Literature DB >> 21725364

The von Hippel-Lindau tumor suppressor protein regulates gene expression and tumor growth through histone demethylase JARID1C.

X Niu1, T Zhang, L Liao, L Zhou, D J Lindner, M Zhou, B Rini, Q Yan, H Yang.   

Abstract

In clear-cell renal cell carcinoma (ccRCC), inactivation of the pan class="Disease">tumor suppressor von Hippel-Lindau (VHL) occurs in the majority of the tumors and is causal for the pathogenesis of ccRCC. Recently, a large-scale genomic sequencing study of ccRCC tumors revealed that enzymes that regulate histone H3 lysine 4 trimethylation (H3K4Me3), such as JARID1C/KDM5C/SMCX and MLL2, were mutated in ccRCC tumors, suggesting that H3K4Me3 might have an important role in regulating gene expression and tumorigenesis. In this study we report that in VHL-deficient ccRCC cells, the overall H3K4Me3 levels were significantly lower than that of VHL+/+ counterparts. Furthermore, this was hypoxia-inducible factor (HIF) dependent, as depletion of HIF subunits by small hairpin RNA in VHL-deficient ccRCC cells restored H3K4Me3 levels. In addition, we demonstrated that only loss of JARID1C, not JARID1A or JARID1B, abolished the difference of H3K4Me3 levels between VHL-/- and VHL+/+ cells, and JARID1C displayed HIF-dependent expression pattern. JARID1C in VHL-/- cells was responsible for the suppression of HIF-responsive genes insulin-like growth factor-binding protein 3 (IGFBP3), DNAJC12, COL6A1, growth and differentiation factor 15 (GDF15) and density-enhanced phosphatase 1. Consistent with these findings, the H3K4Me3 levels at the promoters of IGFBP3, DNAJC12, COL6A1 and GDF15 were lower in VHL-/- cells than in VHL+/+ cells, and the differences disappeared after JARID1C depletion. Although HIF2α is an oncogene in ccRCC, some of its targets might have tumor suppressive activity. Consistent with this, knockdown of JARID1C in 786-O VHL-/- ccRCC cells significantly enhanced tumor growth in a xenograft model, suggesting that JARID1C is tumor suppressive and its mutations are tumor promoting in ccRCC. Thus, VHL inactivation decreases H3K4Me3 levels through JARID1C, which alters gene expression and suppresses tumor growth.

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Year:  2011        PMID: 21725364      PMCID: PMC4238297          DOI: 10.1038/onc.2011.266

Source DB:  PubMed          Journal:  Oncogene        ISSN: 0950-9232            Impact factor:   9.867


  46 in total

1.  Escape from X chromosome inactivation is an intrinsic property of the Jarid1c locus.

Authors:  Nan Li; Laura Carrel
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-29       Impact factor: 11.205

2.  The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases.

Authors:  Shigeki Iwase; Fei Lan; Peter Bayliss; Luis de la Torre-Ubieta; Maite Huarte; Hank H Qi; Johnathan R Whetstine; Azad Bonni; Thomas M Roberts; Yang Shi
Journal:  Cell       Date:  2007-02-22       Impact factor: 41.582

3.  Sporadic clear cell renal cell carcinoma but not the papillary type is characterized by severely reduced frequency of primary cilia.

Authors:  Peter Schraml; Ian J Frew; Claudio R Thoma; Gunther Boysen; Kirsten Struckmann; Wilhelm Krek; Holger Moch
Journal:  Mod Pathol       Date:  2008-07-25       Impact factor: 7.842

4.  The histone demethylases JMJD1A and JMJD2B are transcriptional targets of hypoxia-inducible factor HIF.

Authors:  Sophie Beyer; Malene Maag Kristensen; Kim Steen Jensen; Jens Vilstrup Johansen; Peter Staller
Journal:  J Biol Chem       Date:  2008-11-04       Impact factor: 5.157

5.  The von Hippel-Lindau tumor suppressor protein and Egl-9-Type proline hydroxylases regulate the large subunit of RNA polymerase II in response to oxidative stress.

Authors:  Olga Mikhaylova; Monika L Ignacak; Teresa J Barankiewicz; Svetlana V Harbaugh; Ying Yi; Patrick H Maxwell; Martin Schneider; Katie Van Geyte; Peter Carmeliet; Monica P Revelo; Michael Wyder; Kenneth D Greis; Jarek Meller; Maria F Czyzyk-Krzeska
Journal:  Mol Cell Biol       Date:  2008-02-19       Impact factor: 4.272

6.  Hypoxia upregulates the histone demethylase JMJD1A via HIF-1.

Authors:  Sven Wellmann; Maxi Bettkober; Andrea Zelmer; Karl Seeger; Marion Faigle; Holger K Eltzschig; Christoph Bührer
Journal:  Biochem Biophys Res Commun       Date:  2008-06-04       Impact factor: 3.575

7.  The histone H3K4 demethylase SMCX links REST target genes to X-linked mental retardation.

Authors:  Mamta Tahiliani; Pinchao Mei; Rui Fang; Thiago Leonor; Michael Rutenberg; Fumiko Shimizu; Jing Li; Anjana Rao; Yujiang Shi
Journal:  Nature       Date:  2007-04-29       Impact factor: 49.962

8.  Regulation of Jumonji-domain-containing histone demethylases by hypoxia-inducible factor (HIF)-1alpha.

Authors:  Patrick J Pollard; Christoph Loenarz; David R Mole; Michael A McDonough; Jonathan M Gleadle; Christopher J Schofield; Peter J Ratcliffe
Journal:  Biochem J       Date:  2008-12-15       Impact factor: 3.857

9.  pVHL acts as an adaptor to promote the inhibitory phosphorylation of the NF-kappaB agonist Card9 by CK2.

Authors:  Haifeng Yang; Yoji Andrew Minamishima; Qin Yan; Susanne Schlisio; Benjamin L Ebert; Xiaoping Zhang; Liang Zhang; William Y Kim; Aria F Olumi; William G Kaelin
Journal:  Mol Cell       Date:  2007-10-12       Impact factor: 17.970

10.  Integrative analysis of HIF binding and transactivation reveals its role in maintaining histone methylation homeostasis.

Authors:  Xiaobo Xia; Madeleine E Lemieux; Wei Li; Jason S Carroll; Myles Brown; X Shirley Liu; Andrew L Kung
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-02       Impact factor: 11.205

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  71 in total

Review 1.  The roles of chromatin-remodelers and epigenetic modifiers in kidney cancer.

Authors:  Lili Liao; Joseph R Testa; Haifeng Yang
Journal:  Cancer Genet       Date:  2015-02-20

Review 2.  Renal cell carcinoma deep sequencing: recent developments.

Authors:  Leslie J Farber; Kyle Furge; Bin Tean Teh
Journal:  Curr Oncol Rep       Date:  2012-06       Impact factor: 5.075

3.  A high-throughput screen identifies miRNA inhibitors regulating lung cancer cell survival and response to paclitaxel.

Authors:  Liqin Du; Robert Borkowski; Zhenze Zhao; Xiuye Ma; Xiaojie Yu; Xian-Jin Xie; Alexander Pertsemlidis
Journal:  RNA Biol       Date:  2013-09-30       Impact factor: 4.652

4.  Suppression of Enhancer Overactivation by a RACK7-Histone Demethylase Complex.

Authors:  Hongjie Shen; Wenqi Xu; Rui Guo; Bowen Rong; Lei Gu; Zhentian Wang; Chenxi He; Lijuan Zheng; Xin Hu; Zhen Hu; Zhi-Ming Shao; Pengyuan Yang; Feizhen Wu; Yujiang Geno Shi; Yang Shi; Fei Lan
Journal:  Cell       Date:  2016-04-07       Impact factor: 41.582

5.  Epigenetic silencing of Na,K-ATPase β 1 subunit gene ATP1B1 by methylation in clear cell renal cell carcinoma.

Authors:  Ponniah Selvakumar; Tori A Owens; Justin M David; Nicholas J Petrelli; Brock C Christensen; Ashakumary Lakshmikuttyamma; Ayyappan K Rajasekaran
Journal:  Epigenetics       Date:  2014-01-22       Impact factor: 4.528

Review 6.  T-cell lymphoma with von Hippel-Lindau disease: a rare case report and review of literature.

Authors:  Li-Hong Lou; Hua Shen; Jun Lin; Yi-Wen Yan; Yan Peng; Jian-Hong Lu; Qu Xu; Hai-Qiong Jiang
Journal:  Int J Clin Exp Pathol       Date:  2015-05-01

Review 7.  Inhibitors of Protein Methyltransferases and Demethylases.

Authors:  H Ümit Kaniskan; Michael L Martini; Jian Jin
Journal:  Chem Rev       Date:  2017-03-24       Impact factor: 60.622

Review 8.  Atypical fetal development: Fetal alcohol syndrome, nutritional deprivation, teratogens, and risk for neurodevelopmental disorders and psychopathology.

Authors:  Michael K Georgieff; Phu V Tran; Erik S Carlson
Journal:  Dev Psychopathol       Date:  2018-08

9.  Genomic Biomarkers of a Randomized Trial Comparing First-line Everolimus and Sunitinib in Patients with Metastatic Renal Cell Carcinoma.

Authors:  James J Hsieh; David Chen; Patricia I Wang; Mahtab Marker; Almedina Redzematovic; Ying-Bei Chen; S Duygu Selcuklu; Nils Weinhold; Nancy Bouvier; Kety H Huberman; Umesh Bhanot; Michael S Chevinsky; Parul Patel; Patrizia Pinciroli; Helen H Won; Daoqi You; Agnes Viale; William Lee; A Ari Hakimi; Michael F Berger; Nicholas D Socci; Emily H Cheng; Jennifer Knox; Martin H Voss; Maurizio Voi; Robert J Motzer
Journal:  Eur Urol       Date:  2016-10-15       Impact factor: 20.096

Review 10.  The control of histone methylation and gene expression by oxidative stress, hypoxia, and metals.

Authors:  Yana Chervona; Max Costa
Journal:  Free Radic Biol Med       Date:  2012-07-25       Impact factor: 7.376

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