol Model       Date:  2011-05-04       Impact factor: 1.810

6.  Halogen bond tunability I: the effects of aromatic fluorine substitution on the strengths of halogen-bonding interactions involving chlorine, bromine, and iodine.

Authors:  Kevin E Riley; Jane S Murray; Jindřich Fanfrlík; Jan Rezáč; Ricardo J Solá; Monica C Concha; Felix M Ramos; Peter Politzer
Journal:  J Mol Model       Date:  2011-03-04       Impact factor: 1.810

7.  Halogen bonding: the sigma-hole. Proceedings of "Modeling interactions in biomolecules II", Prague, September 5th-9th, 2005.

Authors:  Timothy Clark; Matthias Hennemann; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2006-08-23       Impact factor: 1.810

8.  Halogen bonds in biological molecules.

Authors:  Pascal Auffinger; Franklin A Hays; Eric Westhof; P Shing Ho
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-19       Impact factor: 11.205

9.  Expansion of the sigma-hole concept.

Authors:  Jane S Murray; Pat Lane; Peter Politzer
Journal:  J Mol Model       Date:  2008-12-11       Impact factor: 1.810

10.  Br···O Complexes as Probes of Factors Affecting Halogen Bonding: Interactions of Bromobenzenes and Bromopyrimidines with Acetone.

Authors:  Kevin E Riley; Jane S Murray; Peter Politzer; Monica C Concha; Pavel Hobza
Journal:  J Chem Theory Comput       Date:  2008-12-18       Impact factor: 6.006

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  23 in total

1.  Hydrogen bonds and other interactions as a response to protect doublet/octet electron structure.

Authors:  Sławomir J Grabowski
Journal:  J Mol Model       Date:  2018-01-08       Impact factor: 1.810

2.  Revealing substitution effects on the strength and nature of halogen-hydride interactions: a theoretical study.

Authors:  Mehdi D Esrafili; Mohammad Solimannejad
Journal:  J Mol Model       Date:  2013-06-23       Impact factor: 1.810

3.  Parametrization of halogen bonds in the CHARMM general force field: Improved treatment of ligand-protein interactions.

Authors:  Ignacio Soteras Gutiérrez; Fang-Yu Lin; Kenno Vanommeslaeghe; Justin A Lemkul; Kira A Armacost; Charles L Brooks; Alexander D MacKerell
Journal:  Bioorg Med Chem       Date:  2016-06-18       Impact factor: 3.641

4.  Chalcogen-bonded complexes. Selenium-bound adducts of NH3, H2O, PH3, and H2S with OCSe, SCSe, and CSe2.

Authors:  Ponnadurai Ramasami; Thomas A Ford
Journal:  J Mol Model       Date:  2015-02-03       Impact factor: 1.810

5.  Comparison of halogen bonds in M-X⋯N contacts (M = C, Si, Ge and X = Cl, Br).

Authors:  Hossein Jalali Jahromi; Kiamars Eskandari; Azam Alizadeh
Journal:  J Mol Model       Date:  2015-04-11       Impact factor: 1.810

6.  Theoretical study of noncovalent interactions in XCN···YO2H (X = F, Cl, Br, I; Y = P, As, Sb) complexes.

Authors:  Qiang Zhao
Journal:  J Mol Model       Date:  2017-05-12       Impact factor: 1.810

7.  Quantum-mechanical investigation of tetrel bond characteristics based on the point-of-charge (PoC) approach.

Authors:  Mahmoud A A Ibrahim; Nayra A M Moussa; Mohamed E A Safy
Journal:  J Mol Model       Date:  2018-07-27       Impact factor: 1.810

8.  Theoretical study of the complementarity in halogen-bonded complexes involving nitrogen and halogen as negative sites.

Authors:  Mehdi D Esrafili; Mahshad Vakili; Mohammad Solimannejad
Journal:  J Mol Model       Date:  2014-02-13       Impact factor: 1.810

9.  Insights into the strength and nature of carbene···halogen bond interactions: a theoretical perspective.

Authors:  Mehdi D Esrafili; Nafiseh Mohammadirad
Journal:  J Mol Model       Date:  2013-03-02       Impact factor: 1.810

10.  Modulating the strength of tetrel bonding through beryllium bonding.

Authors:  Mingxiu Liu; Li Yang; Qingzhong Li; Wenzuo Li; Jianbo Cheng; Bo Xiao; Xuefang Yu
Journal:  J Mol Model       Date:  2016-07-27       Impact factor: 1.810

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