Literature DB >> 26840433

Computer Modeling of Halogen Bonds and Other σ-Hole Interactions.

Michal H Kolář1,2, Pavel Hobza1,3.   

Abstract

In the field of noncovalent interactions a new paradigm has recently become popular. It stems from the analysis of molecular electrostatic potentials and introduces a label, which has recently attracted enormous attention. The label is σ-hole, and it was first used in connection with halogens. It initiated a renaissance of interest in halogenated compounds, and later on, when found also on other groups of atoms (chalcogens, pnicogens, tetrels and aerogens), it resulted in a new direction of research of intermolecular interactions. In this review, we summarize advances from about the last 10 years in understanding those interactions related to σ-hole. We pay particular attention to theoretical and computational techniques, which play a crucial role in the field.

Entities:  

Year:  2016        PMID: 26840433     DOI: 10.1021/acs.chemrev.5b00560

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  57 in total

1.  Benchmarking DFT methods with small basis sets for the calculation of halogen-bond strengths.

Authors:  Antti Siiskonen; Arri Priimagi
Journal:  J Mol Model       Date:  2017-02-04       Impact factor: 1.810

2.  Co-operativity in non-covalent interactions in ternary complexes: a comprehensive electronic structure theory based investigation.

Authors:  Shyam Vinod Kumar Panneer; Mahesh Kumar Ravva; Brijesh Kumar Mishra; Venkatesan Subramanian; Narayanasami Sathyamurthy
Journal:  J Mol Model       Date:  2018-08-29       Impact factor: 1.810

3.  Exploring the Role of N6-Substituents in Potent Dual Acting 5'-C-Ethyltetrazolyladenosine Derivatives: Synthesis, Binding, Functional Assays, and Antinociceptive Effects in Mice ∇.

Authors:  Riccardo Petrelli; Mirko Scortichini; Sonja Kachler; Serena Boccella; Carmen Cerchia; Ilaria Torquati; Fabio Del Bello; Daniela Salvemini; Ettore Novellino; Livio Luongo; Sabatino Maione; Kenneth A Jacobson; Antonio Lavecchia; Karl-Norbert Klotz; Loredana Cappellacci
Journal:  J Med Chem       Date:  2017-05-05       Impact factor: 7.446

Review 4.  Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications.

Authors:  Anders S Christensen; Tomáš Kubař; Qiang Cui; Marcus Elstner
Journal:  Chem Rev       Date:  2016-04-13       Impact factor: 60.622

5.  Alchemical Binding Free Energy Calculations in AMBER20: Advances and Best Practices for Drug Discovery.

Authors:  Tai-Sung Lee; Bryce K Allen; Timothy J Giese; Zhenyu Guo; Pengfei Li; Charles Lin; T Dwight McGee; David A Pearlman; Brian K Radak; Yujun Tao; Hsu-Chun Tsai; Huafeng Xu; Woody Sherman; Darrin M York
Journal:  J Chem Inf Model       Date:  2020-09-16       Impact factor: 4.956

6.  Are beryllium-containing biphenyl derivatives efficient anion sponges?

Authors:  Oriana Brea; Otilia Mó; Manuel Yáñez; M Merced Montero-Campillo; Ibon Alkorta; José Elguero
Journal:  J Mol Model       Date:  2017-12-18       Impact factor: 1.810

7.  Exploring the (Very Flat) Potential Energy Landscape of R-Br⋅⋅⋅π Interactions with Accurate CCSD(T) and SAPT Techniques.

Authors:  Kevin E Riley; Mariela Vazquez; Cole Umemura; Christopher Miller; Khanh-An Tran
Journal:  Chemistry       Date:  2016-10-27       Impact factor: 5.236

8.  The roles of charge transfer and polarization in non-covalent interactions: a perspective from ab initio valence bond methods.

Authors:  Yirong Mo; David Danovich; Sason Shaik
Journal:  J Mol Model       Date:  2022-08-25       Impact factor: 2.172

9.  Strength, character, and directionality of halogen bonds involving cationic halogen bond donors.

Authors:  Kevin E Riley; Khanh-An Tran
Journal:  Faraday Discuss       Date:  2017-10-13       Impact factor: 4.008

10.  Multi-phase Boltzmann weighting: accounting for local inhomogeneity in molecular simulations of water-octanol partition coefficients in the SAMPL6 challenge.

Authors:  Andreas Krämer; Phillip S Hudson; Michael R Jones; Bernard R Brooks
Journal:  J Comput Aided Mol Des       Date:  2020-02-14       Impact factor: 3.686

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