Literature DB >> 20970991

Structural insights into histone lysine demethylation.

Haifeng Hou1, Hongtao Yu.   

Abstract

Posttranslational modifications of histone tails are crucial epigenetic marks that regulate diverse cellular processes. Histone lysine methylation activates or represses transcription, depending on the site and degree of these modifications. Two classes of histone lysine demethylases remove histone methylation. Lysine demethylase 1 (KDM1, also known as LSD1) is a flavin adenine dinucleotide (FAD)-containing enzyme that removes mono-/di-methylation. The Jumonji C-terminal domain (JmjC) family of histone demethylases uses Fe(2+) and α-ketoglutarate as cofactors to remove all methylation states. Structural studies have provided insights into the overall architecture, the catalytic mechanism, and the substrate specificity of histone demethylases. Here, we review these exciting advances in the structure biology of histone demethylases and discuss the general principles applicable to other histone-modifying enzymes.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20970991      PMCID: PMC3010374          DOI: 10.1016/j.sbi.2010.09.006

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  52 in total

1.  Structural basis of LSD1-CoREST selectivity in histone H3 recognition.

Authors:  Federico Forneris; Claudia Binda; Antonio Adamo; Elena Battaglioli; Andrea Mattevi
Journal:  J Biol Chem       Date:  2007-05-30       Impact factor: 5.157

2.  Histone methylation-dependent mechanisms impose ligand dependency for gene activation by nuclear receptors.

Authors:  Ivan Garcia-Bassets; Young-Soo Kwon; Francesca Telese; Gratien G Prefontaine; Kasey R Hutt; Christine S Cheng; Bong-Gun Ju; Kenneth A Ohgi; Jianxun Wang; Laure Escoubet-Lozach; David W Rose; Christopher K Glass; Xiang-Dong Fu; Michael G Rosenfeld
Journal:  Cell       Date:  2007-02-09       Impact factor: 41.582

3.  Opposing LSD1 complexes function in developmental gene activation and repression programmes.

Authors:  Jianxun Wang; Kathleen Scully; Xiaoyan Zhu; Ling Cai; Jie Zhang; Gratien G Prefontaine; Anna Krones; Kenneth A Ohgi; Ping Zhu; Ivan Garcia-Bassets; Forrest Liu; Havilah Taylor; Jean Lozach; Friederike L Jayes; Kenneth S Korach; Christopher K Glass; Xiang-Dong Fu; Michael G Rosenfeld
Journal:  Nature       Date:  2007-03-28       Impact factor: 49.962

4.  Structural basis of the recognition of a methylated histone tail by JMJD2A.

Authors:  Zhongzhou Chen; Jianye Zang; John Kappler; Xia Hong; Frances Crawford; Qin Wang; Fei Lan; Chengyu Jiang; Johnathan Whetstine; Shaodong Dai; Kirk Hansen; Yang Shi; Gongyi Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-13       Impact factor: 11.205

5.  Crystal structure of human histone lysine-specific demethylase 1 (LSD1).

Authors:  Yong Chen; Yuting Yang; Feng Wang; Ke Wan; Kenichi Yamane; Yi Zhang; Ming Lei
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-06       Impact factor: 11.205

6.  Structural basis for the inhibition of the LSD1 histone demethylase by the antidepressant trans-2-phenylcyclopropylamine.

Authors:  Maojun Yang; Jeffrey C Culhane; Lawrence M Szewczuk; Pegah Jalili; Haydn L Ball; Mischa Machius; Philip A Cole; Hongtao Yu
Journal:  Biochemistry       Date:  2007-06-15       Impact factor: 3.162

7.  Mechanistic analysis of a suicide inactivator of histone demethylase LSD1.

Authors:  Lawrence M Szewczuk; Jeffrey C Culhane; Maojun Yang; Ananya Majumdar; Hongtao Yu; Philip A Cole
Journal:  Biochemistry       Date:  2007-05-19       Impact factor: 3.162

8.  Crystal structures of histone demethylase JMJD2A reveal basis for substrate specificity.

Authors:  Stanley S Ng; Kathryn L Kavanagh; Michael A McDonough; Danica Butler; Ewa S Pilka; Benoit M R Lienard; James E Bray; Pavel Savitsky; Opher Gileadi; Frank von Delft; Nathan R Rose; John Offer; Johanna C Scheinost; Tomasz Borowski; Michael Sundstrom; Christopher J Schofield; Udo Oppermann
Journal:  Nature       Date:  2007-06-24       Impact factor: 49.962

9.  Specificity and mechanism of JMJD2A, a trimethyllysine-specific histone demethylase.

Authors:  Jean-François Couture; Evys Collazo; Patricia A Ortiz-Tello; Joseph S Brunzelle; Raymond C Trievel
Journal:  Nat Struct Mol Biol       Date:  2007-06-24       Impact factor: 15.369

10.  Structural basis of histone demethylation by LSD1 revealed by suicide inactivation.

Authors:  Maojun Yang; Jeffrey C Culhane; Lawrence M Szewczuk; Christian B Gocke; Chad A Brautigam; Diana R Tomchick; Mischa Machius; Philip A Cole; Hongtao Yu
Journal:  Nat Struct Mol Biol       Date:  2007-05-27       Impact factor: 15.369

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  75 in total

1.  Evolution and conservation of JmjC domain proteins in the green lineage.

Authors:  Yong Huang; Donghong Chen; Chunlin Liu; Wenhui Shen; Ying Ruan
Journal:  Mol Genet Genomics       Date:  2015-07-08       Impact factor: 3.291

2.  Structural basis for histone H3 Lys 27 demethylation by UTX/KDM6A.

Authors:  Toru Sengoku; Shigeyuki Yokoyama
Journal:  Genes Dev       Date:  2011-10-14       Impact factor: 11.361

3.  Proteome-wide measurement of protein half-lives and translation rates in vasopressin-sensitive collecting duct cells.

Authors:  Pablo C Sandoval; Dane H Slentz; Trairak Pisitkun; Fahad Saeed; Jason D Hoffert; Mark A Knepper
Journal:  J Am Soc Nephrol       Date:  2013-09-12       Impact factor: 10.121

Review 4.  The critical role of histone lysine demethylase KDM2B in cancer.

Authors:  Meina Yan; Xinxin Yang; Hui Wang; Qixiang Shao
Journal:  Am J Transl Res       Date:  2018-08-15       Impact factor: 4.060

Review 5.  Chemical biology of protein arginine modifications in epigenetic regulation.

Authors:  Jakob Fuhrmann; Kathleen W Clancy; Paul R Thompson
Journal:  Chem Rev       Date:  2015-05-13       Impact factor: 60.622

Review 6.  KDM1 class flavin-dependent protein lysine demethylases.

Authors:  Jonathan M Burg; Jennifer E Link; Brittany S Morgan; Frederick J Heller; Amanda E Hargrove; Dewey G McCafferty
Journal:  Biopolymers       Date:  2015-07       Impact factor: 2.505

7.  Little imaginal discs, a Trithorax group member, is a constituent of nuclear matrix of Drosophila melanogaster embryos.

Authors:  Parul Varma; Rakesh K Mishra
Journal:  J Biosci       Date:  2018-09       Impact factor: 1.826

Review 8.  The role of 5-hydroxymethylcytosine in human cancer.

Authors:  Gerd P Pfeifer; Wenying Xiong; Maria A Hahn; Seung-Gi Jin
Journal:  Cell Tissue Res       Date:  2014-05-10       Impact factor: 5.249

9.  Epigenetic modification of Sod2 in the development of diabetic retinopathy and in the metabolic memory: role of histone methylation.

Authors:  Qing Zhong; Renu A Kowluru
Journal:  Invest Ophthalmol Vis Sci       Date:  2013-01-14       Impact factor: 4.799

Review 10.  Metabolic Signaling to Chromatin.

Authors:  Shelley L Berger; Paolo Sassone-Corsi
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-11-01       Impact factor: 10.005

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