Literature DB >> 20361346

Quantitative analysis of molecular surfaces: areas, volumes, electrostatic potentials and average local ionization energies.

Felipe A Bulat1, Alejandro Toro-Labbé, Tore Brinck, Jane S Murray, Peter Politzer.   

Abstract

We describe a procedure for performing quantitative analyses of fields f(r) on molecular surfaces, including statistical quantities and locating and evaluating their local extrema. Our approach avoids the need for explicit mathematical representation of the surface and can be implemented easily in existing graphical software, as it is based on the very popular representation of a surface as collection of polygons. We discuss applications involving the volumes, surface areas and molecular surface electrostatic potentials, and local ionization energies of a group of 11 molecules.

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Year:  2010        PMID: 20361346     DOI: 10.1007/s00894-010-0692-x

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  12 in total

1.  Quantitative analysis of molecular surfaces: areas, volumes, electrostatic potentials and average local ionization energies.

Authors:  Felipe A Bulat; Alejandro Toro-Labbé; Tore Brinck; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2010-04-02       Impact factor: 1.810

2.  Crystal density predictions for nitramines based on quantum chemistry.

Authors:  Ling Qiu; Heming Xiao; Xuedong Gong; Xuehai Ju; Weihua Zhu
Journal:  J Hazard Mater       Date:  2006-07-08       Impact factor: 10.588

3.  Sigma-hole bonding between like atoms; a fallacy of atomic charges.

Authors:  Peter Politzer; Jane S Murray; Monica C Concha
Journal:  J Mol Model       Date:  2008-03-04       Impact factor: 1.810

4.  The interpretation of protein structures: estimation of static accessibility.

Authors:  B Lee; F M Richards
Journal:  J Mol Biol       Date:  1971-02-14       Impact factor: 5.469

5.  Electrostatic potential molecular surfaces.

Authors:  P K Weiner; R Langridge; J M Blaney; R Schaefer; P A Kollman
Journal:  Proc Natl Acad Sci U S A       Date:  1982-06       Impact factor: 11.205

6.  Solvent-accessible surfaces of proteins and nucleic acids.

Authors:  M L Connolly
Journal:  Science       Date:  1983-08-19       Impact factor: 47.728

7.  Halogen bonds in biological molecules.

Authors:  Pascal Auffinger; Franklin A Hays; Eric Westhof; P Shing Ho
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-19       Impact factor: 11.205

8.  Why are dimethyl sulfoxide and dimethyl sulfone such good solvents?

Authors:  Timothy Clark; Jane S Murray; Pat Lane; Peter Politzer
Journal:  J Mol Model       Date:  2008-05-06       Impact factor: 1.810

9.  Expansion of the sigma-hole concept.

Authors:  Jane S Murray; Pat Lane; Peter Politzer
Journal:  J Mol Model       Date:  2008-12-11       Impact factor: 1.810

10.  Br···O Complexes as Probes of Factors Affecting Halogen Bonding: Interactions of Bromobenzenes and Bromopyrimidines with Acetone.

Authors:  Kevin E Riley; Jane S Murray; Peter Politzer; Monica C Concha; Pavel Hobza
Journal:  J Chem Theory Comput       Date:  2008-12-18       Impact factor: 6.006

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  131 in total

1.  Theoretical study on novel nitrogen-rich energetic compounds of bis(amino)-azobis(azoles) with tetrazene unit.

Authors:  Zhi-Min Li; Dan-Dan Zeng; Jian-Guo Zhang; Xiao-Qing Niu; Tian-Tian Man; Shao-Wen Zhang; Tong-Lai Zhang
Journal:  J Mol Model       Date:  2012-06-02       Impact factor: 1.810

2.  Design and selection of nitrogen-rich bridged di-1,3,5-triazine derivatives with high energy and reduced sensitivity.

Authors:  Yong Pan; Weihua Zhu; Heming Xiao
Journal:  J Mol Model       Date:  2012-01-03       Impact factor: 1.810

3.  Molecular mechanical perspective on halogen bonding.

Authors:  Mahmoud A A Ibrahim
Journal:  J Mol Model       Date:  2012-05-30       Impact factor: 1.810

4.  Quantitative analysis of molecular surfaces: areas, volumes, electrostatic potentials and average local ionization energies.

Authors:  Felipe A Bulat; Alejandro Toro-Labbé; Tore Brinck; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2010-04-02       Impact factor: 1.810

5.  Halogen bond tunability II: the varying roles of electrostatic and dispersion contributions to attraction in halogen bonds.

Authors:  Kevin E Riley; Jane S Murray; Jindřich Fanfrlík; Jan Rezáč; Ricardo J Solá; Monica C Concha; Felix M Ramos; Peter Politzer
Journal:  J Mol Model       Date:  2012-05-29       Impact factor: 1.810

6.  Synergistic and diminutive effects between halogen bond and lithium bond in complexes involving aromatic compounds.

Authors:  Mingxiu Liu; Mengyang Cai; Qingzhong Li; Wenzuo Li; Jianbo Cheng
Journal:  J Mol Model       Date:  2015-09-14       Impact factor: 1.810

7.  Theoretical study of the cooperative effects between the triel bond and the pnicogen bond in BF3···NCXH2···Y (X = P, As, Sb; Y = H2O, NH3) complexes.

Authors:  Ming-Xiu Liu; Hong-Ying Zhuo; Qing-Zhong Li; Wen-Zuo Li; Jian-Bo Cheng
Journal:  J Mol Model       Date:  2015-12-16       Impact factor: 1.810

8.  Influence of the nature of hydrogen halides and metal cations on the interaction types between borazine and hydrogen halides.

Authors:  Hongying Zhuo; Qingzhong Li; Xiulin An; Wenzuo Li; Jianbo Cheng
Journal:  J Mol Model       Date:  2014-02-14       Impact factor: 1.810

9.  Exploring surface reactivity of phosphorous-doped (6,0) and (4,4) BC3 nanotubes: a DFT study.

Authors:  Mohammad Alizadeh; Mehdi D Esrafili; Esmail Vessally
Journal:  J Mol Model       Date:  2013-09-17       Impact factor: 1.810

10.  Discovery of σ-hole interactions involving ylides.

Authors:  Jiannan Ji; Yanli Zeng; Xueying Zhang; Shijun Zheng; Lingpeng Meng
Journal:  J Mol Model       Date:  2013-09-17       Impact factor: 1.810

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