Literature DB >> 21541742

Σ-holes, π-holes and electrostatically-driven interactions.

Jane S Murray1, Pat Lane, Timothy Clark, Kevin E Riley, Peter Politzer.   

Abstract

A positive π-hole is a region of positive electrostatic potential that is perpendicular to a portion of a molecular framework. It is the counterpart of a σ-hole, which is along the extension of a covalent bond to an atom. Both σ-holes and π-holes become more positive (a) in going from the lighter to the heavier atoms in a given Group of the periodic table, and (b) as the remainder of the molecule is more electron-withdrawing. Positive σ- and π-holes can interact in a highly directional manner with negative sites, e.g., the lone pairs of Lewis bases. In this work, the complexes of 13 π-hole-containing molecules with the nitrogen lone pairs of HCN and NH(3) have been characterized computationally using the MP2, M06-2X and B3PW91 procedures. While the electrostatic interaction is a major driving force in π-hole bonding, a gradation is found from weakly noncovalent to considerably stronger with possible indications of some degree of coordinate covalency.

Entities:  

Mesh:

Year:  2011        PMID: 21541742     DOI: 10.1007/s00894-011-1089-1

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  16 in total

Review 1.  Average local ionization energy: A review.

Authors:  Peter Politzer; Jane S Murray; Felipe A Bulat
Journal:  J Mol Model       Date:  2010-04-22       Impact factor: 1.810

2.  Quantitative analysis of molecular surfaces: areas, volumes, electrostatic potentials and average local ionization energies.

Authors:  Felipe A Bulat; Alejandro Toro-Labbé; Tore Brinck; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2010-04-02       Impact factor: 1.810

3.  Semiempirical GGA-type density functional constructed with a long-range dispersion correction.

Authors:  Stefan Grimme
Journal:  J Comput Chem       Date:  2006-11-30       Impact factor: 3.376

4.  Assessment of the MP2 method, along with several basis sets, for the computation of interaction energies of biologically relevant hydrogen bonded and dispersion bound complexes.

Authors:  Kevin E Riley; Pavel Hobza
Journal:  J Phys Chem A       Date:  2007-07-25       Impact factor: 2.781

5.  Blue shifts vs red shifts in sigma-hole bonding.

Authors:  Jane S Murray; Monica C Concha; Pat Lane; Pavel Hobza; Peter Politzer
Journal:  J Mol Model       Date:  2008-04-26       Impact factor: 1.810

6.  Halogen bond tunability I: the effects of aromatic fluorine substitution on the strengths of halogen-bonding interactions involving chlorine, bromine, and iodine.

Authors:  Kevin E Riley; Jane S Murray; Jindřich Fanfrlík; Jan Rezáč; Ricardo J Solá; Monica C Concha; Felix M Ramos; Peter Politzer
Journal:  J Mol Model       Date:  2011-03-04       Impact factor: 1.810

7.  Halogen bonding: the sigma-hole. Proceedings of "Modeling interactions in biomolecules II", Prague, September 5th-9th, 2005.

Authors:  Timothy Clark; Matthias Hennemann; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2006-08-23       Impact factor: 1.810

8.  Halogen bonds in biological molecules.

Authors:  Pascal Auffinger; Franklin A Hays; Eric Westhof; P Shing Ho
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-19       Impact factor: 11.205

9.  Expansion of the sigma-hole concept.

Authors:  Jane S Murray; Pat Lane; Peter Politzer
Journal:  J Mol Model       Date:  2008-12-11       Impact factor: 1.810

10.  Br···O Complexes as Probes of Factors Affecting Halogen Bonding: Interactions of Bromobenzenes and Bromopyrimidines with Acetone.

Authors:  Kevin E Riley; Jane S Murray; Peter Politzer; Monica C Concha; Pavel Hobza
Journal:  J Chem Theory Comput       Date:  2008-12-18       Impact factor: 6.006

View more
  72 in total

1.  π-Hole interaction: a theoretical insight into the mechanism of SO2 captured by [Et 2NEMim][Tetz] ionic liquids.

Authors:  Dongmei Du; Aiping Fu; Mei Qin; Zheng-Yu Zhou; Xiao Zhu
Journal:  J Mol Model       Date:  2015-07-28       Impact factor: 1.810

2.  Topological insights into the 1/1 diacetyl/water complex gained using a new methodological approach.

Authors:  D Dargent; E L Zins; B Madebène; M E Alikhani
Journal:  J Mol Model       Date:  2015-07-30       Impact factor: 1.810

3.  Theoretical study of the cooperative effects between the triel bond and the pnicogen bond in BF3···NCXH2···Y (X = P, As, Sb; Y = H2O, NH3) complexes.

Authors:  Ming-Xiu Liu; Hong-Ying Zhuo; Qing-Zhong Li; Wen-Zuo Li; Jian-Bo Cheng
Journal:  J Mol Model       Date:  2015-12-16       Impact factor: 1.810

4.  Tuning of chalcogen bonds by cation-π interactions: cooperative and diminutive effects.

Authors:  Mehdi D Esrafili; Nasibeh Saeidi; Mohammad Solimannejad
Journal:  J Mol Model       Date:  2015-11-03       Impact factor: 1.810

5.  CNXeCl and CNXeBr species as halogen bond donors: a quantum chemical study on the structure, properties, and nature of halogen···nitrogen interactions.

Authors:  Mehdi D Esrafili; Parisa Juyban
Journal:  J Mol Model       Date:  2014-03-29       Impact factor: 1.810

6.  Hydrogen bonds and other interactions as a response to protect doublet/octet electron structure.

Authors:  Sławomir J Grabowski
Journal:  J Mol Model       Date:  2018-01-08       Impact factor: 1.810

7.  Revealing substitution effects on the strength and nature of halogen-hydride interactions: a theoretical study.

Authors:  Mehdi D Esrafili; Mohammad Solimannejad
Journal:  J Mol Model       Date:  2013-06-23       Impact factor: 1.810

8.  Influence of halogen atom substitution and neutral HCN/anion CN- Lewis base on the triel-bonding interactions.

Authors:  Yuchun Li; Xiaoting Wang; Hui Wang; Yuxiang Ni; Hongyan Wang
Journal:  J Mol Model       Date:  2021-02-23       Impact factor: 1.810

9.  Discovery of σ-hole interactions involving ylides.

Authors:  Jiannan Ji; Yanli Zeng; Xueying Zhang; Shijun Zheng; Lingpeng Meng
Journal:  J Mol Model       Date:  2013-09-17       Impact factor: 1.810

10.  Insights into the strength and nature of carbene···halogen bond interactions: a theoretical perspective.

Authors:  Mehdi D Esrafili; Nafiseh Mohammadirad
Journal:  J Mol Model       Date:  2013-03-02       Impact factor: 1.810

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.