Literature DB >> 20693684

Diffraction cartography: applying microbeams to macromolecular crystallography sample evaluation and data collection.

Matthew W Bowler1, Matias Guijarro, Sebastien Petitdemange, Isabel Baker, Olof Svensson, Manfred Burghammer, Christoph Mueller-Dieckmann, Elspeth J Gordon, David Flot, Sean M McSweeney, Gordon A Leonard.   

Abstract

Crystals of biological macromolecules often exhibit considerable inter-crystal and intra-crystal variation in diffraction quality. This requires the evaluation of many samples prior to data collection, a practice that is already widespread in macromolecular crystallography. As structural biologists move towards tackling ever more ambitious projects, new automated methods of sample evaluation will become crucial to the success of many projects, as will the availability of synchrotron-based facilities optimized for high-throughput evaluation of the diffraction characteristics of samples. Here, two examples of the types of advanced sample evaluation that will be required are presented: searching within a sample-containing loop for microcrystals using an X-ray beam of 5 microm diameter and selecting the most ordered regions of relatively large crystals using X-ray beams of 5-50 microm in diameter. A graphical user interface developed to assist with these screening methods is also presented. For the case in which the diffraction quality of a relatively large crystal is probed using a microbeam, the usefulness and implications of mapping diffraction-quality heterogeneity (diffraction cartography) are discussed. The implementation of these techniques in the context of planned upgrades to the ESRF's structural biology beamlines is also presented.

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Year:  2010        PMID: 20693684     DOI: 10.1107/S0907444910019591

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  59 in total

1.  Measurement of the equilibrium relative humidity for common precipitant concentrations: facilitating controlled dehydration experiments.

Authors:  Matthew J Wheeler; Silvia Russi; Michael G Bowler; Matthew W Bowler
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-12-24

Review 2.  Ice breaking in GPCR structural biology.

Authors:  Qiang Zhao; Bei-li Wu
Journal:  Acta Pharmacol Sin       Date:  2012-01-30       Impact factor: 6.150

3.  Phasing statistics for alpha helical membrane protein structures.

Authors:  Joanne L Parker; Simon Newstead
Journal:  Protein Sci       Date:  2013-09-17       Impact factor: 6.725

4.  JBluIce-EPICS control system for macromolecular crystallography.

Authors:  Sergey Stepanov; Oleg Makarov; Mark Hilgart; Sudhir Babu Pothineni; Alex Urakhchin; Satish Devarapalli; Derek Yoder; Michael Becker; Craig Ogata; Ruslan Sanishvili; Nagarajan Venugopalan; Janet L Smith; Robert F Fischetti
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-02-15

5.  Fast fluorescence techniques for crystallography beamlines.

Authors:  Sergey Stepanov; Mark Hilgart; Derek W Yoder; Oleg Makarov; Michael Becker; Ruslan Sanishvili; Craig M Ogata; Nagarajan Venugopalan; David Aragão; Martin Caffrey; Janet L Smith; Robert F Fischetti
Journal:  J Appl Crystallogr       Date:  2011-06-08       Impact factor: 3.304

6.  Automated sample-scanning methods for radiation damage mitigation and diffraction-based centering of macromolecular crystals.

Authors:  Mark C Hilgart; Ruslan Sanishvili; Craig M Ogata; Michael Becker; Nagarajan Venugopalan; Sergey Stepanov; Oleg Makarov; Janet L Smith; Robert F Fischetti
Journal:  J Synchrotron Radiat       Date:  2011-07-29       Impact factor: 2.616

7.  MraY-antibiotic complex reveals details of tunicamycin mode of action.

Authors:  Jonna K Hakulinen; Jenny Hering; Gisela Brändén; Hongming Chen; Arjan Snijder; Margareta Ek; Patrik Johansson
Journal:  Nat Chem Biol       Date:  2017-01-09       Impact factor: 15.040

8.  Current trends in α-helical membrane protein crystallization: an update.

Authors:  Joanne L Parker; Simon Newstead
Journal:  Protein Sci       Date:  2012-08-10       Impact factor: 6.725

9.  Measurement of the intrinsic variability within protein crystals: implications for sample-evaluation and data-collection strategies.

Authors:  Michael G Bowler; Matthew W Bowler
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2013-12-24       Impact factor: 1.056

10.  The Myb domain of LUX ARRHYTHMO in complex with DNA: expression, purification and crystallization.

Authors:  Catarina S Silva; Xuelei Lai; Max Nanao; Chloe Zubieta
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-04-22       Impact factor: 1.056

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