Literature DB >> 28733116

A Bright Future for Serial Femtosecond Crystallography with XFELs.

Linda C Johansson1, Benjamin Stauch1, Andrii Ishchenko1, Vadim Cherezov2.   

Abstract

X-ray free electron lasers (XFELs) have the potential to revolutionize macromolecular structural biology due to the unique combination of spatial coherence, extreme peak brilliance, and short duration of X-ray pulses. A recently emerged serial femtosecond (fs) crystallography (SFX) approach using XFEL radiation overcomes some of the biggest hurdles of traditional crystallography related to radiation damage through the diffraction-before-destruction principle. Intense fs XFEL pulses enable high-resolution room-temperature structure determination of difficult-to-crystallize biological macromolecules, while simultaneously opening a new era of time-resolved structural studies. Here, we review the latest developments in instrumentation, sample delivery, data analysis, crystallization methods, and applications of SFX to important biological questions, and conclude with brief insights into the bright future of structural biology using XFELs.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  X-ray free electron laser; lipidic cubic phase; membrane proteins; molecular movies; protein complexes; structural biology

Mesh:

Substances:

Year:  2017        PMID: 28733116      PMCID: PMC5600683          DOI: 10.1016/j.tibs.2017.06.007

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  98 in total

1.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

2.  Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein.

Authors:  Kanupriya Pande; Christopher D M Hutchison; Gerrit Groenhof; Andy Aquila; Josef S Robinson; Jason Tenboer; Shibom Basu; Sébastien Boutet; Daniel P DePonte; Mengning Liang; Thomas A White; Nadia A Zatsepin; Oleksandr Yefanov; Dmitry Morozov; Dominik Oberthuer; Cornelius Gati; Ganesh Subramanian; Daniel James; Yun Zhao; Jake Koralek; Jennifer Brayshaw; Christopher Kupitz; Chelsie Conrad; Shatabdi Roy-Chowdhury; Jesse D Coe; Markus Metz; Paulraj Lourdu Xavier; Thomas D Grant; Jason E Koglin; Gihan Ketawala; Raimund Fromme; Vukica Šrajer; Robert Henning; John C H Spence; Abbas Ourmazd; Peter Schwander; Uwe Weierstall; Matthias Frank; Petra Fromme; Anton Barty; Henry N Chapman; Keith Moffat; Jasper J van Thor; Marius Schmidt
Journal:  Science       Date:  2016-05-05       Impact factor: 47.728

3.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

Review 4.  Assessment of microcrystal quality by transmission electron microscopy for efficient serial femtosecond crystallography.

Authors:  Christopher O Barnes; Elena G Kovaleva; Xiaofeng Fu; Hilary P Stevenson; Aaron S Brewster; Daniel P DePonte; Elizabeth L Baxter; Aina E Cohen; Guillermo Calero
Journal:  Arch Biochem Biophys       Date:  2016-03-02       Impact factor: 4.013

5.  Crystal cryocooling distorts conformational heterogeneity in a model Michaelis complex of DHFR.

Authors:  Daniel A Keedy; Henry van den Bedem; David A Sivak; Gregory A Petsko; Dagmar Ringe; Mark A Wilson; James S Fraser
Journal:  Structure       Date:  2014-05-29       Impact factor: 5.006

6.  Overview of the SACLA facility.

Authors:  Makina Yabashi; Hitoshi Tanaka; Tetsuya Ishikawa
Journal:  J Synchrotron Radiat       Date:  2015-04-16       Impact factor: 2.616

7.  Fixed-target protein serial microcrystallography with an x-ray free electron laser.

Authors:  Mark S Hunter; Brent Segelke; Marc Messerschmidt; Garth J Williams; Nadia A Zatsepin; Anton Barty; W Henry Benner; David B Carlson; Matthew Coleman; Alexander Graf; Stefan P Hau-Riege; Tommaso Pardini; M Marvin Seibert; James Evans; Sébastien Boutet; Matthias Frank
Journal:  Sci Rep       Date:  2014-08-12       Impact factor: 4.379

8.  High-density grids for efficient data collection from multiple crystals.

Authors:  Elizabeth L Baxter; Laura Aguila; Roberto Alonso-Mori; Christopher O Barnes; Christopher A Bonagura; Winnie Brehmer; Axel T Brunger; Guillermo Calero; Tom T Caradoc-Davies; Ruchira Chatterjee; William F Degrado; James S Fraser; Mohamed Ibrahim; Jan Kern; Brian K Kobilka; Andrew C Kruse; Karl M Larsson; Heinrik T Lemke; Artem Y Lyubimov; Aashish Manglik; Scott E McPhillips; Erik Norgren; Siew S Pang; S M Soltis; Jinhu Song; Jessica Thomaston; Yingssu Tsai; William I Weis; Rahel A Woldeyes; Vittal Yachandra; Junko Yano; Athina Zouni; Aina E Cohen
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-01-01       Impact factor: 7.652

9.  Improvements in serial femtosecond crystallography of photosystem II by optimizing crystal uniformity using microseeding procedures.

Authors:  Mohamed Ibrahim; Ruchira Chatterjee; Julia Hellmich; Rosalie Tran; Martin Bommer; Vittal K Yachandra; Junko Yano; Jan Kern; Athina Zouni
Journal:  Struct Dyn       Date:  2015       Impact factor: 2.920

10.  Recent developments in CrystFEL.

Authors:  Thomas A White; Valerio Mariani; Wolfgang Brehm; Oleksandr Yefanov; Anton Barty; Kenneth R Beyerlein; Fedor Chervinskii; Lorenzo Galli; Cornelius Gati; Takanori Nakane; Alexandra Tolstikova; Keitaro Yamashita; Chun Hong Yoon; Kay Diederichs; Henry N Chapman
Journal:  J Appl Crystallogr       Date:  2016-03-29       Impact factor: 3.304

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  35 in total

Review 1.  The Mechanisms of Substrate Selection, Catalysis, and Translocation by the Elongating RNA Polymerase.

Authors:  Georgiy A Belogurov; Irina Artsimovitch
Journal:  J Mol Biol       Date:  2019-05-31       Impact factor: 5.469

2.  A science education model for large collaborative centers.

Authors:  William J Bauer; Sarah B Woodruff
Journal:  Struct Dyn       Date:  2021-03-05       Impact factor: 2.920

3.  Light-Sensitive Membrane Proteins as Tools to Generate Precision Treatments.

Authors:  Elena Lesca
Journal:  J Membr Biol       Date:  2020-04-04       Impact factor: 1.843

4.  Pattern-matching indexing of Laue and monochromatic serial crystallography data for applications in materials science.

Authors:  Catherine Dejoie; Nobumichi Tamura
Journal:  J Appl Crystallogr       Date:  2020-05-29       Impact factor: 3.304

Review 5.  An outlook on using serial femtosecond crystallography in drug discovery.

Authors:  Alexey Mishin; Anastasiia Gusach; Aleksandra Luginina; Egor Marin; Valentin Borshchevskiy; Vadim Cherezov
Journal:  Expert Opin Drug Discov       Date:  2019-06-11       Impact factor: 6.098

6.  Oxygen K-edge X-ray Absorption Spectra.

Authors:  Federica Frati; Myrtille O J Y Hunault; Frank M F de Groot
Journal:  Chem Rev       Date:  2020-04-10       Impact factor: 60.622

7.  A statistical model for improved membrane protein expression using sequence-derived features.

Authors:  Shyam M Saladi; Nauman Javed; Axel Müller; William M Clemons
Journal:  J Biol Chem       Date:  2018-01-29       Impact factor: 5.157

8.  Structure Determination from Lipidic Cubic Phase Embedded Microcrystals by MicroED.

Authors:  Lan Zhu; Guanhong Bu; Liang Jing; Dan Shi; Ming-Yue Lee; Tamir Gonen; Wei Liu; Brent L Nannenga
Journal:  Structure       Date:  2020-07-30       Impact factor: 5.006

Review 9.  Serial Femtosecond Crystallography of G Protein-Coupled Receptors.

Authors:  Benjamin Stauch; Vadim Cherezov
Journal:  Annu Rev Biophys       Date:  2018-03-15       Impact factor: 12.981

10.  X-ray Emission Spectroscopy as an in Situ Diagnostic Tool for X-ray Crystallography of Metalloproteins Using an X-ray Free-Electron Laser.

Authors:  Thomas Fransson; Ruchira Chatterjee; Franklin D Fuller; Sheraz Gul; Clemens Weninger; Dimosthenis Sokaras; Thomas Kroll; Roberto Alonso-Mori; Uwe Bergmann; Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Biochemistry       Date:  2018-06-28       Impact factor: 3.162

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