Literature DB >> 9399795

MIPS: a database for protein sequences and complete genomes.

H W Mewes1, J Hani, F Pfeiffer, D Frishman.   

Abstract

The MIPS group [Munich Information Center for Protein Sequences of the German National Center for Environment and Health (GSF)] at the Max-Planck-Institute for Biochemistry, Martinsried near Munich, Germany, is involved in a number of data collection activities, including a comprehensive database of the yeast genome, a database reflecting the progress in sequencing the Arabidopsis thaliana genome, the systematic analysis of other small genomes and the collection of protein sequence data within the framework of the PIR-International Protein Sequence Database (described elsewhere in this volume). Through its WWW server (http://www.mips.biochem.mpg.de ) MIPS provides access to a variety of generic databases, including a database of protein families as well as automatically generated data by the systematic application of sequence analysis algorithms. The yeast genome sequence and its related information was also compiled on CD-ROM to provide dynamic interactive access to the 16 chromosomes of the first eukaryotic genome unraveled.

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Year:  1998        PMID: 9399795      PMCID: PMC147239          DOI: 10.1093/nar/26.1.33

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  31 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  PATMAT: a searching and extraction program for sequence, pattern and block queries and databases.

Authors:  J C Wallace; S Henikoff
Journal:  Comput Appl Biosci       Date:  1992-06

3.  Rapid and sensitive sequence comparison with FASTP and FASTA.

Authors:  W R Pearson
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

4.  Knowledge-based protein secondary structure assignment.

Authors:  D Frishman; P Argos
Journal:  Proteins       Date:  1995-12

5.  Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.

Authors:  T Kaneko; S Sato; H Kotani; A Tanaka; E Asamizu; Y Nakamura; N Miyajima; M Hirosawa; M Sugiura; S Sasamoto; T Kimura; T Hosouchi; A Matsuno; A Muraki; N Nakazaki; K Naruo; S Okumura; S Shimpo; C Takeuchi; T Wada; A Watanabe; M Yamada; M Yasuda; S Tabata
Journal:  DNA Res       Date:  1996-06-30       Impact factor: 4.458

6.  Incorporation of non-local interactions in protein secondary structure prediction from the amino acid sequence.

Authors:  D Frishman; P Argos
Journal:  Protein Eng       Date:  1996-02

7.  The PROSITE database, its status in 1997.

Authors:  A Bairoch; P Bucher; K Hofmann
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

8.  MIPS: a database for protein sequences, homology data and yeast genome information.

Authors:  H W Mewes; K Albermann; K Heumann; S Liebl; F Pfeiffer
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

9.  Seventy-five percent accuracy in protein secondary structure prediction.

Authors:  D Frishman; P Argos
Journal:  Proteins       Date:  1997-03

10.  Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium.

Authors:  R Himmelreich; H Plagens; H Hilbert; B Reiner; R Herrmann
Journal:  Nucleic Acids Res       Date:  1997-02-15       Impact factor: 16.971

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  24 in total

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Authors:  F Gindullis; I Meier
Journal:  Plant Cell       Date:  1999-06       Impact factor: 11.277

2.  ProClass protein family database.

Authors:  H Huang; C Xiao; C H Wu
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins.

Authors:  R Jansen; M Gerstein
Journal:  Nucleic Acids Res       Date:  2000-03-15       Impact factor: 16.971

4.  The peculiar architectural framework of tRNASec is fully recognized by yeast AspRS.

Authors:  J Rudinger-Thirion; R Giegé
Journal:  RNA       Date:  1999-04       Impact factor: 4.942

Review 5.  Gcn4p, a master regulator of gene expression, is controlled at multiple levels by diverse signals of starvation and stress.

Authors:  Alan G Hinnebusch; Krishnamurthy Natarajan
Journal:  Eukaryot Cell       Date:  2002-02

6.  The Arabidopsis nuclear pore and nuclear envelope.

Authors:  Iris Meier; Jelena Brkljacic
Journal:  Arabidopsis Book       Date:  2010-10-07

7.  Conservation of matrix attachment region-binding filament-like protein 1 among higher plants.

Authors:  P A Harder; R A Silverstein; I Meier
Journal:  Plant Physiol       Date:  2000-01       Impact factor: 8.340

8.  Bayesian error analysis model for reconstructing transcriptional regulatory networks.

Authors:  Ning Sun; Raymond J Carroll; Hongyu Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-15       Impact factor: 11.205

9.  Exploration of yeast alkali metal cation/H+ antiporters: sequence and structure comparison.

Authors:  L Pribylová; K Papousková; M Zavrel; J L Souciet; H Sychrová
Journal:  Folia Microbiol (Praha)       Date:  2006       Impact factor: 2.099

10.  Natural selection against protein aggregation on self-interacting and essential proteins in yeast, fly, and worm.

Authors:  Yiwen Chen; Nikolay V Dokholyan
Journal:  Mol Biol Evol       Date:  2008-05-23       Impact factor: 16.240

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