Literature DB >> 9399794

The PIR-International Protein Sequence Database.

W C Barker1, J S Garavelli, D H Haft, L T Hunt, C R Marzec, B C Orcutt, G Y Srinivasarao, L S Yeh, R S Ledley, H W Mewes, F Pfeiffer, A Tsugita.   

Abstract

From its origin the Protein Information Resource (http://www-nbrf. georgetown.edu/pir/) has supported research on evolution and computational biology by designing and compiling a comprehensive, quality controlled, and well-organized protein sequence database. The database has been produced and updated on a regular schedule since 1984. Since 1988 it has been maintained collaboratively by the PIR-International, an association of data collection centers engaged in international cooperation for the development of this research resource during a period of explosive acquisition of new data. As of June 1997, essentially all sequence entries have been classified into families, allowing the efficient application of methods to propagate and standardize annotation among related sequences. The databases are available through the Internet by the World-Wide Web and FTP, or on CD-ROM and magnetic media.

Mesh:

Substances:

Year:  1998        PMID: 9399794      PMCID: PMC147240          DOI: 10.1093/nar/26.1.27

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  18 in total

1.  NRL-3D: a sequence-structure database derived from the protein data bank (PDB) and searchable within the PIR environment.

Authors:  N Pattabiraman; K Namboodiri; A Lowrey; B P Gaber
Journal:  Protein Seq Data Anal       Date:  1990-10

2.  Analysis of post-translational modifications of proteins by accurate mass measurement in fast atom bombardment mass spectrometry.

Authors:  T Takao; K Yoshino; N Suzuki; Y Shimonishi
Journal:  Biomed Environ Mass Spectrom       Date:  1990-11

3.  The origin and evolution of protein superfamilies.

Authors:  M O Dayhoff
Journal:  Fed Proc       Date:  1976-08

4.  Superfamily classification in PIR-International Protein Sequence Database.

Authors:  W C Barker; F Pfeiffer; D G George
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

Review 5.  Protein structure analysis by mass spectrometry.

Authors:  J R Yates
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

6.  Improved tools for biological sequence comparison.

Authors:  W R Pearson; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

7.  Characterization by tandem mass spectrometry of structural modifications in proteins.

Authors:  K Biemann; H A Scoble
Journal:  Science       Date:  1987-08-28       Impact factor: 47.728

8.  The PIR-International databases.

Authors:  W C Barker; D G George; H W Mewes; F Pfeiffer; A Tsugita
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

Review 9.  Life with 6000 genes.

Authors:  A Goffeau; B G Barrell; H Bussey; R W Davis; B Dujon; H Feldmann; F Galibert; J D Hoheisel; C Jacq; M Johnston; E J Louis; H W Mewes; Y Murakami; P Philippsen; H Tettelin; S G Oliver
Journal:  Science       Date:  1996-10-25       Impact factor: 47.728

10.  Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii.

Authors:  C J Bult; O White; G J Olsen; L Zhou; R D Fleischmann; G G Sutton; J A Blake; L M FitzGerald; R A Clayton; J D Gocayne; A R Kerlavage; B A Dougherty; J F Tomb; M D Adams; C I Reich; R Overbeek; E F Kirkness; K G Weinstock; J M Merrick; A Glodek; J L Scott; N S Geoghagen; J C Venter
Journal:  Science       Date:  1996-08-23       Impact factor: 47.728

View more
  19 in total

1.  EMGLib: the enhanced microbial genomes library (update 2000).

Authors:  G Perrière; P Bessières; B Labedan
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Presentation of the Morris F. Collen Award to Robert S. Ledley, DDS.

Authors:  N C Broering
Journal:  J Am Med Inform Assoc       Date:  1999 May-Jun       Impact factor: 4.497

Review 3.  Bioinformatics in support of molecular medicine.

Authors:  R B Altman
Journal:  Proc AMIA Symp       Date:  1998

4.  GPCRDB: an information system for G protein-coupled receptors.

Authors:  F Horn; J Weare; M W Beukers; S Hörsch; A Bairoch; W Chen; O Edvardsen; F Campagne; G Vriend
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

5.  The PRINTS protein fingerprint database in its fifth year.

Authors:  T K Attwood; M E Beck; D R Flower; P Scordis; J N Selley
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

6.  MIPS: a database for protein sequences and complete genomes.

Authors:  H W Mewes; J Hani; F Pfeiffer; D Frishman
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

7.  PhosphoBase: a database of phosphorylation sites.

Authors:  N Blom; A Kreegipuu; S Brunak
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

8.  The non-redundant Bacillus subtilis (NRSub) database: update 1998.

Authors:  G Perrière; M Gouy; T Gojobori
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

9.  MHCPEP, a database of MHC-binding peptides: update 1997.

Authors:  V Brusic; G Rudy; L C Harrison
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

10.  THGS: a web-based database of Transmembrane Helices in Genome Sequences.

Authors:  S A Fernando; P Selvarani; Soma Das; Ch Kiran Kumar; Sukanta Mondal; S Ramakumar; K Sekar
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.