Literature DB >> 23021872

Micro-crystallography comes of age.

Janet L Smith1, Robert F Fischetti, Masaki Yamamoto.   

Abstract

The latest revolution in macromolecular crystallography was incited by the development of dedicated, user friendly, micro-crystallography beam lines. Brilliant X-ray beams of diameter 20 μm or less, now available at most synchrotron sources, enable structure determination from samples that previously were inaccessible. Relative to traditional crystallography, crystals with one or more small dimensions have diffraction patterns with vastly improved signal-to-noise when recorded with an appropriately matched beam size. Structures can be solved from isolated, well diffracting regions within inhomogeneous samples. This review summarizes the technological requirements and approaches to producing micro-beams and how they continue to change the practice of crystallography.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 23021872      PMCID: PMC3478446          DOI: 10.1016/j.sbi.2012.09.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  57 in total

1.  Diffraction cartography: applying microbeams to macromolecular crystallography sample evaluation and data collection.

Authors:  Matthew W Bowler; Matias Guijarro; Sebastien Petitdemange; Isabel Baker; Olof Svensson; Manfred Burghammer; Christoph Mueller-Dieckmann; Elspeth J Gordon; David Flot; Sean M McSweeney; Gordon A Leonard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-07-09

2.  Stable top-up operation at SPring-8.

Authors:  Hitoshi Tanaka; Masatoshi Adachi; Tsuyoshi Aoki; Takao Asaka; Alfred Baron; Shin Daté; Kenji Fukami; Yukito Furukawa; Hirofumi Hanaki; Naoyasu Hosoda; Tetsuya Ishikawa; Hiroaki Kimura; Kazuo Kobayashi; Toshiaki Kobayashi; Shinji Kohara; Noritaka Kumagai; Mitsuhiro Masaki; Takemasa Masuda; Sakuo Matsui; Akihiko Mizuno; Takeshi Nakamura; Takeshi Nakatani; Takashi Noda; Toru Ohata; Haruo Ohkuma; Takashi Ohshima; Masaya Oishi; Sigeki Sasaki; Jun Schimizu; Masazumi Shoji; Kouichi Soutome; Motohiro Suzuki; Shinsuke Suzuki; Yoshio Suzuki; Shirou Takano; Masaru Takao; Takeo Takashima; Hideki Takebe; Akihisa Takeuchi; Kazuhiro Tamura; Ryotaro Tanaka; Yoshihito Tanaka; Tsutomu Taniuchi; Yukiko Taniuchi; Kouji Tsumaki; Akihiro Yamashita; Kenichi Yanagida; Yoshitaka Yoda; Hiroto Yonehara; Tetsuhiko Yorita; Masamichi Yoshioka; Masaki Takata
Journal:  J Synchrotron Radiat       Date:  2006-08-12       Impact factor: 2.616

3.  The atomic structure of baculovirus polyhedra reveals the independent emergence of infectious crystals in DNA and RNA viruses.

Authors:  Fasséli Coulibaly; Elaine Chiu; Sascha Gutmann; Chitra Rajendran; Peter W Haebel; Keiko Ikeda; Hajime Mori; Vernon K Ward; Clemens Schulze-Briese; Peter Metcalf
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-10       Impact factor: 11.205

Review 4.  Small is beautiful: protein micro-crystallography.

Authors:  S Cusack; H Belrhali; A Bram; M Burghammer; A Perrakis; C Riekel
Journal:  Nat Struct Biol       Date:  1998-08

5.  Dark progression reveals slow timescales for radiation damage between T = 180 and 240 K.

Authors:  Matthew Warkentin; Ryan Badeau; Jesse Hopkins; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-08-09

6.  An automated system to mount cryo-cooled protein crystals on a synchrotron beam line, using compact sample cassettes and a small-scale robot.

Authors:  Aina E Cohen; Paul J Ellis; Mitchell D Miller; Ashley M Deacon; R Paul Phizackerley
Journal:  J Appl Crystallogr       Date:  2002-12       Impact factor: 3.304

Review 7.  Toward structure determination using membrane-protein nanocrystals and microcrystals.

Authors:  Mark S Hunter; Petra Fromme
Journal:  Methods       Date:  2011-12-22       Impact factor: 3.608

8.  Crystallizing membrane proteins for structure-function studies using lipidic mesophases.

Authors:  Martin Caffrey
Journal:  Biochem Soc Trans       Date:  2011-06       Impact factor: 5.407

9.  Know your dose: RADDOSE.

Authors:  Karthik S Paithankar; Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  A sensor-adaptor mechanism for enterovirus uncoating from structures of EV71.

Authors:  Xiangxi Wang; Wei Peng; Jingshan Ren; Zhongyu Hu; Jiwei Xu; Zhiyong Lou; Xumei Li; Weidong Yin; Xinliang Shen; Claudine Porta; Thomas S Walter; Gwyndaf Evans; Danny Axford; Robin Owen; David J Rowlands; Junzhi Wang; David I Stuart; Elizabeth E Fry; Zihe Rao
Journal:  Nat Struct Mol Biol       Date:  2012-03-04       Impact factor: 15.369

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  72 in total

1.  A prototype direct-detection CCD for protein crystallography.

Authors:  Katherine S Green; Doletha M E Szebenyi; Kasey Boggs; Richard Bredthauer; Mark W Tate; Sol M Gruner
Journal:  J Appl Crystallogr       Date:  2013-07-18       Impact factor: 3.304

Review 2.  Atomic-level analysis of membrane-protein structure.

Authors:  Wayne A Hendrickson
Journal:  Nat Struct Mol Biol       Date:  2016-06-07       Impact factor: 15.369

Review 3.  A Bright Future for Serial Femtosecond Crystallography with XFELs.

Authors:  Linda C Johansson; Benjamin Stauch; Andrii Ishchenko; Vadim Cherezov
Journal:  Trends Biochem Sci       Date:  2017-07-18       Impact factor: 13.807

4.  In situ serial Laue diffraction on a microfluidic crystallization device.

Authors:  Sarah L Perry; Sudipto Guha; Ashtamurthy S Pawate; Robert Henning; Irina Kosheleva; Vukica Srajer; Paul J A Kenis; Zhong Ren
Journal:  J Appl Crystallogr       Date:  2014-11-18       Impact factor: 3.304

5.  Predicted optical performance of the GM/CA@APS micro-focus beamline.

Authors:  Robert F Fischetti; Derek Yoder; Shenglan Xu; Oleg Makarov; Craig Ogata; Janet L Smith
Journal:  J Phys Conf Ser       Date:  2013

6.  Towards time-resolved serial crystallography in a microfluidic device.

Authors:  Ashtamurthy S Pawate; Vukica Šrajer; Jeremy Schieferstein; Sudipto Guha; Robert Henning; Irina Kosheleva; Marius Schmidt; Zhong Ren; Paul J A Kenis; Sarah L Perry
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-06-27       Impact factor: 1.056

7.  Microscopy Instrumentation and Nanopositioning at NSLS-II: Current Status and Future Directions.

Authors:  E Nazaretski; W Xu; H Yan; X Huang; D S Coburn; M Ge; W-K Lee; Y Gao; W Xu; M Fuchs; Y S Chu
Journal:  Synchrotron Radiat News       Date:  2018-09-25

8.  Graphene-based microfluidics for serial crystallography.

Authors:  Shuo Sui; Yuxi Wang; Kristopher W Kolewe; Vukica Srajer; Robert Henning; Jessica D Schiffman; Christos Dimitrakopoulos; Sarah L Perry
Journal:  Lab Chip       Date:  2016-08-02       Impact factor: 6.799

9.  Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography.

Authors:  Uwe Weierstall; Daniel James; Chong Wang; Thomas A White; Dingjie Wang; Wei Liu; John C H Spence; R Bruce Doak; Garrett Nelson; Petra Fromme; Raimund Fromme; Ingo Grotjohann; Christopher Kupitz; Nadia A Zatsepin; Haiguang Liu; Shibom Basu; Daniel Wacker; Gye Won Han; Vsevolod Katritch; Sébastien Boutet; Marc Messerschmidt; Garth J Williams; Jason E Koglin; M Marvin Seibert; Markus Klinker; Cornelius Gati; Robert L Shoeman; Anton Barty; Henry N Chapman; Richard A Kirian; Kenneth R Beyerlein; Raymond C Stevens; Dianfan Li; Syed T A Shah; Nicole Howe; Martin Caffrey; Vadim Cherezov
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

Review 10.  Structural biology of G protein-coupled receptors: new opportunities from XFELs and cryoEM.

Authors:  Andrii Ishchenko; Cornelius Gati; Vadim Cherezov
Journal:  Curr Opin Struct Biol       Date:  2018-03-16       Impact factor: 6.809

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