Literature DB >> 25383086

Predicted optical performance of the GM/CA@APS micro-focus beamline.

Robert F Fischetti1, Derek Yoder1, Shenglan Xu1, Oleg Makarov1, Craig Ogata1, Janet L Smith2.   

Abstract

GM/CA at the APS has developed microcrystallography capabilities for structural biology applications. The robust, quad, mini-beam collimators, which enable users to rapidly select between a 5, 10 or 20 micron diameter beam or a scatter guard for the full focused beam, are coupled with several powerful automated software tools that are built into the beamline control system JBluIce-EPICS. Recent successes at beamlines around the world in solving structures from microcrystals (2 - 10 microns) have led to increased demand for high-intensity micro-focus beams. We have designed a new micro-focus endstation to increase the intensity in mini- and micro-beams at GM/CA by one to two orders of magnitude to meet this growing demand. The new optical design is based on the well-established approach of using two-stage demagnification. The existing bimorph mirrors, arranged in a Kirkpatrick-Baez geometry, focus the beam onto slits located upstream of the sample whereby the slit aperture defines a secondary source, that is reimaged with a second pair of mirrors. This design incorporates two focal modes: a mini-beam mode where the beam is focused to 20-micron diameter and a micro-beam mode where it is focused to 5-microns. The size of the secondary source aperture can be varied rapidly (seconds) to adjust the beam size at the sample position in two ranges 20 - 3 micron and 5 - 1 micron. The second set of mirrors will each have two super polished ellipses allowing quick (minutes) interchange between modes.

Entities:  

Year:  2013        PMID: 25383086      PMCID: PMC4222077          DOI: 10.1088/1742-6596/425/1/012006

Source DB:  PubMed          Journal:  J Phys Conf Ser        ISSN: 1742-6588


  12 in total

1.  Multi-segmented piezoelectric mirrors as active/adaptive optics components.

Authors:  R Signorato; O Hignette; J Goulon
Journal:  J Synchrotron Radiat       Date:  1998-05-01       Impact factor: 2.616

2.  Structure of the cross-beta spine of amyloid-like fibrils.

Authors:  Rebecca Nelson; Michael R Sawaya; Melinda Balbirnie; Anders Ø Madsen; Christian Riekel; Robert Grothe; David Eisenberg
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

3.  Mini-beam collimator enables microcrystallography experiments on standard beamlines.

Authors:  Robert F Fischetti; Shenglan Xu; Derek W Yoder; Michael Becker; Venugopalan Nagarajan; Ruslan Sanishvili; Mark C Hilgart; Sergey Stepanov; Oleg Makarov; Janet L Smith
Journal:  J Synchrotron Radiat       Date:  2009-01-10       Impact factor: 2.616

4.  JBluIce-EPICS control system for macromolecular crystallography.

Authors:  Sergey Stepanov; Oleg Makarov; Mark Hilgart; Sudhir Babu Pothineni; Alex Urakhchin; Satish Devarapalli; Derek Yoder; Michael Becker; Craig Ogata; Ruslan Sanishvili; Nagarajan Venugopalan; Janet L Smith; Robert F Fischetti
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-02-15

5.  Computational design of proteins targeting the conserved stem region of influenza hemagglutinin.

Authors:  Sarel J Fleishman; Timothy A Whitehead; Damian C Ekiert; Cyrille Dreyfus; Jacob E Corn; Eva-Maria Strauch; Ian A Wilson; David Baker
Journal:  Science       Date:  2011-05-13       Impact factor: 47.728

6.  Radiation damage in protein crystals is reduced with a micron-sized X-ray beam.

Authors:  Ruslan Sanishvili; Derek W Yoder; Sudhir Babu Pothineni; Gerd Rosenbaum; Shenglan Xu; Stefan Vogt; Sergey Stepanov; Oleg A Makarov; Stephen Corcoran; Richard Benn; Venugopalan Nagarajan; Janet L Smith; Robert F Fischetti
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

Review 7.  Micro-crystallography comes of age.

Authors:  Janet L Smith; Robert F Fischetti; Masaki Yamamoto
Journal:  Curr Opin Struct Biol       Date:  2012-09-26       Impact factor: 6.809

8.  Crystal structure of the human beta2 adrenergic G-protein-coupled receptor.

Authors:  Søren G F Rasmussen; Hee-Jung Choi; Daniel M Rosenbaum; Tong Sun Kobilka; Foon Sun Thian; Patricia C Edwards; Manfred Burghammer; Venkata R P Ratnala; Ruslan Sanishvili; Robert F Fischetti; Gebhard F X Schertler; William I Weis; Brian K Kobilka
Journal:  Nature       Date:  2007-10-21       Impact factor: 49.962

9.  Structural basis for allosteric regulation of GPCRs by sodium ions.

Authors:  Wei Liu; Eugene Chun; Aaron A Thompson; Pavel Chubukov; Fei Xu; Vsevolod Katritch; Gye Won Han; Christopher B Roth; Laura H Heitman; Adriaan P IJzerman; Vadim Cherezov; Raymond C Stevens
Journal:  Science       Date:  2012-07-13       Impact factor: 47.728

10.  Crystal structure of the β2 adrenergic receptor-Gs protein complex.

Authors:  Søren G F Rasmussen; Brian T DeVree; Yaozhong Zou; Andrew C Kruse; Ka Young Chung; Tong Sun Kobilka; Foon Sun Thian; Pil Seok Chae; Els Pardon; Diane Calinski; Jesper M Mathiesen; Syed T A Shah; Joseph A Lyons; Martin Caffrey; Samuel H Gellman; Jan Steyaert; Georgios Skiniotis; William I Weis; Roger K Sunahara; Brian K Kobilka
Journal:  Nature       Date:  2011-07-19       Impact factor: 49.962

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  5 in total

1.  FMX - the Frontier Microfocusing Macromolecular Crystallography Beamline at the National Synchrotron Light Source II.

Authors:  Dieter K Schneider; Wuxian Shi; Babak Andi; Jean Jakoncic; Yuan Gao; Dileep K Bhogadi; Stuart F Myers; Bruno Martins; John M Skinner; Jun Aishima; Kun Qian; Herbert J Bernstein; Edwin O Lazo; Thomas Langdon; John Lara; Grace Shea-McCarthy; Mourad Idir; Lei Huang; Oleg Chubar; Robert M Sweet; Lonny E Berman; Sean McSweeney; Martin R Fuchs
Journal:  J Synchrotron Radiat       Date:  2021-02-25       Impact factor: 2.616

2.  Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation.

Authors:  Jose M Martin-Garcia; Chelsie E Conrad; Garrett Nelson; Natasha Stander; Nadia A Zatsepin; James Zook; Lan Zhu; James Geiger; Eugene Chun; David Kissick; Mark C Hilgart; Craig Ogata; Andrii Ishchenko; Nirupa Nagaratnam; Shatabdi Roy-Chowdhury; Jesse Coe; Ganesh Subramanian; Alexander Schaffer; Daniel James; Gihan Ketwala; Nagarajan Venugopalan; Shenglan Xu; Stephen Corcoran; Dale Ferguson; Uwe Weierstall; John C H Spence; Vadim Cherezov; Petra Fromme; Robert F Fischetti; Wei Liu
Journal:  IUCrJ       Date:  2017-05-24       Impact factor: 4.769

3.  Using refractive optics to broaden the focus of an X-ray mirror.

Authors:  David Laundy; Kawal Sawhney; Vishal Dhamgaye
Journal:  J Synchrotron Radiat       Date:  2017-05-30       Impact factor: 2.616

4.  In vacuo X-ray data collection from graphene-wrapped protein crystals.

Authors:  Anna J Warren; Adam D Crawshaw; Jose Trincao; Pierre Aller; Simon Alcock; Ioana Nistea; Paula S Salgado; Gwyndaf Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-09-26

5.  A high-transparency, micro-patternable chip for X-ray diffraction analysis of microcrystals under native growth conditions.

Authors:  Thomas D Murray; Artem Y Lyubimov; Craig M Ogata; Huy Vo; Monarin Uervirojnangkoorn; Axel T Brunger; James M Berger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-09-26
  5 in total

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