Literature DB >> 21828268

Polycomb eviction as a new distant enhancer function.

Douglas Vernimmen1, Magnus D Lynch, Marco De Gobbi, David Garrick, Jacqueline A Sharpe, Jacqueline A Sloane-Stanley, Andrew J H Smith, Douglas R Higgs.   

Abstract

Remote distal enhancers may be located tens or thousands of kilobases away from their promoters. How they control gene expression is still poorly understood. Here, we analyze the influence of a remote enhancer on the balance between repression (Polycomb-PcG) and activation (Trithorax-TrxG) of a developmentally regulated gene associated with a CpG island. We reveal its essential, nonredundant role in clearing the PcG complex and H3K27me3 from the CpG island. In the absence of the enhancer, the H3K27me3 demethylase (JMJD3) is not recruited to the CpG island. We propose a new role of long-range regulatory elements in removing repressive PcG complexes.

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Year:  2011        PMID: 21828268      PMCID: PMC3182025          DOI: 10.1101/gad.16985411

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  19 in total

1.  Globin gene activation during haemopoiesis is driven by protein complexes nucleated by GATA-1 and GATA-2.

Authors:  Eduardo Anguita; Jim Hughes; Clare Heyworth; Gerd A Blobel; William G Wood; Douglas R Higgs
Journal:  EMBO J       Date:  2004-06-24       Impact factor: 11.598

Review 2.  Polycomb group proteins set the stage for early lineage commitment.

Authors:  Lauren E Surface; Seraphim R Thornton; Laurie A Boyer
Journal:  Cell Stem Cell       Date:  2010-09-03       Impact factor: 24.633

Review 3.  Long-range regulation of alpha-globin gene expression.

Authors:  Douglas R Higgs; Douglas Vernimmen; Bill Wood
Journal:  Adv Genet       Date:  2008       Impact factor: 1.944

4.  The role of the polycomb complex in silencing alpha-globin gene expression in nonerythroid cells.

Authors:  David Garrick; Marco De Gobbi; Vasiliki Samara; Michelle Rugless; Michelle Holland; Helena Ayyub; Karen Lower; Jackie Sloane-Stanley; Nicki Gray; Christoph Koch; Ian Dunham; Douglas R Higgs
Journal:  Blood       Date:  2008-08-08       Impact factor: 22.113

5.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

6.  Polycomb group protein complexes exchange rapidly in living Drosophila.

Authors:  Gabriella Ficz; Rainer Heintzmann; Donna J Arndt-Jovin
Journal:  Development       Date:  2005-08-03       Impact factor: 6.868

7.  Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors.

Authors:  Fabio Mohn; Michael Weber; Michael Rebhan; Tim C Roloff; Jens Richter; Michael B Stadler; Miriam Bibel; Dirk Schübeler
Journal:  Mol Cell       Date:  2008-05-29       Impact factor: 17.970

8.  CpG islands influence chromatin structure via the CpG-binding protein Cfp1.

Authors:  John P Thomson; Peter J Skene; Jim Selfridge; Thomas Clouaire; Jacky Guy; Shaun Webb; Alastair R W Kerr; Aimée Deaton; Rob Andrews; Keith D James; Daniel J Turner; Robert Illingworth; Adrian Bird
Journal:  Nature       Date:  2010-04-15       Impact factor: 49.962

9.  Manipulating the mouse genome to engineer precise functional syntenic replacements with human sequence.

Authors:  Helen A C Wallace; Fatima Marques-Kranc; Melville Richardson; Francisco Luna-Crespo; Jackie A Sharpe; Jim Hughes; William G Wood; Douglas R Higgs; Andrew J H Smith
Journal:  Cell       Date:  2007-01-12       Impact factor: 41.582

10.  GC-rich sequence elements recruit PRC2 in mammalian ES cells.

Authors:  Eric M Mendenhall; Richard P Koche; Thanh Truong; Vicky W Zhou; Biju Issac; Andrew S Chi; Manching Ku; Bradley E Bernstein
Journal:  PLoS Genet       Date:  2010-12-09       Impact factor: 5.917

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  43 in total

Review 1.  A double take on bivalent promoters.

Authors:  Philipp Voigt; Wee-Wei Tee; Danny Reinberg
Journal:  Genes Dev       Date:  2013-06-15       Impact factor: 11.361

2.  Genome-wide identification of enhancers in skeletal muscle: the role of MyoD1.

Authors:  Roy Blum; Vasupradha Vethantham; Christopher Bowman; Michael Rudnicki; Brian D Dynlacht
Journal:  Genes Dev       Date:  2012-12-15       Impact factor: 11.361

Review 3.  Disruption of long-range gene regulation in human genetic disease: a kaleidoscope of general principles, diverse mechanisms and unique phenotypic consequences.

Authors:  Shipra Bhatia; Dirk A Kleinjan
Journal:  Hum Genet       Date:  2014-02-05       Impact factor: 4.132

Review 4.  Polycomb group response elements in Drosophila and vertebrates.

Authors:  Judith A Kassis; J Lesley Brown
Journal:  Adv Genet       Date:  2013       Impact factor: 1.944

Review 5.  In search of lost time: Enhancers as modulators of timing in lymphocyte development and differentiation.

Authors:  Jonathan M Chu; Nicholas A Pease; Hao Yuan Kueh
Journal:  Immunol Rev       Date:  2021-03-18       Impact factor: 12.988

Review 6.  Nuclear organization and genome function.

Authors:  Kevin Van Bortle; Victor G Corces
Journal:  Annu Rev Cell Dev Biol       Date:  2012-08-17       Impact factor: 13.827

Review 7.  Modification of enhancer chromatin: what, how, and why?

Authors:  Eliezer Calo; Joanna Wysocka
Journal:  Mol Cell       Date:  2013-03-07       Impact factor: 17.970

8.  Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin.

Authors:  Sean Whalen; Rebecca M Truty; Katherine S Pollard
Journal:  Nat Genet       Date:  2016-04-04       Impact factor: 38.330

9.  Gene networks and chromatin and transcriptional regulation of the phaseolin promoter in Arabidopsis.

Authors:  Sabarinath Sundaram; Sunee Kertbundit; Eugene V Shakirov; Lakshminarayan M Iyer; Miloslav Jurícek; Timothy C Hall
Journal:  Plant Cell       Date:  2013-07-19       Impact factor: 11.277

10.  Dot1l deficiency leads to increased intercalated cells and upregulation of V-ATPase B1 in mice.

Authors:  Zhou Xiao; Lihe Chen; Qiaoling Zhou; Wenzheng Zhang
Journal:  Exp Cell Res       Date:  2015-09-25       Impact factor: 3.905

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