| Literature DB >> 24280700 |
Fernando Lizcano, Jeison Garcia.
Abstract
The development of cancer involves an immense number of factors at the molecular level. These factors are associated principally with alterations in the epigenetic mechanisms that regulate gene expression profiles. Studying the effects of chromatin structure alterations, which are caused by the addition/removal of functional groups to specific histone residues, are of great interest as a promising way to identify markers for cancer diagnosis, classify the disease and determine its prognosis, and these markers could be potential targets for the treatment of this disease in its different forms. This manuscript presents the current point of view regarding members of the recently described family of proteins that exhibit histone demethylase activity; histone demethylases are genetic regulators that play a fundamental role in both the activation and repression of genes and whose expression has been observed to increase in many types of cancer. Some fundamental aspects of their association with the development of cancer and their relevance as potential targets for the development of new therapeutic strategies at the epigenetic level are discussed in the following manuscript.Entities:
Year: 2012 PMID: 24280700 PMCID: PMC3816642 DOI: 10.3390/ph5090963
Source DB: PubMed Journal: Pharmaceuticals (Basel) ISSN: 1424-8247
Figure 1Post-translational modifications of histone proteins H1, H2A, H2B, H3 and H4 involved in epigenetic regulation. Target amino acids for isomerization (), phosphorylation (), ubiquitination (), acetylation () or methylation () are shown as one-letter code, together with the different enzymes able to add (in blue) each functional group. The histone demethylases are shown in red, besides the lysine residues susceptible to their specific enzymatic activity.
Figure 2Methylation patterns of proteins at the lysine and arginine residues. In the histones, it is possible to find (a) mono-, di- and trimethylated forms of lysine, as well as (b) monomethylated and dimethylated forms for arginine.
Figure 3Pattern of methylation-demethylation associated with different types of neoplasia. The main alterations at the histone proteins H3 and H4 level are illustrated, highlighting the cancers associated with increase (red) or reduction (green) of methylation levels, facing normal cells [39].
Figure 4Mechanisms of histone demethylation [40]. (a) The proteins having an amine-oxidase FAD-dependent activity require at least one atom of hydrogen on the lysine’s amine group, implying these proteins’ activity on the mono- and dimethylated forms of this amino acid. On the other hand, those proteins with oxygenase activity (b) are able to add a hydroxyl group to the methyl group, in a Fe2+- and α-ketoglutarate dependent way, letting them act on the quaternary form of the methylated amine.
Histone demethylases and their association with cancer development.
| Histone demethylase | Genebank Acc. Number | Alteration | Associated cancer | References |
|---|---|---|---|---|
| LSD-1/KDM1A | NM_015013 | Over-expression | ER-negative breast, Prostate, Leukemia, Sarcomas, Lung, neuroblastoma | [ |
| Low expression | Hepatocellular, gastrointestinal, Hepatobiliary and metastatic breast carcinomas | [ | ||
| JARID1A/KDM5A | NM_001042603 | Over-expression | Gastric, Leukemia | [ |
| JARID1B/KDM5B | NM_006618 | Over-expression | Testicular, Ovaries, Breast, Prostate, leukemia | [ |
| JARID1C/KDM5C | NM_004187.3 NM_001146702.1 | Over-expression | Renal Carcinoma, Cervical | [ |
| JHDM1B/FBXL10/KDM2B | NM_032590 | Over-expression/Mutation | Lymphomas, Acute myeloid leukemia | [ |
| Low expression | Gliobastoma multiforme, brain | [ | ||
| JMJD2C/KDM4C | NM_015061; NM_001146694; NM_001146695; NM_001146696 | Over-expression | MALT and Hodgkin Lymphomas, myeloid leukemia, Breast, gliobastoma multiforme, prostate, desmoplasic meduloblastoma, sarcomatoid and esophageal carcinoma. | [ |
| JMJD2A/KDM4A | NM_014663 | Over-expression | Kaposi Sarcoma, Prostate, Breast, Colon, Bladder. | [ |
| JMJD3/KDM6B | NM_001080424 | Over-expression | Colon, Lymphomas | [ |
| UTX/KDM6A | NM_021140 | Mutation/Low expression | Advanced forms of cancer, Multiple mieloma, Leukemia, renal and bladder carcinomas. | [ |
Figure 5Inhibitors of histone demethylation. Specific inhibitors for LSD1 can be designed according to the similarity of this demethylase’s substrates with the FAD-dependent polyamine oxidases targets (a, top frame), as can be observed for spermidin-like inhibitors, octamines (n = 3) or decamines (n = 4). Another pathway for designing amine oxidases’ inhibitors involves their mechanism of activity, targeting FAD by radical oxidation reactions with “suicide” inhibitors containing a phenylcyclopropylamine core (a, bottom frame). Histone demethylases with oxygenase activity can be inhibited by using α-ketoglutarate analogues, as these could be able to bind to Fe2+. Some of the most promising epidrugs includes some derivatives of N-oxalyl glucose and N-oxalyl tyrosine, (b, top frame), in conjuction with the recent description of flavonoids and chatecols showing competitive and non-competitive inhibition, possibly associated with these natural product’s ability to bind iron (b, bottom frame).