Literature DB >> 21153512

Dynamics of the higher-order structure of chromatin.

Ping Chen1, Guohong Li.   

Abstract

Eukaryotic DNA is hierarchically packaged into chromatin to fit inside the nucleus. Dynamics of the chromatin structure plays a critical role in transcriptional regulation and other biological processes that involve DNA, such as DNA replication and DNA repair. Many factors, including histone variants, histone modification, DNA methylation and the binding of non-histone architectural proteins regulate the structure of chromatin. Although the structure of nucleosomes, the fundamental repeating unit of chromatin, is clear, there is still much discussion on the higher-order levels of chromatin structure. Identifying the structural details and dynamics of higher-order chromatin fibers is therefore very important for understanding the organization and regulation of gene activities. Here, we review studies on the dynamics of chromatin higher order structure and its relationship with gene transcription.

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Year:  2010        PMID: 21153512      PMCID: PMC4875152          DOI: 10.1007/s13238-010-0130-y

Source DB:  PubMed          Journal:  Protein Cell        ISSN: 1674-800X            Impact factor:   14.870


  29 in total

1.  H2A.Z alters the nucleosome surface to promote HP1alpha-mediated chromatin fiber folding.

Authors:  Jun Y Fan; Danny Rangasamy; Karolin Luger; David J Tremethick
Journal:  Mol Cell       Date:  2004-11-19       Impact factor: 17.970

2.  X-ray structure of a tetranucleosome and its implications for the chromatin fibre.

Authors:  Thomas Schalch; Sylwia Duda; David F Sargent; Timothy J Richmond
Journal:  Nature       Date:  2005-07-07       Impact factor: 49.962

3.  EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure.

Authors:  Philip J J Robinson; Louise Fairall; Van A T Huynh; Daniela Rhodes
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-14       Impact factor: 11.205

4.  L3MBTL1, a histone-methylation-dependent chromatin lock.

Authors:  Patrick Trojer; Guohong Li; Robert J Sims; Alejandro Vaquero; Nagesh Kalakonda; Piernicola Boccuni; Donghoon Lee; Hediye Erdjument-Bromage; Paul Tempst; Stephen D Nimer; Yuh-Hwa Wang; Danny Reinberg
Journal:  Cell       Date:  2007-06-01       Impact factor: 41.582

5.  Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure.

Authors:  Andrew Routh; Sara Sandin; Daniela Rhodes
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-26       Impact factor: 11.205

6.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

7.  Structure of the 300A chromatin filament: X-ray diffraction from oriented samples.

Authors:  J Widom; A Klug
Journal:  Cell       Date:  1985-11       Impact factor: 41.582

8.  Dynamics and function of compact nucleosome arrays.

Authors:  Michael G Poirier; Eugene Oh; Hannah S Tims; Jonathan Widom
Journal:  Nat Struct Mol Biol       Date:  2009-08-23       Impact factor: 15.369

9.  Highly compacted chromatin formed in vitro reflects the dynamics of transcription activation in vivo.

Authors:  Guohong Li; Raphael Margueron; Guobin Hu; David Stokes; Yuh-Hwa Wang; Danny Reinberg
Journal:  Mol Cell       Date:  2010-04-09       Impact factor: 17.970

10.  Cation-chromatin binding as shown by ion microscopy is essential for the structural integrity of chromosomes.

Authors:  R Strick; P L Strissel; K Gavrilov; R Levi-Setti
Journal:  J Cell Biol       Date:  2001-12-10       Impact factor: 10.539

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  6 in total

1.  Dynamic nature of transcriptional regulation of nuclear receptor target genes in the context of chromatin organization.

Authors:  Sami Väisänen; Juha Matilainen; Carsten Carlberg
Journal:  Dermatoendocrinol       Date:  2011-07-01

2.  Decoding Cinnabarinic Acid-Specific Stanniocalcin 2 Induction by Aryl Hydrocarbon Receptor.

Authors:  Nikhil Y Patil; Hui Tang; Iulia Rus; Kangling Zhang; Aditya D Joshi
Journal:  Mol Pharmacol       Date:  2021-11-11       Impact factor: 4.436

3.  The role of epigenetic mechanisms and processes in autoimmune disorders.

Authors:  Judith M Greer; Pamela A McCombe
Journal:  Biologics       Date:  2012-09-06

4.  Microarray Analysis Reveals Potential Biological Functions of Histone H2B Monoubiquitination.

Authors:  You Wu; Ping Chen; Yuanya Jing; Chen Wang; Yu-Long Men; Wang Zhan; Qiang Wang; Zhixue Gan; Jin Huang; Kun Xie; Jiangsheng Mi; Chenghua Yu; Xiuqing Yu; Pei-Chao Chen; Jian-Feng Chang; Fengfeng Cai; Su Chen
Journal:  PLoS One       Date:  2015-07-15       Impact factor: 3.240

5.  Epigenetic control and cancer: the potential of histone demethylases as therapeutic targets.

Authors:  Fernando Lizcano; Jeison Garcia
Journal:  Pharmaceuticals (Basel)       Date:  2012-09-12

6.  Histone variants H2A.Z and H3.3 coordinately regulate PRC2-dependent H3K27me3 deposition and gene expression regulation in mES cells.

Authors:  Yan Wang; Haizhen Long; Juan Yu; Liping Dong; Michel Wassef; Baowen Zhuo; Xia Li; Jicheng Zhao; Min Wang; Cuifang Liu; Zengqi Wen; Luyuan Chang; Ping Chen; Qian-Fei Wang; Xueqing Xu; Raphael Margueron; Guohong Li
Journal:  BMC Biol       Date:  2018-09-24       Impact factor: 7.431

  6 in total

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