Literature DB >> 26144226

Towards time-resolved serial crystallography in a microfluidic device.

Ashtamurthy S Pawate1, Vukica Šrajer2, Jeremy Schieferstein1, Sudipto Guha1, Robert Henning2, Irina Kosheleva2, Marius Schmidt3, Zhong Ren2, Paul J A Kenis1, Sarah L Perry1.   

Abstract

Serial methods for crystallography have the potential to enable dynamic structural studies of protein targets that have been resistant to single-crystal strategies. The use of serial data-collection strategies can circumvent challenges associated with radiation damage and repeated reaction initiation. This work utilizes a microfluidic crystallization platform for the serial time-resolved Laue diffraction analysis of macroscopic crystals of photoactive yellow protein (PYP). Reaction initiation was achieved via pulsed laser illumination, and the resultant electron-density difference maps clearly depict the expected pR(1)/pR(E46Q) and pR(2)/pR(CW) states at 10 µs and the pB1 intermediate at 1 ms. The strategies presented here have tremendous potential for extension to chemical triggering methods for reaction initiation and for extension to dynamic, multivariable analyses.

Entities:  

Keywords:  Laue diffraction; microfluidics; photoactive yellow protein; protein crystallization; serial crystallography; time-resolved protein crystallography

Mesh:

Substances:

Year:  2015        PMID: 26144226      PMCID: PMC4498702          DOI: 10.1107/S2053230X15009061

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  52 in total

1.  Feasibility of one-shot-per-crystal structure determination using Laue diffraction.

Authors:  Sterling Cornaby; Doletha M E Szebenyi; Detlef-M Smilgies; David J Schuller; Richard Gillilan; Quan Hao; Donald H Bilderback
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

2.  Laue diffraction.

Authors:  K Moffat
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

3.  Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL.

Authors:  Kunio Hirata; Kyoko Shinzawa-Itoh; Naomine Yano; Shuhei Takemura; Koji Kato; Miki Hatanaka; Kazumasa Muramoto; Takako Kawahara; Tomitake Tsukihara; Eiki Yamashita; Kensuke Tono; Go Ueno; Takaaki Hikima; Hironori Murakami; Yuichi Inubushi; Makina Yabashi; Tetsuya Ishikawa; Masaki Yamamoto; Takashi Ogura; Hiroshi Sugimoto; Jian-Ren Shen; Shinya Yoshikawa; Hideo Ago
Journal:  Nat Methods       Date:  2014-05-11       Impact factor: 28.547

Review 4.  Micro-crystallography comes of age.

Authors:  Janet L Smith; Robert F Fischetti; Masaki Yamamoto
Journal:  Curr Opin Struct Biol       Date:  2012-09-26       Impact factor: 6.809

5.  An X-ray transparent microfluidic platform for screening of the phase behavior of lipidic mesophases.

Authors:  Daria S Khvostichenko; Elena Kondrashkina; Sarah L Perry; Ashtamurthy S Pawate; Keith Brister; Paul J A Kenis
Journal:  Analyst       Date:  2013-07-24       Impact factor: 4.616

Review 6.  Toward structure determination using membrane-protein nanocrystals and microcrystals.

Authors:  Mark S Hunter; Petra Fromme
Journal:  Methods       Date:  2011-12-22       Impact factor: 3.608

7.  A microfluidic approach for protein structure determination at room temperature via on-chip anomalous diffraction.

Authors:  Sarah L Perry; Sudipto Guha; Ashtamurthy S Pawate; Amrit Bhaskarla; Vinayak Agarwal; Satish K Nair; Paul J A Kenis
Journal:  Lab Chip       Date:  2013-07-05       Impact factor: 6.799

8.  A sensor-adaptor mechanism for enterovirus uncoating from structures of EV71.

Authors:  Xiangxi Wang; Wei Peng; Jingshan Ren; Zhongyu Hu; Jiwei Xu; Zhiyong Lou; Xumei Li; Weidong Yin; Xinliang Shen; Claudine Porta; Thomas S Walter; Gwyndaf Evans; Danny Axford; Robin Owen; David J Rowlands; Junzhi Wang; David I Stuart; Elizabeth E Fry; Zihe Rao
Journal:  Nat Struct Mol Biol       Date:  2012-03-04       Impact factor: 15.369

9.  Structure of a photosynthetic reaction centre determined by serial femtosecond crystallography.

Authors:  Linda C Johansson; David Arnlund; Gergely Katona; Thomas A White; Anton Barty; Daniel P DePonte; Robert L Shoeman; Cecilia Wickstrand; Amit Sharma; Garth J Williams; Andrew Aquila; Michael J Bogan; Carl Caleman; Jan Davidsson; R Bruce Doak; Matthias Frank; Raimund Fromme; Lorenzo Galli; Ingo Grotjohann; Mark S Hunter; Stephan Kassemeyer; Richard A Kirian; Christopher Kupitz; Mengning Liang; Lukas Lomb; Erik Malmerberg; Andrew V Martin; Marc Messerschmidt; Karol Nass; Lars Redecke; M Marvin Seibert; Jennie Sjöhamn; Jan Steinbrener; Francesco Stellato; Dingjie Wang; Weixaio Y Wahlgren; Uwe Weierstall; Sebastian Westenhoff; Nadia A Zatsepin; Sébastien Boutet; John C H Spence; Ilme Schlichting; Henry N Chapman; Petra Fromme; Richard Neutze
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  Serial crystallography on in vivo grown microcrystals using synchrotron radiation.

Authors:  Cornelius Gati; Gleb Bourenkov; Marco Klinge; Dirk Rehders; Francesco Stellato; Dominik Oberthür; Oleksandr Yefanov; Benjamin P Sommer; Stefan Mogk; Michael Duszenko; Christian Betzel; Thomas R Schneider; Henry N Chapman; Lars Redecke
Journal:  IUCrJ       Date:  2014-02-10       Impact factor: 4.769

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  8 in total

1.  Crystal-on-crystal chips for in situ serial diffraction at room temperature.

Authors:  Zhong Ren; Medine Ayhan; Sepalika Bandara; Kalinga Bowatte; Indika Kumarapperuma; Semini Gunawardana; Heewhan Shin; Cong Wang; Xiaoli Zeng; Xiaojing Yang
Journal:  Lab Chip       Date:  2018-07-24       Impact factor: 6.799

2.  Graphene-based microfluidics for serial crystallography.

Authors:  Shuo Sui; Yuxi Wang; Kristopher W Kolewe; Vukica Srajer; Robert Henning; Jessica D Schiffman; Christos Dimitrakopoulos; Sarah L Perry
Journal:  Lab Chip       Date:  2016-08-02       Impact factor: 6.799

3.  Watching Proteins Function with Time-resolved X-ray Crystallography.

Authors:  Vukica Šrajer; Marius Schmidt
Journal:  J Phys D Appl Phys       Date:  2017-08-22       Impact factor: 3.207

4.  Plug-and-play polymer microfluidic chips for hydrated, room temperature, fixed-target serial crystallography.

Authors:  Deepshika Gilbile; Megan L Shelby; Artem Y Lyubimov; Jennifer L Wierman; Diana C F Monteiro; Aina E Cohen; Silvia Russi; Matthew A Coleman; Matthias Frank; Tonya L Kuhl
Journal:  Lab Chip       Date:  2021-12-07       Impact factor: 7.517

Review 5.  Protein ensembles link genotype to phenotype.

Authors:  Ruth Nussinov; Chung-Jung Tsai; Hyunbum Jang
Journal:  PLoS Comput Biol       Date:  2019-06-20       Impact factor: 4.475

Review 6.  The Fabrication and Application Mechanism of Microfluidic Systems for High Throughput Biomedical Screening: A Review.

Authors:  Kena Song; Guoqiang Li; Xiangyang Zu; Zhe Du; Liyu Liu; Zhigang Hu
Journal:  Micromachines (Basel)       Date:  2020-03-11       Impact factor: 2.891

7.  Mixing and jetting analysis using continuous flow microfluidic sample delivery devices.

Authors:  Majid Hejazian; Connie Darmanin; Eugeniu Balaur; Brian Abbey
Journal:  RSC Adv       Date:  2020-04-21       Impact factor: 4.036

8.  Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis.

Authors:  Masatoshi Maeki; Sho Ito; Reo Takeda; Go Ueno; Akihiko Ishida; Hirofumi Tani; Masaki Yamamoto; Manabu Tokeshi
Journal:  Chem Sci       Date:  2020-08-25       Impact factor: 9.825

  8 in total

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