Literature DB >> 22197730

Toward structure determination using membrane-protein nanocrystals and microcrystals.

Mark S Hunter1, Petra Fromme.   

Abstract

Membrane proteins are very important for all living cells, being involved in respiration, photosynpan>thesis, cellular uptake and signal transduction, amongst other vital functions. However, less than 300 unique membrane protein structures have been determined to date, often due to difficulties associated with the growth of sufficiently large and well-ordered crystals. This work has been focused on showing the first proof of concept for using membrane protein nanocrystals and microcrystals for high-resolution structure determination. Upon determining that crystals of the membrane protein Photosystem I, which is the largest and most complex membrane protein crystallized to date, exist with only 100 unit cells with sizes of less than 200 nm on an edge, work was done to develop a technique that could exploit the growth of the Photosystem I nanocrystals and microcrystals. Femtosecond X-ray protein nanocrystallography was developed for use at the first high-energy X-ray free electron laser, the LCLS at SLAC National Accelerator Laboratory, in which a liquid jet brought fully-hydrated Photosystem I nanocrystals into the interaction region of the pulsed X-ray source. Diffraction patterns were recorded from millions of individual PSI nanocrystals and data from thousands of different, randomly oriented crystallites were integrated using Monte Carlo integration of the peak intensities. The short pulses (∼70fs) provided by the LCLS allowed the possibility to collect the diffraction data before the onset of radiation damage, exploiting the diffract-before-destroy principle. During the initial experiments at the AMO beamline using 6.9-Å wavelength, Bragg peaks were recorded to 8.5-Å resolution, and an electron-density map was determined that did not show any effects of X-ray-induced radiation damage [94]. Many additional techniques still need to be developed to explore the femtosecond nanocrystallography technique for experimental phasing and time-resolved X-ray crystallography experiments. The first proof-of-principle results for the femtosecond nanocrystallography technique indicate the incredible potential of the technique to offer a new route to the structure determination of membrane proteins.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22197730      PMCID: PMC3414265          DOI: 10.1016/j.ymeth.2011.12.006

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  81 in total

1.  Photosystem I, an improved model of the stromal subunits PsaC, PsaD, and PsaE.

Authors:  O Klukas; W D Schubert; P Jordan; N Krauss; P Fromme; H T Witt; W Saenger
Journal:  J Biol Chem       Date:  1999-03-12       Impact factor: 5.157

2.  Generation of GW radiation pulses from a VUV free-electron laser operating in the femtosecond regime.

Authors:  V Ayvazyan; N Baboi; I Bohnet; R Brinkmann; M Castellano; P Castro; L Catani; S Choroba; A Cianchi; M Dohlus; H T Edwards; B Faatz; A A Fateev; J Feldhaus; K Flöttmann; A Gamp; T Garvey; H Genz; Ch Gerth; V Gretchko; B Grigoryan; U Hahn; C Hessler; K Honkavaara; M Hüning; R Ischebeck; M Jablonka; T Kamps; M Körfer; M Krassilnikov; J Krzywinski; M Liepe; A Liero; T Limberg; H Loos; M Luong; C Magne; J Menzel; P Michelato; M Minty; U-C Müller; D Nölle; A Novokhatski; C Pagani; F Peters; J Pflüger; P Piot; L Plucinski; K Rehlich; I Reyzl; A Richter; J Rossbach; E L Saldin; W Sandner; H Schlarb; G Schmidt; P Schmüser; J R Schneider; E A Schneidmiller; H-J Schreiber; S Schreiber; D Sertore; S Setzer; S Simrock; R Sobierajski; B Sonntag; B Steeg; F Stephan; K P Sytchev; K Tiedtke; M Tonutti; R Treusch; D Trines; D Türke; V Verzilov; R Wanzenberg; T Weiland; H Weise; M Wendt; I Will; S Wolff; K Wittenburg; M V Yurkov; K Zapfe
Journal:  Phys Rev Lett       Date:  2002-02-25       Impact factor: 9.161

3.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

4.  X-ray diffraction from membrane protein nanocrystals.

Authors:  M S Hunter; D P DePonte; D A Shapiro; R A Kirian; X Wang; D Starodub; S Marchesini; U Weierstall; R B Doak; J C H Spence; P Fromme
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

5.  Powder crystallography on macromolecules.

Authors:  I Margiolaki; J P Wright
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

6.  X-ray Laue Diffraction from Protein Crystals.

Authors:  K Moffat; D Szebenyi; D Bilderback
Journal:  Science       Date:  1984-03-30       Impact factor: 47.728

7.  Femtosecond protein nanocrystallography-data analysis methods.

Authors:  Richard A Kirian; Xiaoyu Wang; Uwe Weierstall; Kevin E Schmidt; John C H Spence; Mark Hunter; Petra Fromme; Thomas White; Henry N Chapman; James Holton
Journal:  Opt Express       Date:  2010-03-15       Impact factor: 3.894

8.  Crystallizing membrane proteins for structure-function studies using lipidic mesophases.

Authors:  Martin Caffrey
Journal:  Biochem Soc Trans       Date:  2011-06       Impact factor: 5.407

Review 9.  Amphipols: polymeric surfactants for membrane biology research.

Authors:  J-L Popot; E A Berry; D Charvolin; C Creuzenet; C Ebel; D M Engelman; M Flötenmeyer; F Giusti; Y Gohon; Q Hong; J H Lakey; K Leonard; H A Shuman; P Timmins; D E Warschawski; F Zito; M Zoonens; B Pucci; C Tribet
Journal:  Cell Mol Life Sci       Date:  2003-08       Impact factor: 9.261

10.  The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A.

Authors:  T Tsukihara; H Aoyama; E Yamashita; T Tomizaki; H Yamaguchi; K Shinzawa-Itoh; R Nakashima; R Yaono; S Yoshikawa
Journal:  Science       Date:  1996-05-24       Impact factor: 47.728

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  22 in total

1.  In situ serial Laue diffraction on a microfluidic crystallization device.

Authors:  Sarah L Perry; Sudipto Guha; Ashtamurthy S Pawate; Robert Henning; Irina Kosheleva; Vukica Srajer; Paul J A Kenis; Zhong Ren
Journal:  J Appl Crystallogr       Date:  2014-11-18       Impact factor: 3.304

2.  Towards time-resolved serial crystallography in a microfluidic device.

Authors:  Ashtamurthy S Pawate; Vukica Šrajer; Jeremy Schieferstein; Sudipto Guha; Robert Henning; Irina Kosheleva; Marius Schmidt; Zhong Ren; Paul J A Kenis; Sarah L Perry
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-06-27       Impact factor: 1.056

3.  Graphene-based microfluidics for serial crystallography.

Authors:  Shuo Sui; Yuxi Wang; Kristopher W Kolewe; Vukica Srajer; Robert Henning; Jessica D Schiffman; Christos Dimitrakopoulos; Sarah L Perry
Journal:  Lab Chip       Date:  2016-08-02       Impact factor: 6.799

4.  Approaches to automated protein crystal harvesting.

Authors:  Marc C Deller; Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-28       Impact factor: 1.056

5.  Transmission electron microscopy as a tool for nanocrystal characterization pre- and post-injector.

Authors:  H P Stevenson; D P DePonte; A M Makhov; James F Conway; O B Zeldin; S Boutet; G Calero; A E Cohen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

6.  Use of transmission electron microscopy to identify nanocrystals of challenging protein targets.

Authors:  Hilary P Stevenson; Alexander M Makhov; Monica Calero; Andrea L Edwards; Oliver B Zeldin; Irimpan I Mathews; Guowu Lin; Christopher O Barnes; Hugo Santamaria; Ted M Ross; S Michael Soltis; Chaitan Khosla; V Nagarajan; James F Conway; Aina E Cohen; Guillermo Calero
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-28       Impact factor: 11.205

Review 7.  Micro-crystallography comes of age.

Authors:  Janet L Smith; Robert F Fischetti; Masaki Yamamoto
Journal:  Curr Opin Struct Biol       Date:  2012-09-26       Impact factor: 6.809

8.  3D printed droplet generation devices for serial femtosecond crystallography enabled by surface coating.

Authors:  Austin Echelmeier; Daihyun Kim; Jorvani Cruz Villarreal; Jesse Coe; Sebastian Quintana; Gerrit Brehm; Ana Egatz-Gomez; Reza Nazari; Raymond G Sierra; Jason E Koglin; Alexander Batyuk; Mark S Hunter; Sébastien Boutet; Nadia Zatsepin; Richard A Kirian; Thomas D Grant; Petra Fromme; Alexandra Ros
Journal:  J Appl Crystallogr       Date:  2019-08-29       Impact factor: 3.304

9.  XFELs open a new era in structural chemical biology.

Authors:  Petra Fromme
Journal:  Nat Chem Biol       Date:  2015-12       Impact factor: 15.040

10.  Crystallization of the large membrane protein complex photosystem I in a microfluidic channel.

Authors:  Bahige G Abdallah; Christopher Kupitz; Petra Fromme; Alexandra Ros
Journal:  ACS Nano       Date:  2013-11-14       Impact factor: 15.881

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