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Literature DB >> 9399801

The non-redundant Bacillus subtilis (NRSub) database: update 1998.

Abstract

The non-redundant Bacillus subtilis database (NRSub) has been developed in the context of the sequencing project devoted to this bacterium. As this project has reached completion, the whole genome is now available as a single contig. Thanks to the ACNUC database management system and its associated retrieval system Query_win, each functional region of the genome can be accessed individually. Extra annotations have been added such as accession numbers for the genes, locations on the genetic map, codon adaptation index values, as well as cross-references with other collections. NRSub is distributed through anonymous FTP as a text file in EMBL format and as an ACNUC database. It is also possible to access NRSub through two dedicated World Wide Web servers located in France (http://acnuc. univ-lyon1.fr/nrsub/nrsub.html ) and in Japan (http://ddbjs4h.genes. nig.ac.jp/ ).

Entities: Species

Mesh：

Year: 1998 PMID： 9399801 PMCID： PMC147236 DOI： 10.1093/nar/26.1.60

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

18 in total

Review 1. The project of sequencing the entire Bacillus subtilis genome.

Authors: F Kunst; K Devine
Journal: Res Microbiol Date: 1991 Sep-Oct Impact factor: 3.992

2. The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.

Authors: P M Sharp; W H Li
Journal: Nucleic Acids Res Date: 1987-02-11 Impact factor: 16.971

3. The ENZYME data bank in 1995.

Authors: A Bairoch
Journal: Nucleic Acids Res Date: 1996-01-01 Impact factor: 16.971

4. Organization of the European Bacillus subtilis genome sequencing project.

Authors: F Kunst; A Vassarotti; A Danchin
Journal: Microbiology Date: 1995-02 Impact factor: 2.777

5. A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server.

Authors: R D Appel; A Bairoch; D F Hochstrasser
Journal: Trends Biochem Sci Date: 1994-06 Impact factor: 13.807

6. ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage.

Authors: M Gouy; C Gautier; M Attimonelli; C Lanave; G di Paola
Journal: Comput Appl Biosci Date: 1985-09

7. A proposal for a uniform nomenclature in bacterial genetics.

Authors: M Demerec; E A Adelberg; A J Clark; P E Hartman
Journal: Genetics Date: 1966-07 Impact factor: 4.562

Review 8. The Bacillus subtilis genome project: aims and progress.

Authors: K M Devine
Journal: Trends Biotechnol Date: 1995-06 Impact factor: 19.536

9. SubtiList: a relational database for the Bacillus subtilis genome.

Authors: I Moszer; P Glaser; A Danchin
Journal: Microbiology Date: 1995-02 Impact factor: 2.777

10. NRSub: a non-redundant data base for the Bacillus subtilis genome.

Authors: G Perrière; M Gouy; T Gojobori
Journal: Nucleic Acids Res Date: 1994-12-25 Impact factor: 16.971

2 in total

1. EMGLib: the enhanced microbial genomes library (update 2000).

Authors: G Perrière; P Bessières; B Labedan
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

2. Integrated databanks access and sequence/structure analysis services at the PBIL.

Authors: Guy Perrière; Christophe Combet; Simon Penel; Christophe Blanchet; Jean Thioulouse; Christophe Geourjon; Julien Grassot; Céline Charavay; Manolo Gouy; Laurent Duret; Gilbert Deléage
Journal: Nucleic Acids Res Date: 2003-07-01 Impact factor: 16.971

2 in total