| Literature DB >> 34945003 |
Clifford M Csizmar1, Antoine N Saliba2,3, Elizabeth M Swisher4, Scott H Kaufmann2,5,6.
Abstract
Despite recent discoveries and therapeutic advances in aggressive myeloid neoplasms, there remains a pressing need for improved therapies. For instance, in acute myeloid leukemia (AML), while most patients achieve a complete remission with conventional chemotherapy or the combination of a hypomethylating agent and venetoclax, de novo or acquired drug resistance often presents an insurmountable challenge, especially in older patients. Poly(ADP-ribose) polymerase (PARP) enzymes, PARP1 and PARP2, are involved in detecting DNA damage and repairing it through multiple pathways, including base excision repair, single-strand break repair, and double-strand break repair. In the context of AML, PARP inhibitors (PARPi) could potentially exploit the frequently dysfunctional DNA repair pathways that, similar to deficiencies in homologous recombination in BRCA-mutant disease, set the stage for cell killing. PARPi appear to be especially effective in AML with certain gene rearrangements and molecular characteristics (RUNX1-RUNX1T1 and PML-RARA fusions, FLT3- and IDH1-mutated). In addition, PARPi can enhance the efficacy of other agents, particularly alkylating agents, TOP1 poisons, and hypomethylating agents, that induce lesions ordinarily repaired via PARP1-dependent mechanisms. Conversely, emerging reports suggest that long-term treatment with PARPi for solid tumors is associated with an increased incidence of myelodysplastic syndrome (MDS) and AML. Here, we (i) review the pre-clinical and clinical data on the role of PARPi, specifically olaparib, talazoparib, and veliparib, in aggressive myeloid neoplasms and (ii) discuss the reported risk of MDS/AML with PARPi, especially as the indications for PARPi use expand to include patients with potentially curable cancer.Entities:
Keywords: DNA damage repair; PARP inhibitors; acute myeloid leukemia; base excision repair; myelodysplastic syndrome; myeloid neoplasms; non-homologous end-joining; secondary malignancies; synthetic lethality
Year: 2021 PMID: 34945003 PMCID: PMC8699275 DOI: 10.3390/cancers13246385
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.639
Figure 1Structure and Function of PARP1. PARP1 comprises a DNA-binding domain (DBD), automodification domain (AD), and catalytic domain (CAT). The DBD contains three zinc finger motifs (Zn) that recognize sites of DNA damage. A nuclear localization signal (NLS) retains PARP1 within the nucleus. The AD contains a BRCA1 carboxy-terminal (BRCT) domain that enables the recruitment and scaffolding of downstream proteins. The CAT houses a Trp-Gly-Arg (WGR) motif that stabilizes DNA binding as well as the His-Tyr-Glu (HYE) catalytic triad. Once bound to DNA, a conformational change activates the CAT to catalyze the poly(ADP)-ribosylation (PARylation) of PARP1 within the AD. PARylation proceeds by transferring ADP-ribose moieties from nicotinamide adenine dinucleotide (NAD+) to the acceptor polypeptide. The resulting pADPr chains recruit other DNA repair proteins; and PARylation of addition protein substrates helps elicit a variety of actions related to DNA repair, genomic maintenance, transcription, and cell cycle progression. Abbreviations: TOP1, DNA topoisomerase I; BER, base excision repair; HR, homologous recombination; Alt-EJ, alternative end-joining; NHEJ, non-homologous end-joining. Figure adapted from Rouleau, M. et al. [82].
Figure 2Proposed Mechanisms of Synthetic Lethality with PARP Inhibitors. (A) Inhibition of base excision repair (BER). Under physiologic conditions, DNA single-strand breaks (SSBs) are repaired via BER in a process that depends on PARP enzymes. When PARP is inhibited, SSBs can be converted to double-strand breaks (DSBs), which can be repaired through homologous recombination (HR). In cells with deficient HR mechanisms—such as inactivating mutations in BRCA1/2 or RAD51—concurrent PARP inhibition renders the cells incapable of performing high-fidelity repair. Thus, DNA damage accumulates, ultimately leading to cell death. (B) PARP trapping. PARP catalytic activity is required for the auto-modification of PARP1 with covalently bound pADPr groups (PARylation). This automodification both recruits other proteins and decreases the affinity of PARP for the damaged DNA. PARP inhibitors (PARPi) impair PARylation, rendering PARP1 and PARP2 unable to efficiently dissociate from damaged DNA. This “traps” PARP on the DNA and impairs the recruitment and assembly of downstream repair machinery. (C) Impaired BRCA1 recruitment. PARP is also present at sites of DSBs, where PARP automodification recruits the BARD1/BRCA1 complex. By inhibiting PARylation, PARPi prevent effective recruitment of BRCA1 and thus impede HR. (D) Activation of non-homologous end-joining (NHEJ). PARP automodification favors HR by recruiting members of the MRN (MRE11, RAD51, NBS1) complex and BRCA1/2 proteins, which compete with the proteins Ku70 and Ku80 that facilitate error-prone NHEJ. PARP inhibition derepresses NHEJ by preventing the rapid recruitment of HR proteins and allowing recruitment of Ku70 and Ku80, thereby permitting error-prone NHEJ and expediting the accumulation of lethal genomic alterations. (E) Defective Polθ recruitment. PARP1 activity recruits the MRN complex and Polθ to promote microhomology-mediated repair via alternative end-joining. HR-deficient tumors are heavily reliant on Polθ activity, and PARP inhibition impairs effective recruitment to DSBs. (F) Destabilization of stalled replication forks (RFs). BRCA2 helps stabilize and rescue stalled RFs by enabling homology-driven repair to bypass the obstructing lesion. Loss of BRCA2 leads to reliance on PARP activity for stabilization of stalled RFs. PARPi prevent this stabilization to promote PTIP (PAX transcription activation domain interacting protein) and MRE11-mediated RF resection and genomic instability. The final common pathway of all mechanisms is the accumulation of unrepaired DNA damage, resultant loss of genomic integrity, and ultimately, cell death.
Figure 3FDA-Approved and Clinically Advanced PARP Inhibitors. The panel inset depicts nicotinamide (blue) and its highly conserved interactions with PARP1-4, including hydrogen bonds with serine 904 and glycine 863 and a prominent π-stacking interaction with tyrosine 907 (using PARP1 amino acid numbers). The FDA-approved PARPi olaparib, talazoparib, rucaparib, and niraparib as well as the clinically advanced inhibitors veliparib and pamiparib are compared. The nicotinamide motif of each inhibitor is depicted in blue. The reported IC50 values for inhibition of purified PARP1 enzymatic activity are also provided.
Preclinical Results of PARP Inhibitor Monotherapy in Defined Molecular Subtypes of Myeloid Neoplasms.
| Disease | Genotype(s) | Phenotype | Results of PARPi Monotherapy | Ref(s) |
|---|---|---|---|---|
| AML | Upregulation of RAD51 via STAT5 activation. | Modest anti-leukemic activity seen with PARPi monotherapy in cell lines. | [ | |
| AML | Increased 2HG inhibits KDM4A/B, ALKBH, ATR, and ATM to induce HRD and DSB persistence. | Primary | [ | |
| AML | Downregulation of DNA repair genes, including | Reduced colony-forming potential in RUNX1-RUNX1T1 transformed primary cells and patient-derived cell-lines. | [ | |
| AML | Cohesin ( | High dependency on DDR pathways. | AML (including | [ |
| APL | Reduced | Reduced colony-forming potential in | [ | |
| CML | Reduced translation of | Increased DSBs and reduced clonogenic potential of imatinib-refractory CML cell lines and primary samples, including under hypoxic conditions mimicking the bone marrow microenvironment. | [ | |
| MLL |
| High burden of oxidative DNA damage. | [ | |
| MPN | JAK2 (V617F) | Reduced formation of RAD51 foci. | Modest in vitro sensitivity across several MPN cell lines, though sensitivity of primary MPN samples was variable. | [ |
Abbreviations: 2HG, 2-hydroxyglutarate; ATO, arsenic trioxide; DDR, DNA damage response; MDS, myelodysplastic syndrome; PARPi, PARP inhibitor; Ref, reference.
Pre-Clinical Results of PARP Inhibitor Combination Therapy in Myeloid Neoplasms.
| Class | Agent(s) | PARPi(s) | Mechanism(s) | Results of Combination Therapy | Ref(s) |
|---|---|---|---|---|---|
| Alkylating agents | Temozolomide | Olaparib | Temozolomide induced abasic sites and resultant SSBs. | PARPi showed synergy with temozolomide (CI < 0.3) and busulfan (CI 0.40–0.55) in vitro. | [ |
| Conventional chemotherapy | Doxorubicin | Olaparib | Increased abundance and phosphorylation of H2AX and CHK1. | Increased PARPi sensitivity in vitro with accumulation of DNA damage, replication arrest, and apoptosis. Synergistic cytotoxicity against primary IDH1/2-mutant AML cells associated with | [ |
| Topoisomerase | Camptothecin | Olaparib | Camptothecin-induced DNA lesions induce replication fork stalling, which depend in part on PARP1 for restart. | PARPi treatment was synergistic with camptothecin (CI < 0.3) in vitro; no increase in PARP/DNA complexes was detected using an insensitive assay, but genetic studies suggest a key role for PARP trapping. | [ |
| DNMT | Decitabine | Olaparib | Downregulation of | Decitabine plus olaparib was synthetically lethal in a large panel of AML cell lines, with synergy driven by PARPi-mediated inhibition of XRCC1 recruitment. | [ |
| HDAC | Entinostat | PJ34 | Induced DNA damage, phosphorylation of H2AX and ATM, and ultimately apoptosis. | HDAC inhibition enhanced PARP trapping, and co-treatment with a PARPi significantly increased apoptosis in AML cell lines. | [ |
| JAK2 | Ruxolitinib | Olaparib | Impaired BRCA-mediated HR and DNA-PK-mediated NHEJ, thereby increasing sensitivity to PARP inhibition. | Ruxolitinib enhanced PARPi sensitivity in both MPN cell lines and primary samples with synergistic cytotoxicity in vitro. | [ |
| BCR-ABL | Imatinib | Talazoparib | Downregulation of RAD51 and LIG4 to impair HR and NHEJ, respectively | Induction of DSBs and reduced clonogenic potential of imatinib-refractory CML cell lines and primary samples. | [ |
| FLT3-ITD | Quizartinib | Olaparib | Downregulation of BRCA1/2, PALB2, RAD51, and LIG4 impairs HR and NHEJ to induce HRD. | Combination therapy exhibited synergistic activity against proliferating and quiescent leukemic stem/progenitor cells, eliminating both from primary AML samples. | [ |
| WEE1 | AZD1775 | Olaparib | Inhibition of WEE1 impairs HR by indirectly inhibiting BRCA2. | Mild synergy between WEE1 and PARP inhibition was seen in cell lines harboring | [ |
| TRAIL | rTRAIL | Olaparib | PARPi upregulate TNFRSF6 and TNFRSF10B expression via potentiation of the Sp1 transcription factor and NF-kB, increasing sensitivity to TRAIL. | Both olaparib and veliparib enhanced the sensitivity of myeloid cell lines to TRAIL in vitro. | [ |
| Antibody drug conjugates | Gemtuzumab ozogamicin | Olaparib | Calicheamicin induces both SSBs and DSBs, invoking PARP activation. | The IC50 value for GO was reduced from 24 to 13 ng/mL when combined with olaparib; the CI was 0.86, indicating synergistic cytotoxicity. | [ |
Abbreviations: 5-FU, 5-fluorouracil; CI, cooperativity index; DSB, double strand break; GO, gentuzumab ozogamicin; LSC, leukemia stem cell; PARPi, PARP inhibitor(s); Ref, reference; rTRAIL, recombinant TNF-related apoptosis-inducing ligand; SSB: single strand break; TKI, tyrosine kinase inhibitor.
Published Clinical Trials of PARP Inhibitors in Hematologic Malignancies.
| Trial | Year | Intervention(s) | Phase | Disease(s) a | N | CRR | ORR | OS b | Ref |
|---|---|---|---|---|---|---|---|---|---|
| NCT01399840 | 2014 | Talazoparib | I | AML/MDS | 25 | 0% | 0% | N/A | [ |
| NCT01139970 | 2017 | Veliparib + Temozolomide | I | AML | 48 | 17% | 33% | 5.3 | [ |
| NCT00588991 | 2017 | Veliparib + Topotecan ± Carboplatin | I | AML, MPN, CMML | 99 | 14% | 33% | 15.3 c | [ |
| ISRCTN34386131 | 2017 | Olaparib | I | CLL, MCL, T-PLL | 15 | 0% | 0% | 4.3 | [ |
a All disease groups are relapsed/refractory unless otherwise specified. b Overall survival reported as median months. c For patients who responded to therapy. Abbreviations: AML, acute myeloid leukemia; CLL, chronic lymphocytic leukemia; CMML, chronic myelomonocytic leukemia; CRR, complete response rate; MDS, myelodysplastic syndrome; MCL, mantle cell lymphoma; MPN: myeloproliferative neoplasm; N, number of patients; ORR, overall response rate; OS, overall survival; Ref, reference(s).
Current Clinical Trials of PARP Inhibitors in Myeloid Neoplasms.
| Trial | Phase | Intervention(s) | Population(s) a | Status |
|---|---|---|---|---|
| NCT03289910 | II | Topotecan + Carboplatin ± Veliparib | AML, MDS, MPN, CMML | Active (not recruiting) |
| NCT02878785 | I/II | Talazoparib + Decitabine | AML (phase I) | Active (not recruiting) |
| NCT03953898 | II | Olaparib | IDH1/2-mutant AML/MDS | Recruiting |
| NCT03974217 | I | Talazoparib | Cohesin-mutant AML/MDS | Recruiting |
a All disease groups are relapsed/refractory unless otherwise specified. Abbreviations: AML, acute myeloid leukemia; CLL, chronic lymphocytic leukemia; CMML, chronic myelomonocytic leukemia; MDS, myelodysplastic syndrome; MCL, mantle cell lymphoma; MPN: myeloproliferative neoplasm; T-PLL, T-prolymphocytic leukemia.
Recent Studies of Therapy-Related Myeloid Neoplasms with PARP Inhibitors.
| Authors | N | PARPi | Myeloid Neoplasm | SOT | Karyotype | NGS | SOT Status at | Median OS |
|---|---|---|---|---|---|---|---|---|
| Martin et al. [ | 20 | Olaparib (94%) | AML (45%) | Ovarian | 95% complex | DDR pathway mutations in 83% | 55% in CR | 4.3 months |
| Kwan et al. [ | 22 | Rucaparib | AML 41% | Ovarian | 53% complex; 80% with chrom. 5 or 7 alteration | NR | NR | NR |
| Morice et al. [ | 178 | Olaparib (75%) | AML (44%) | Ovarian (85%) | NR | NR | Response (85%) | NR |
N, number of patients; AML, acute myeloid leukemia; chrom., chromosome; CR, complete remission; DDR, DNA damage response; MDS, myelodysplastic syndrome; SOT, solid organ tumor; NGS, next generation sequencing; OS, overall survival; NR, not reported. * Two patients (9%) presented with MDS and progressed to AML.