Literature DB >> 31069527

On the ability of pnicogen atoms to engage in both σ and π-hole complexes. Heterodimers of ZF2C6H5 (Z = P, As, Sb, Bi) and NH3.

Wiktor Zierkiewicz1, Mariusz Michalczyk2, Rafał Wysokiński2, Steve Scheiner3.   

Abstract

When bound to a pair of F atoms and a phenyl ring, a pyramidal pnicogen (Z) atom can form a pnicogen bond wherein an NH3 base lies opposite one F atom. In addition to this σ-hole complex, the ZF2C6H5 molecule can distort in such a way that the NH3 approaches on the opposite side to the lone pair on Z, where there is a so-called π-hole. The interaction energies of these π-hole dimers are roughly 30 kcal/mol, much larger than the equivalent quantities for the σ-hole complexes, which are only 4-13 kcal/mol. On the other hand, this large interaction energy is countered by the considerable deformation energy required for the Lewis acid to adopt the geometry necessary to form the π-hole complex. The overall energetics of the complexation reaction are thus more exothermic for the σ-hole dimers than for the π-hole dimers.

Entities:  

Keywords:  AIM; Deformation energy; IR spectra; MEP; NBO; Pnicogen bond

Year:  2019        PMID: 31069527     DOI: 10.1007/s00894-019-4031-6

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  61 in total

1.  Noncovalent interactions: a challenge for experiment and theory.

Authors:  K Müller-Dethlefs; P Hobza
Journal:  Chem Rev       Date:  2000-01-12       Impact factor: 60.622

2.  Toward self-organization and complex matter.

Authors:  Jean-Marie Lehn
Journal:  Science       Date:  2002-03-29       Impact factor: 47.728

3.  Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: Design and assessment of accuracy.

Authors:  Florian Weigend; Reinhart Ahlrichs
Journal:  Phys Chem Chem Phys       Date:  2005-08-04       Impact factor: 3.676

4.  Accurate Coulomb-fitting basis sets for H to Rn.

Authors:  Florian Weigend
Journal:  Phys Chem Chem Phys       Date:  2006-01-03       Impact factor: 3.676

5.  Synthesis and Structures of Intramolecularly Base-Coordinated Group 15 Aryl Halides.

Authors:  Claire J. Carmalt; Alan H. Cowley; Robert D. Culp; Richard A. Jones; Smuruthi Kamepalli; Nicholas C. Norman
Journal:  Inorg Chem       Date:  1997-06-18       Impact factor: 5.165

Review 6.  Noncovalent interactions with DNA: an overview.

Authors:  Lucjan Strekowski; Beth Wilson
Journal:  Mutat Res       Date:  2007-03-24       Impact factor: 2.433

7.  Sigma-hole bonding: molecules containing group VI atoms.

Authors:  Jane S Murray; Pat Lane; Timothy Clark; Peter Politzer
Journal:  J Mol Model       Date:  2007-07-24       Impact factor: 1.810

8.  An overview of halogen bonding.

Authors:  Peter Politzer; Pat Lane; Monica C Concha; Yuguang Ma; Jane S Murray
Journal:  J Mol Model       Date:  2006-09-30       Impact factor: 1.810

9.  Halogen bonding: the sigma-hole. Proceedings of "Modeling interactions in biomolecules II", Prague, September 5th-9th, 2005.

Authors:  Timothy Clark; Matthias Hennemann; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2006-08-23       Impact factor: 1.810

10.  Self-healing and thermoreversible rubber from supramolecular assembly.

Authors:  Philippe Cordier; François Tournilhac; Corinne Soulié-Ziakovic; Ludwik Leibler
Journal:  Nature       Date:  2008-02-21       Impact factor: 49.962

View more
  6 in total

1.  Pnictogen, chalcogen, and halogen bonds in catalytic systems: theoretical study and detailed comparison.

Authors:  Ling Lu; Yunxiang Lu; Zhengdan Zhu; Honglai Liu
Journal:  J Mol Model       Date:  2019-12-20       Impact factor: 1.810

2.  Involvement of Arsenic Atom of AsF3 in Five Pnicogen Bonds: Differences between X-ray Structure and Theoretical Models.

Authors:  Steve Scheiner; Mariusz Michalczyk; Wiktor Zierkiewicz
Journal:  Molecules       Date:  2022-10-01       Impact factor: 4.927

3.  The pnictogen bond: a quantitative molecular orbital picture.

Authors:  Lucas de Azevedo Santos; Trevor A Hamlin; Teodorico C Ramalho; F Matthias Bickelhaupt
Journal:  Phys Chem Chem Phys       Date:  2021-06-30       Impact factor: 3.676

4.  Theoretical Studies of IR and NMR Spectral Changes Induced by Sigma-Hole Hydrogen, Halogen, Chalcogen, Pnicogen, and Tetrel Bonds in a Model Protein Environment.

Authors:  Mariusz Michalczyk; Wiktor Zierkiewicz; Rafał Wysokiński; Steve Scheiner
Journal:  Molecules       Date:  2019-09-12       Impact factor: 4.411

5.  Tweaking the Charge Transfer: Bonding Analysis of Bismuth(III) Complexes with a Flexidentate Phosphane Ligand.

Authors:  Réka Mokrai; Jamie Barrett; David C Apperley; Zoltán Benkő; Dominikus Heift
Journal:  Inorg Chem       Date:  2020-06-12       Impact factor: 5.165

Review 6.  Noncovalent Bonds through Sigma and Pi-Hole Located on the Same Molecule. Guiding Principles and Comparisons.

Authors:  Wiktor Zierkiewicz; Mariusz Michalczyk; Steve Scheiner
Journal:  Molecules       Date:  2021-03-20       Impact factor: 4.411

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.