Literature DB >> 9399852

GPCRDB: an information system for G protein-coupled receptors.

F Horn1, J Weare, M W Beukers, S Hörsch, A Bairoch, W Chen, O Edvardsen, F Campagne, G Vriend.   

Abstract

The GPCRDB is a G protein-coupled receptor (GPCR) database system aimed at the collection and dissemination of GPCR related data. It holds sequences, mutant data and ligand binding constants as primary (experimental) data. Computationally derived data such as multiple sequence alignments, three dimensional models, phylogenetic trees and two dimensional visualization tools are added to enhance the database's usefulness. The GPCRDB is an EU sponsored project aimed at building a generic molecular class specific database capable of dealing with highly heterogeneous data. GPCRs were chosen as test molecules because of their enormous importance for medical sciences and due to the availability of so much highly heterogeneous data. The GPCRDB is available via the WWW at http://www.gpcr.org/7tm

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Year:  1998        PMID: 9399852      PMCID: PMC147194          DOI: 10.1093/nar/26.1.275

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  17 in total

1.  WHAT IF: a molecular modeling and drug design program.

Authors:  G Vriend
Journal:  J Mol Graph       Date:  1990-03

2.  Database of homology-derived protein structures and the structural meaning of sequence alignment.

Authors:  C Sander; R Schneider
Journal:  Proteins       Date:  1991

3.  A database of mutants and effects of site-directed mutagenesis experiments on G protein-coupled receptors.

Authors:  K Kristiansen; S G Dahl; O Edvardsen
Journal:  Proteins       Date:  1996-09

4.  Structure of the third cytoplasmic loop of bovine rhodopsin.

Authors:  P L Yeagle; J L Alderfer; A D Albert
Journal:  Biochemistry       Date:  1995-11-14       Impact factor: 3.162

5.  RASMOL: biomolecular graphics for all.

Authors:  R A Sayle; E J Milner-White
Journal:  Trends Biochem Sci       Date:  1995-09       Impact factor: 13.807

6.  Low resolution structure of bovine rhodopsin determined by electron cryo-microscopy.

Authors:  V M Unger; G F Schertler
Journal:  Biophys J       Date:  1995-05       Impact factor: 4.033

7.  Potential ligand-binding residues in rat olfactory receptors identified by correlated mutation analysis.

Authors:  M S Singer; L Oliveira; G Vriend; G M Shepherd
Journal:  Receptors Channels       Date:  1995

8.  GCRDb: a G-protein-coupled receptor database.

Authors:  L F Kolakowski
Journal:  Receptors Channels       Date:  1994

9.  Projection structure of rhodopsin.

Authors:  G F Schertler; C Villa; R Henderson
Journal:  Nature       Date:  1993-04-22       Impact factor: 49.962

10.  The probable arrangement of the helices in G protein-coupled receptors.

Authors:  J M Baldwin
Journal:  EMBO J       Date:  1993-04       Impact factor: 11.598

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  87 in total

1.  Olfactory receptor database: a sensory chemoreceptor resource.

Authors:  E Skoufos; L Marenco; P M Nadkarni; P L Miller; G M Shepherd
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Collecting and harvesting biological data: the GPCRDB and NucleaRDB information systems.

Authors:  F Horn; G Vriend; F E Cohen
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  Evolutionary relationships among G protein-coupled receptors using a clustered database approach.

Authors:  R C Graul; W Sadée
Journal:  AAPS PharmSci       Date:  2001

4.  tGRAP, the G-protein coupled receptors mutant database.

Authors:  Oyvind Edvardsen; Anne Lise Reiersen; Margot W Beukers; Kurt Kristiansen
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

5.  Olfactory Receptor Database: a metadata-driven automated population from sources of gene and protein sequences.

Authors:  Chiquito Crasto; Luis Marenco; Perry Miller; Gordon Shepherd
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

6.  Classification of G-protein coupled receptors by alignment-independent extraction of principal chemical properties of primary amino acid sequences.

Authors:  Maris Lapinsh; Alexandrs Gutcaits; Peteris Prusis; Claes Post; Torbjörn Lundstedt; Jarl E S Wikberg
Journal:  Protein Sci       Date:  2002-04       Impact factor: 6.725

7.  GABA(B2) is essential for g-protein coupling of the GABA(B) receptor heterodimer.

Authors:  M J Robbins; A R Calver; A K Filippov; W D Hirst; R B Russell; M D Wood; S Nasir; A Couve; D A Brown; S J Moss; M N Pangalos
Journal:  J Neurosci       Date:  2001-10-15       Impact factor: 6.167

Review 8.  Sequence analyses of G-protein-coupled receptors: similarities to rhodopsin.

Authors:  Tara Mirzadegan; Gil Benkö; Sławomir Filipek; Krzysztof Palczewski
Journal:  Biochemistry       Date:  2003-03-18       Impact factor: 3.162

9.  In silico pattern-based analysis of the human cytomegalovirus genome.

Authors:  Isidore Rigoutsos; Jiri Novotny; Tien Huynh; Stephen T Chin-Bow; Laxmi Parida; Daniel Platt; David Coleman; Thomas Shenk
Journal:  J Virol       Date:  2003-04       Impact factor: 5.103

10.  NRMD: Nuclear Receptor Mutation Database.

Authors:  Joost J J Van Durme; Emmanuel Bettler; Simon Folkertsma; Florence Horn; Gert Vriend
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

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