Literature DB >> 9399876

MHCPEP, a database of MHC-binding peptides: update 1997.

V Brusic1, G Rudy, L C Harrison.   

Abstract

MHCPEP (http://wehih.wehi.edu.au/mhcpep/) is a curated database comprising over 13 000 peptide sequences known to bind MHC molecules. Entries are compiled from published reports as well as from direct submissions of experimental data. Each entry contains the peptide sequence, its MHC specificity and where available, experimental method, observed activity, binding affinity, source protein and anchor positions, as well as publication references. The present format of the database allows text string matching searches but can easily be converted for use in conjunction with sequence analysis packages. The database can be accessed via Internet using WWW or FTP.

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Year:  1998        PMID: 9399876      PMCID: PMC147255          DOI: 10.1093/nar/26.1.368

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  13 in total

1.  Nomenclature for factors of the HLA system, 1995.

Authors:  J G Bodmer; S G Marsh; E D Albert; W F Bodmer; R E Bontrop; D Charron; B Dupont; H A Erlich; B Mach; W R Mayr
Journal:  Hum Immunol       Date:  1995-06       Impact factor: 2.850

2.  The PIR-International Protein Sequence Database.

Authors:  W C Barker; J S Garavelli; D H Haft; L T Hunt; C R Marzec; B C Orcutt; G Y Srinivasarao; L S Yeh; R S Ledley; H W Mewes; F Pfeiffer; A Tsugita
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

3.  The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

4.  MHCPEP, a database of MHC-binding peptides: update 1996.

Authors:  V Brusic; G Rudy; A P Kyne; L C Harrison
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

5.  Nomenclature for the major histocompatibility complexes of different species: a proposal.

Authors:  J Klein; R E Bontrop; R L Dawkins; H A Erlich; U B Gyllensten; E R Heise; P P Jones; P Parham; E K Wakeland; D I Watkins
Journal:  Immunogenetics       Date:  1990       Impact factor: 2.846

6.  SRS--an indexing and retrieval tool for flat file data libraries.

Authors:  T Etzold; P Argos
Journal:  Comput Appl Biosci       Date:  1993-02

7.  Strategies for identifying and predicting islet autoantigen T-cell epitopes in insulin-dependent diabetes mellitus.

Authors:  M C Honeyman; V Brusic; L C Harrison
Journal:  Ann Med       Date:  1997-10       Impact factor: 4.709

8.  Generation and phenotypic characterization of new human ovarian cancer cell lines with the identification of antigens potentially recognizable by HLA-restricted cytotoxic T cells.

Authors:  V Ramakrishna; D R Negri; V Brusic; R Fontanelli; S Canevari; G Bolis; C Castelli; G Parmiani
Journal:  Int J Cancer       Date:  1997-09-26       Impact factor: 7.396

9.  Specificity and promiscuity among naturally processed peptides bound to HLA-DR alleles.

Authors:  R M Chicz; R G Urban; J C Gorga; D A Vignali; W S Lane; J L Strominger
Journal:  J Exp Med       Date:  1993-07-01       Impact factor: 14.307

10.  A peptide-binding motif for I-A(g7), the class II major histocompatibility complex (MHC) molecule of NOD and Biozzi AB/H mice.

Authors:  L C Harrison; M C Honeyman; S Trembleau; S Gregori; F Gallazzi; P Augstein; V Brusic; J Hammer; L Adorini
Journal:  J Exp Med       Date:  1997-03-17       Impact factor: 14.307

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  49 in total

1.  FIMM, a database of functional molecular immunology.

Authors:  C Schönbach; J L Koh; X Sheng; L Wong; V Brusic
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  FIMM, a database of functional molecular immunology: update 2002.

Authors:  Christian Schönbach; Judice L Y Koh; Darren R Flower; Limsoon Wong; Vladimir Brusic
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  Predicting sequences and structures of MHC-binding peptides: a computational combinatorial approach.

Authors:  J Zen; H R Treutlein; G B Rudy
Journal:  J Comput Aided Mol Des       Date:  2001-06       Impact factor: 3.686

4.  Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles.

Authors:  Pedro A Reche; John-Paul Glutting; Hong Zhang; Ellis L Reinherz
Journal:  Immunogenetics       Date:  2004-09-03       Impact factor: 2.846

5.  Definition of supertypes for HLA molecules using clustering of specificity matrices.

Authors:  Ole Lund; Morten Nielsen; Can Kesmir; Anders Gorm Petersen; Claus Lundegaard; Peder Worning; Christina Sylvester-Hvid; Kasper Lamberth; Gustav Røder; Sune Justesen; Søren Buus; Søren Brunak
Journal:  Immunogenetics       Date:  2004-02-13       Impact factor: 2.846

6.  Proteomics in Vaccinology and Immunobiology: An Informatics Perspective of the Immunone.

Authors:  Irini A. Doytchinova; Paul Taylor; Darren R. Flower
Journal:  J Biomed Biotechnol       Date:  2003

7.  Human self-protein CD8+ T-cell epitopes are both positively and negatively selected.

Authors:  Michal Almani; Shai Raffaeli; Tal Vider-Shalit; Lea Tsaban; Vered Fishbain; Yoram Louzoun
Journal:  Eur J Immunol       Date:  2009-04       Impact factor: 5.532

8.  Predicting MHC class I epitopes in large datasets.

Authors:  Kirsten Roomp; Iris Antes; Thomas Lengauer
Journal:  BMC Bioinformatics       Date:  2010-02-17       Impact factor: 3.169

9.  Peptide binding predictions for HLA DR, DP and DQ molecules.

Authors:  Peng Wang; John Sidney; Yohan Kim; Alessandro Sette; Ole Lund; Morten Nielsen; Bjoern Peters
Journal:  BMC Bioinformatics       Date:  2010-11-22       Impact factor: 3.169

10.  Prediction of HLA-DQ8beta cell peptidome using a computational program and its relationship to autoreactive T cells.

Authors:  Kuan Y Chang; Emil R Unanue
Journal:  Int Immunol       Date:  2009-05-21       Impact factor: 4.823

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