Literature DB >> 9399879

PhosphoBase: a database of phosphorylation sites.

N Blom1, A Kreegipuu, S Brunak.   

Abstract

PhosphoBase is a database of experimentally verified phosphorylation sites. Version 1.0 contains 156 entries and 398 experimentally determined phosphorylation sites. Entries are compiled and revised from the literature and from major protein sequence databases such as SwissProt and PIR. The entries provide information about the phosphoprotein and the exact position of its phosphorylation sites. Furthermore, part of the entries contain information about kinetic data obtained from enzyme assays on specific peptides. To illustrate the use of data extracted from PhosphoBase we present a sequence logo displaying the overall conservation of positions around serines phosphorylated by protein kinase A (PKA). PhosphoBase is available on the WWW at http://www.cbs.dtu.dk/databases/PhosphoBase/

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Year:  1998        PMID： 9399879      PMCID： PMC147210          DOI： 10.1093/nar/26.1.382

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  13 in total

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Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

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Journal:  Protein Sci       Date:  1996-11       Impact factor: 6.725

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Journal:  FASEB J       Date:  1994-11       Impact factor: 5.191

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Authors:  H R Matthews
Journal:  Pharmacol Ther       Date:  1995       Impact factor: 12.310

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Authors:  W Tegge; R Frank; F Hofmann; W R Dostmann
Journal:  Biochemistry       Date:  1995-08-22       Impact factor: 3.162
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  14 in total

1.  AutoMotif Server for prediction of phosphorylation sites in proteins using support vector machine: 2007 update.

Authors:  Dariusz Plewczynski; Adrian Tkacz; Lucjan S Wyrwicz; Leszek Rychlewski; Krzysztof Ginalski
Journal:  J Mol Model       Date:  2007-11-08       Impact factor: 1.810

2.  Accuracy of density functionals in the description of dispersion interactions and IR spectra of phosphates and phosphorylated compounds.

Authors:  Ashwani Sharma; Gilles Ohanessian; Carine Clavaguéra
Journal:  J Mol Model       Date:  2014-08-22       Impact factor: 1.810

3.  Phosphorylation of serine palmitoyltransferase long chain-1 (SPTLC1) on tyrosine 164 inhibits its activity and promotes cell survival.

Authors:  Saïd Taouji; Arisa Higa; Frédéric Delom; Sandrine Palcy; François-Xavier Mahon; Jean-Max Pasquet; Roger Bossé; Bruno Ségui; Eric Chevet
Journal:  J Biol Chem       Date:  2013-04-29       Impact factor: 5.157

4.  Phosphorylation of Oct-2 at sites located in the POU domain induces differential down-regulation of Oct-2 DNA-binding ability.

Authors:  V Pevzner; R Kraft; S Kostka; M Lipp
Journal:  Biochem J       Date:  2000-04-01       Impact factor: 3.857

5.  PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae.

Authors:  Chris Stark; Ting-Cheng Su; Ashton Breitkreutz; Pedro Lourenco; Matthew Dahabieh; Bobby-Joe Breitkreutz; Mike Tyers; Ivan Sadowski
Journal:  Database (Oxford)       Date:  2010-01-28       Impact factor: 3.451

6.  EP1- and FP-mediated cross-desensitization of the alpha (alpha) and beta (beta) isoforms of the human thromboxane A2 receptor.

Authors:  Leanne P Kelley-Hickie; B Therese Kinsella
Journal:  Br J Pharmacol       Date:  2004-04-20       Impact factor: 8.739

Review 7.  Is the junctional uncoupling elicited in rat ventricular myocytes by some dephosphorylation treatments due to changes in the phosphorylation status of Cx43?

Authors:  Jean-Claude Hervé; Isabelle Plaisance; Jadranka Loncarek; Fabien Duthe; Denis Sarrouilhe
Journal:  Eur Biophys J       Date:  2004-01-27       Impact factor: 1.733

8.  KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites.

Authors:  Hsien-Da Huang; Tzong-Yi Lee; Shih-Wei Tzeng; Jorng-Tzong Horng
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

9.  Homologous desensitization of signalling by the alpha (alpha) isoform of the human thromboxane A2 receptor: a specific role for nitric oxide signalling.

Authors:  Leanne P Kelley-Hickie; Martina B O'Keeffe; Helen M Reid; B Therese Kinsella
Journal:  Biochim Biophys Acta       Date:  2007-03-28

10.  Mapping phosphoproteins in Mycoplasma genitalium and Mycoplasma pneumoniae.

Authors:  Hsun-Cheng Su; Clyde A Hutchison; Morgan C Giddings
Journal:  BMC Microbiol       Date:  2007-07-02       Impact factor: 3.605
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