Literature DB >> 23677257

Vibrational self-consistent field calculations for spectroscopy of biological molecules: new algorithmic developments and applications.

Tapta Kanchan Roy1, R Benny Gerber.   

Abstract

This review describes the vibrational self-consistent field (VSCF) method and its other variants for computing anharmonic vibrational spectroscopy of biological molecules. The superiority and limitations of this algorithm are discussed with examples. The spectroscopic accuracy of the VSCF method is compared with experimental results and other available state-of-the-art algorithms for various biologically important systems. For large biological molecules with many vibrational modes, the scaling of computational effort is investigated. The accuracy of the vibrational spectra of biological molecules using the VSCF approach for different electronic structure methods is also assessed. Finally, a few open problems and challenges in this field are discussed.

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Year:  2013        PMID: 23677257     DOI: 10.1039/c3cp50739d

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  19 in total

1.  Fast and accurate hybrid QM//MM approach for computing anharmonic corrections to vibrational frequencies.

Authors:  Loïc Barnes; Baptiste Schindler; Isabelle Compagnon; Abdul-Rahman Allouche
Journal:  J Mol Model       Date:  2016-11-02       Impact factor: 1.810

Review 2.  Protons and Hydroxide Ions in Aqueous Systems.

Authors:  Noam Agmon; Huib J Bakker; R Kramer Campen; Richard H Henchman; Peter Pohl; Sylvie Roke; Martin Thämer; Ali Hassanali
Journal:  Chem Rev       Date:  2016-06-17       Impact factor: 60.622

3.  Anharmonic vibrational spectroscopy of polycyclic aromatic hydrocarbons (PAHs).

Authors:  Giacomo Mulas; Cyril Falvo; Patrick Cassam-Chenaï; Christine Joblin
Journal:  J Chem Phys       Date:  2018-10-14       Impact factor: 3.488

4.  CC/DFT Route toward Accurate Structures and Spectroscopic Features for Observed and Elusive Conformers of Flexible Molecules: Pyruvic Acid as a Case Study.

Authors:  Vincenzo Barone; Malgorzata Biczysko; Julien Bloino; Paola Cimino; Emanuele Penocchio; Cristina Puzzarini
Journal:  J Chem Theory Comput       Date:  2015-08-07       Impact factor: 6.006

5.  Vibrational heat-bath configuration interaction.

Authors:  Jonathan H Fetherolf; Timothy C Berkelbach
Journal:  J Chem Phys       Date:  2021-02-21       Impact factor: 3.488

6.  Chiral Inversion of Amino Acids in Antiparallel β-Sheets at Interfaces Probed by Vibrational Sum Frequency Generation Spectroscopy.

Authors:  Ethan A Perets; Pablo E Videla; Elsa C Y Yan; Victor S Batista
Journal:  J Phys Chem B       Date:  2019-06-27       Impact factor: 3.466

7.  The Virtual Multifrequency Spectrometer: a new paradigm for spectroscopy.

Authors:  Vincenzo Barone
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2016 Mar/Apr

8.  Anharmonic Effects on Vibrational Spectra Intensities: Infrared, Raman, Vibrational Circular Dichroism, and Raman Optical Activity.

Authors:  Julien Bloino; Malgorzata Biczysko; Vincenzo Barone
Journal:  J Phys Chem A       Date:  2015-12-01       Impact factor: 2.781

9.  Fully anharmonic IR and Raman spectra of medium-size molecular systems: accuracy and interpretation.

Authors:  Vincenzo Barone; Malgorzata Biczysko; Julien Bloino
Journal:  Phys Chem Chem Phys       Date:  2014-02-07       Impact factor: 3.676

10.  Dispersion corrected DFT approaches for anharmonic vibrational frequency calculations: nucleobases and their dimers.

Authors:  Teresa Fornaro; Malgorzata Biczysko; Susanna Monti; Vincenzo Barone
Journal:  Phys Chem Chem Phys       Date:  2014-02-17       Impact factor: 3.676

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