Literature DB >> 8332528

The PIR-International databases.

W C Barker1, D G George, H W Mewes, F Pfeiffer, A Tsugita.   

Abstract

PIR-International is an association of macromolecular sequence data collection centers dedicated to fostering international cooperation as an essential element in the development of scientific databases. PIR-International is most noted for the Protein Sequence Database. This database originated in the early 1960's with the pioneering work of the late Margaret Dayhoff as a research tool for the study of protein evolution and intersequence relationships; it is maintained as a scientific resource, organized by biological concepts, using sequence homology as a guiding principle. PIR-International also maintains a number of other genomic, protein sequence, and sequence-related databases. The databases of PIR-International are made widely available. This paper briefly describes the architecture of the Protein Sequence Database, a number of other PIR-International databases, and mechanisms for providing access to and for distribution of these databases.

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Year:  1993        PMID: 8332528      PMCID: PMC309735          DOI: 10.1093/nar/21.13.3089

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  15 in total

1.  NRL-3D: a sequence-structure database derived from the protein data bank (PDB) and searchable within the PIR environment.

Authors:  N Pattabiraman; K Namboodiri; A Lowrey; B P Gaber
Journal:  Protein Seq Data Anal       Date:  1990-10

2.  Fragment peptide library for classification and functional prediction of proteins.

Authors:  Y Seto; Y Ikeuchi; M Kanehisa
Journal:  Proteins       Date:  1990

3.  The EMBL Data Library.

Authors:  D G Higgins; R Fuchs; P J Stoehr; G N Cameron
Journal:  Nucleic Acids Res       Date:  1992-05-11       Impact factor: 16.971

4.  GenBank.

Authors:  C Burks; M J Cinkosky; W M Fischer; P Gilna; J E Hayden; G M Keen; M Kelly; D Kristofferson; J Lawrence
Journal:  Nucleic Acids Res       Date:  1992-05-11       Impact factor: 16.971

5.  Escherichia coli K12 genomic database.

Authors:  T Kunisawa; M Nakamura; H Watanabe; J Otsuka; A Tsugita; L S Yeh; D G George; W C Barker
Journal:  Protein Seq Data Anal       Date:  1990-06

6.  Computer-assisted analysis of chromosomal locations and transcriptional directions of Escherichia coli genes.

Authors:  H Watanabe; T Kunisawa
Journal:  Protein Seq Data Anal       Date:  1990-06

7.  The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library.

Authors:  Y Kohara; K Akiyama; K Isono
Journal:  Cell       Date:  1987-07-31       Impact factor: 41.582

8.  Rapid and sensitive protein similarity searches.

Authors:  D J Lipman; W R Pearson
Journal:  Science       Date:  1985-03-22       Impact factor: 47.728

9.  Improved tools for biological sequence comparison.

Authors:  W R Pearson; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

Review 10.  Linkage map of Escherichia coli K-12, edition 7.

Authors:  B J Bachmann
Journal:  Microbiol Rev       Date:  1983-06
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  25 in total

1.  The protein information resource (PIR).

Authors:  W C Barker; J S Garavelli; H Huang; P B McGarvey; B C Orcutt; G Y Srinivasarao; C Xiao; L S Yeh; R S Ledley; J F Janda; F Pfeiffer; H W Mewes; A Tsugita; C Wu
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  NetOglyc: prediction of mucin type O-glycosylation sites based on sequence context and surface accessibility.

Authors:  J E Hansen; O Lund; N Tolstrup; A A Gooley; K L Williams; S Brunak
Journal:  Glycoconj J       Date:  1998-02       Impact factor: 2.916

3.  The PIR-International Protein Sequence Database.

Authors:  W C Barker; J S Garavelli; D H Haft; L T Hunt; C R Marzec; B C Orcutt; G Y Srinivasarao; L S Yeh; R S Ledley; H W Mewes; F Pfeiffer; A Tsugita
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

4.  O-GLYCBASE Version 3.0: a revised database of O-glycosylated proteins.

Authors:  J E Hansen; O Lund; J Nilsson; K Rapacki; S Brunak
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

5.  Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae.

Authors:  R Himmelreich; H Hilbert; H Plagens; E Pirkl; B C Li; R Herrmann
Journal:  Nucleic Acids Res       Date:  1996-11-15       Impact factor: 16.971

6.  The Protein Information Resource (PIR) and the PIR-International Protein Sequence Database.

Authors:  D G George; R J Dodson; J S Garavelli; D H Haft; L T Hunt; C R Marzec; B C Orcutt; K E Sidman; G Y Srinivasarao; L S Yeh; L M Arminski; R S Ledley; A Tsugita; W C Barker
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

7.  Homology model building of the HMG-1 box structural domain.

Authors:  A D Baxevanis; S H Bryant; D Landsman
Journal:  Nucleic Acids Res       Date:  1995-03-25       Impact factor: 16.971

8.  The HMG-1 box protein family: classification and functional relationships.

Authors:  A D Baxevanis; D Landsman
Journal:  Nucleic Acids Res       Date:  1995-05-11       Impact factor: 16.971

9.  Sequence analysis of 56 kb from the genome of the bacterium Mycoplasma pneumoniae comprising the dnaA region, the atp operon and a cluster of ribosomal protein genes.

Authors:  H Hilbert; R Himmelreich; H Plagens; R Herrmann
Journal:  Nucleic Acids Res       Date:  1996-02-15       Impact factor: 16.971

10.  Analysis of xylem formation in pine by cDNA sequencing.

Authors:  I Allona; M Quinn; E Shoop; K Swope; S St Cyr; J Carlis; J Riedl; E Retzel; M M Campbell; R Sederoff; R W Whetten
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-04       Impact factor: 11.205

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