Literature DB >> 21599641

Crystallizing membrane proteins for structure-function studies using lipidic mesophases.

Martin Caffrey1.   

Abstract

The lipidic cubic phase method for crystallizing membrane proteins has posted some high-profile successes recently. This is especially true in the area of G-protein-coupled receptors, with six new crystallographic structures emerging in the last 3½ years. Slowly, it is becoming an accepted method with a proven record and convincing generality. However, it is not a method that is used in every membrane structural biology laboratory and that is unfortunate. The reluctance in adopting it is attributable, in part, to the anticipated difficulties associated with handling the sticky viscous cubic mesophase in which crystals grow. Harvesting and collecting diffraction data with the mesophase-grown crystals is also viewed with some trepidation. It is acknowledged that there are challenges associated with the method. However, over the years, we have worked to make the method user-friendly. To this end, tools for handling the mesophase in the pico- to nano-litre volume range have been developed for efficient crystallization screening in manual and robotic modes. Glass crystallization plates have been built that provide unparalleled optical quality and sensitivity to nascent crystals. Lipid and precipitant screens have been implemented for a more rational approach to crystallogenesis, such that the method can now be applied to a wide variety of membrane protein types and sizes. In the present article, these assorted advances are outlined, along with a summary of the membrane proteins that have yielded to the method. The challenges that must be overcome to develop the method further are described.

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Year:  2011        PMID: 21599641      PMCID: PMC3739445          DOI: 10.1042/BST0390725

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  43 in total

Review 1.  Molecular mechanism for the crystallization of bacteriorhodopsin in lipidic cubic phases.

Authors:  P Nollert; H Qiu; M Caffrey; J P Rosenbusch; E M Landau
Journal:  FEBS Lett       Date:  2001-08-31       Impact factor: 4.124

2.  Rational design of lipid for membrane protein crystallization.

Authors:  Yohann Misquitta; Vadim Cherezov; Fabien Havas; Suzanne Patterson; Jakkam M Mohan; Angela J Wells; David J Hart; Martin Caffrey
Journal:  J Struct Biol       Date:  2004-11       Impact factor: 2.867

3.  High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor.

Authors:  Vadim Cherezov; Daniel M Rosenbaum; Michael A Hanson; Søren G F Rasmussen; Foon Sun Thian; Tong Sun Kobilka; Hee-Jung Choi; Peter Kuhn; William I Weis; Brian K Kobilka; Raymond C Stevens
Journal:  Science       Date:  2007-10-25       Impact factor: 47.728

4.  Controlling release from the lipidic cubic phase. Amino acids, peptides, proteins and nucleic acids.

Authors:  J Clogston; M Caffrey
Journal:  J Control Release       Date:  2005-09-20       Impact factor: 9.776

5.  Controlling release from the lipidic cubic phase by selective alkylation.

Authors:  J Clogston; G Craciun; D J Hart; M Caffrey
Journal:  J Control Release       Date:  2005-02-02       Impact factor: 9.776

6.  Membrane protein crystallization in lipidic mesophases with tailored bilayers.

Authors:  Lisa V Misquitta; Yohann Misquitta; Vadim Cherezov; Orla Slattery; Jakkam M Mohan; David Hart; Mariya Zhalnina; William A Cramer; Martin Caffrey
Journal:  Structure       Date:  2004-12       Impact factor: 5.006

7.  Membrane protein crystallization in meso: lipid type-tailoring of the cubic phase.

Authors:  Vadim Cherezov; Jeffrey Clogston; Yohann Misquitta; Wissam Abdel-Gawad; Martin Caffrey
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

8.  A lipidic-sponge phase screen for membrane protein crystallization.

Authors:  Annemarie B Wöhri; Linda C Johansson; Pia Wadsten-Hindrichsen; Weixiao Y Wahlgren; Gerhard Fischer; Rob Horsefield; Gergely Katona; Maria Nyblom; Fredrik Oberg; Gillian Young; Richard J Cogdell; Niall J Fraser; Sven Engström; Richard Neutze
Journal:  Structure       Date:  2008-07       Impact factor: 5.006

9.  The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.

Authors:  Veli-Pekka Jaakola; Mark T Griffith; Michael A Hanson; Vadim Cherezov; Ellen Y T Chien; J Robert Lane; Adriaan P Ijzerman; Raymond C Stevens
Journal:  Science       Date:  2008-10-02       Impact factor: 47.728

10.  The structural basis for agonist and partial agonist action on a β(1)-adrenergic receptor.

Authors:  Tony Warne; Rouslan Moukhametzianov; Jillian G Baker; Rony Nehmé; Patricia C Edwards; Andrew G W Leslie; Gebhard F X Schertler; Christopher G Tate
Journal:  Nature       Date:  2011-01-13       Impact factor: 49.962

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  19 in total

1.  Towards protein-crystal centering using second-harmonic generation (SHG) microscopy.

Authors:  David J Kissick; Christopher M Dettmar; Michael Becker; Anne M Mulichak; Vadim Cherezov; Stephan L Ginell; Kevin P Battaile; Lisa J Keefe; Robert F Fischetti; Garth J Simpson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-04-19

2.  High-resolution structure of a membrane protein transferred from amphipol to a lipidic mesophase.

Authors:  V Polovinkin; I Gushchin; M Sintsov; E Round; T Balandin; P Chervakov; V Shevchenko; P Utrobin; A Popov; V Borshchevskiy; A Mishin; A Kuklin; D Willbold; V Chupin; J-L Popot; V Gordeliy
Journal:  J Membr Biol       Date:  2014-09-06       Impact factor: 1.843

3.  Surfactant bilayers maintain transmembrane protein activity.

Authors:  Gamal Rayan; Vladimir Adrien; Myriam Reffay; Martin Picard; Arnaud Ducruix; Marc Schmutz; Wladimir Urbach; Nicolas Taulier
Journal:  Biophys J       Date:  2014-09-02       Impact factor: 4.033

4.  Liposome display for in vitro selection and evolution of membrane proteins.

Authors:  Satoshi Fujii; Tomoaki Matsuura; Takeshi Sunami; Takehiro Nishikawa; Yasuaki Kazuta; Tetsuya Yomo
Journal:  Nat Protoc       Date:  2014-06-05       Impact factor: 13.491

Review 5.  Micro-crystallography comes of age.

Authors:  Janet L Smith; Robert F Fischetti; Masaki Yamamoto
Journal:  Curr Opin Struct Biol       Date:  2012-09-26       Impact factor: 6.809

Review 6.  Structural basis for the coordination of cell division with the synthesis of the bacterial cell envelope.

Authors:  Simon Booth; Richard J Lewis
Journal:  Protein Sci       Date:  2019-09-30       Impact factor: 6.725

7.  An X-ray transparent microfluidic platform for screening of the phase behavior of lipidic mesophases.

Authors:  Daria S Khvostichenko; Elena Kondrashkina; Sarah L Perry; Ashtamurthy S Pawate; Keith Brister; Paul J A Kenis
Journal:  Analyst       Date:  2013-07-24       Impact factor: 4.616

Review 8.  Toward structure determination using membrane-protein nanocrystals and microcrystals.

Authors:  Mark S Hunter; Petra Fromme
Journal:  Methods       Date:  2011-12-22       Impact factor: 3.608

Review 9.  Crystallization chaperone strategies for membrane proteins.

Authors:  Raquel L Lieberman; Jeffrey A Culver; Kevin C Entzminger; Jennifer C Pai; Jennifer A Maynard
Journal:  Methods       Date:  2011-08-11       Impact factor: 3.608

Review 10.  Amphipols for each season.

Authors:  Manuela Zoonens; Jean-Luc Popot
Journal:  J Membr Biol       Date:  2014-06-27       Impact factor: 1.843

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