Literature DB >> 11866602

Quantitative evaluation of weak nonbonded Se...F interactions and their remarkable nature as orbital interactions.

Michio Iwaoka1, Hiroto Komatsu, Takayuki Katsuda, Shuji Tomoda.   

Abstract

To evaluate weak intramolecular nonbonded Se...F interactions recently characterized for a series of o-selenobenzyl fluoride derivatives (Iwaoka et al., Chem. Lett. 1998, 969-970), the temperature dependence of the nuclear spin coupling between Se and F (J(Se...F)) was investigated for 2-(fluoromethyl)phenylselenenyl cyanate (1a) and bis[2-(fluoromethyl)phenyl] diselenide (1e) in CD2Cl2 and CD3CN. A significant increase in the magnitude of J(Se...F) was observed for both 1a and 1e upon lowering temperature, whereas the values of J(Se...F) for the corresponding trifluoromethyl compounds slightly reduced or remained unchanged at low temperatures. Application of the rapid equilibrium model between two possible conformers revealed that conformer A with an intramolecular Se...F interaction is more stable in enthalpy (DeltaH) by 1.23 kcal/mol for 1a (in CD2Cl2) and by 0.85 and 0.83 kcal/mol for 1e (in CD2Cl2 and CD3CN, respectively) than conformer B, which does not have close Se...F contact. The negligible solvent effects for 1e suggested marginal electrostatic nature of the Se...F interactions. Instead, importance of the n(F) -->sigma*(Se-X) orbital interaction was suggested by quantum chemical (QC) calculations and the natural bond orbital (NBO) analysis.

Entities:  

Year:  2002        PMID: 11866602     DOI: 10.1021/ja016348r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

1.  Sigma-hole bonding: molecules containing group VI atoms.

Authors:  Jane S Murray; Pat Lane; Timothy Clark; Peter Politzer
Journal:  J Mol Model       Date:  2007-07-24       Impact factor: 1.810

2.  Sigma-hole bonding between like atoms; a fallacy of atomic charges.

Authors:  Peter Politzer; Jane S Murray; Monica C Concha
Journal:  J Mol Model       Date:  2008-03-04       Impact factor: 1.810

3.  Fluorine bonding enhances the energetics of protein-lipid binding in the gas phase.

Authors:  Lan Liu; Nobar Jalili; Alyson Baergen; Simon Ng; Justin Bailey; Ratmir Derda; John S Klassen
Journal:  J Am Soc Mass Spectrom       Date:  2014-05       Impact factor: 3.109

4.  Blue shifts vs red shifts in sigma-hole bonding.

Authors:  Jane S Murray; Monica C Concha; Pat Lane; Pavel Hobza; Peter Politzer
Journal:  J Mol Model       Date:  2008-04-26       Impact factor: 1.810

5.  Co+-H interaction inspired alternate coordination geometries of biologically important cob(I)alamin: possible structural and mechanistic consequences for methyltransferases.

Authors:  Manoj Kumar; Hajime Hirao; Pawel M Kozlowski
Journal:  J Biol Inorg Chem       Date:  2012-08-08       Impact factor: 3.358

6.  Why are dimethyl sulfoxide and dimethyl sulfone such good solvents?

Authors:  Timothy Clark; Jane S Murray; Pat Lane; Peter Politzer
Journal:  J Mol Model       Date:  2008-05-06       Impact factor: 1.810

7.  Carbon-Halogen Bond Activation by Selenium-Based Chalcogen Bonding.

Authors:  Patrick Wonner; Lukas Vogel; Maximilian Düser; Luís Gomes; Florian Kniep; Bert Mallick; Daniel B Werz; Stefan M Huber
Journal:  Angew Chem Int Ed Engl       Date:  2017-07-06       Impact factor: 15.336

8.  Catalytic Carbon-Chlorine Bond Activation by Selenium-Based Chalcogen Bond Donors.

Authors:  Patrick Wonner; Lukas Vogel; Florian Kniep; Stefan M Huber
Journal:  Chemistry       Date:  2017-11-14       Impact factor: 5.236

9.  Comparison between Tetrel Bonded Complexes Stabilized by σ and π Hole Interactions.

Authors:  Wiktor Zierkiewicz; Mariusz Michalczyk; Steve Scheiner
Journal:  Molecules       Date:  2018-06-11       Impact factor: 4.411

10.  Reconciling Electrostatic and n→π* Orbital Contributions in Carbonyl Interactions.

Authors:  Kamila B Muchowska; Dominic J Pascoe; Stefan Borsley; Ivan V Smolyar; Ioulia K Mati; Catherine Adam; Gary S Nichol; Kenneth B Ling; Scott L Cockroft
Journal:  Angew Chem Int Ed Engl       Date:  2020-07-01       Impact factor: 15.336

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