Literature DB >> 22615382

H3K4 demethylation by Jarid1a and Jarid1b contributes to retinoblastoma-mediated gene silencing during cellular senescence.

Agustin Chicas1, Avnish Kapoor, Xiaowo Wang, Ozlem Aksoy, Adam G Evertts, Michael Q Zhang, Benjamin A Garcia, Emily Bernstein, Scott W Lowe.   

Abstract

Cellular senescence is a tumor-suppressive program that involves chromatin reorganization and specific changes in gene expression that trigger an irreversible cell-cycle arrest. Here we combine quantitative mass spectrometry, ChIP deep-sequencing, and functional studies to determine the role of histone modifications on chromatin structure and gene-expression alterations associated with senescence in primary human cells. We uncover distinct senescence-associated changes in histone-modification patterns consistent with a repressive chromatin environment and link the establishment of one of these patterns--loss of H3K4 methylation--to the retinoblastoma tumor suppressor and the H3K4 demethylases Jarid1a and Jarid1b. Our results show that Jarid1a/b-mediated H3K4 demethylation contributes to silencing of retinoblastoma target genes in senescent cells, suggesting a mechanism by which retinoblastoma triggers gene silencing. Therefore, we link the Jarid1a and Jarid1b demethylases to a tumor-suppressor network controlling cellular senescence.

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Year:  2012        PMID: 22615382      PMCID: PMC3384172          DOI: 10.1073/pnas.1119836109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

1.  DAVID: Database for Annotation, Visualization, and Integrated Discovery.

Authors:  Glynn Dennis; Brad T Sherman; Douglas A Hosack; Jun Yang; Wei Gao; H Clifford Lane; Richard A Lempicki
Journal:  Genome Biol       Date:  2003-04-03       Impact factor: 13.583

2.  Binding of pRB to the PHD protein RBP2 promotes cellular differentiation.

Authors:  Elizaveta V Benevolenskaya; Heather L Murray; Philip Branton; Richard A Young; William G Kaelin
Journal:  Mol Cell       Date:  2005-06-10       Impact factor: 17.970

3.  JARID1B is a histone H3 lysine 4 demethylase up-regulated in prostate cancer.

Authors:  Yang Xiang; Ziqi Zhu; Gang Han; Xiaolei Ye; Bo Xu; Zhouchun Peng; Yuanjun Ma; Yi Yu; Hanqing Lin; Adele Pin Chen; Charlie Degui Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-28       Impact factor: 11.205

4.  High-resolution profiling of histone methylations in the human genome.

Authors:  Artem Barski; Suresh Cuddapah; Kairong Cui; Tae-Young Roh; Dustin E Schones; Zhibin Wang; Gang Wei; Iouri Chepelev; Keji Zhao
Journal:  Cell       Date:  2007-05-18       Impact factor: 41.582

Review 5.  Cellular senescence: when bad things happen to good cells.

Authors:  Judith Campisi; Fabrizio d'Adda di Fagagna
Journal:  Nat Rev Mol Cell Biol       Date:  2007-09       Impact factor: 94.444

6.  Retinoblastoma protein recruits histone deacetylase to repress transcription.

Authors:  A Brehm; E A Miska; D J McCance; J L Reid; A J Bannister; T Kouzarides
Journal:  Nature       Date:  1998-02-05       Impact factor: 49.962

7.  Clearance of p16Ink4a-positive senescent cells delays ageing-associated disorders.

Authors:  Darren J Baker; Tobias Wijshake; Tamar Tchkonia; Nathan K LeBrasseur; Bennett G Childs; Bart van de Sluis; James L Kirkland; Jan M van Deursen
Journal:  Nature       Date:  2011-11-02       Impact factor: 49.962

8.  The retinoblastoma binding protein RBP2 is an H3K4 demethylase.

Authors:  Robert J Klose; Qin Yan; Zuzana Tothova; Kenichi Yamane; Hediye Erdjument-Bromage; Paul Tempst; D Gary Gilliland; Yi Zhang; William G Kaelin
Journal:  Cell       Date:  2007-02-22       Impact factor: 41.582

9.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-08       Impact factor: 11.205

10.  Rb-mediated heterochromatin formation and silencing of E2F target genes during cellular senescence.

Authors:  Masashi Narita; Sabrina Nũnez; Edith Heard; Masako Narita; Athena W Lin; Stephen A Hearn; David L Spector; Gregory J Hannon; Scott W Lowe
Journal:  Cell       Date:  2003-06-13       Impact factor: 41.582

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  78 in total

1.  JARID1B modulates lung cancer cell proliferation and invasion by regulating p53 expression.

Authors:  Xudong Shen; Zhixiang Zhuang; Yusong Zhang; Zhigang Chen; Liqin Shen; Wangyang Pu; Lei Chen; Zhonghua Xu
Journal:  Tumour Biol       Date:  2015-04-16

2.  Histone demethylase KDM5A is transactivated by the transcription factor C/EBPβ and promotes preadipocyte differentiation by inhibiting Wnt/β-catenin signaling.

Authors:  Liang Guo; Ying-Ying Guo; Bai-Yu Li; Wan-Qiu Peng; Qi-Qun Tang
Journal:  J Biol Chem       Date:  2019-05-06       Impact factor: 5.157

Review 3.  JARID1 Histone Demethylases: Emerging Targets in Cancer.

Authors:  Kayla M Harmeyer; Nicole D Facompre; Meenhard Herlyn; Devraj Basu
Journal:  Trends Cancer       Date:  2017-09-12

4.  Polycomb repressive complex 2 epigenomic signature defines age-associated hypermethylation and gene expression changes.

Authors:  Mikhail G Dozmorov
Journal:  Epigenetics       Date:  2015-04-16       Impact factor: 4.528

Review 5.  Atypical fetal development: Fetal alcohol syndrome, nutritional deprivation, teratogens, and risk for neurodevelopmental disorders and psychopathology.

Authors:  Michael K Georgieff; Phu V Tran; Erik S Carlson
Journal:  Dev Psychopathol       Date:  2018-08

Review 6.  Solid tumours hijack the histone variant network.

Authors:  Flávia G Ghiraldini; Dan Filipescu; Emily Bernstein
Journal:  Nat Rev Cancer       Date:  2021-02-10       Impact factor: 60.716

7.  The atypical E2F family member E2F7 couples the p53 and RB pathways during cellular senescence.

Authors:  Ozlem Aksoy; Agustin Chicas; Tianying Zeng; Zhen Zhao; Mila McCurrach; Xiaowo Wang; Scott W Lowe
Journal:  Genes Dev       Date:  2012-07-15       Impact factor: 11.361

8.  Physical and functional interactions between the histone H3K4 demethylase KDM5A and the nucleosome remodeling and deacetylase (NuRD) complex.

Authors:  Gohei Nishibuchi; Yukimasa Shibata; Tomohiro Hayakawa; Noriyo Hayakawa; Yasuko Ohtani; Kaori Sinmyozu; Hideaki Tagami; Jun-ichi Nakayama
Journal:  J Biol Chem       Date:  2014-09-04       Impact factor: 5.157

9.  Tumor suppressor p16INK4A is necessary for survival of cervical carcinoma cell lines.

Authors:  Margaret E McLaughlin-Drubin; Donglim Park; Karl Munger
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-17       Impact factor: 11.205

10.  KDM5B Is Essential for the Hyperactivation of PI3K/AKT Signaling in Prostate Tumorigenesis.

Authors:  Guoliang Li; Thanigaivelan Kanagasabai; Wenfu Lu; Mike R Zou; Shang-Min Zhang; Sherly I Celada; Michael G Izban; Qi Liu; Tao Lu; Billy R Ballard; Xinchun Zhou; Samuel E Adunyah; Robert J Matusik; Qin Yan; Zhenbang Chen
Journal:  Cancer Res       Date:  2020-08-31       Impact factor: 12.701

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