Literature DB >> 27241728

Graphene-based microfluidics for serial crystallography.

Shuo Sui1, Yuxi Wang1, Kristopher W Kolewe1, Vukica Srajer2, Robert Henning2, Jessica D Schiffman1, Christos Dimitrakopoulos1, Sarah L Perry1.   

Abstract

Microfluidic strategies to enable the growth and subsequent serial crystallographic analysis of micro-crystals have the potential to facilitate both structural characterization and dynamic structural studies of protein targets that have been resistant to single-crystal strategies. However, adapting microfluidic crystallization platforms for micro-crystallography requires a dramatic decrease in the overall device thickness. We report a robust strategy for the straightforward incorporation of single-layer graphene into ultra-thin microfluidic devices. This architecture allows for a total material thickness of only ∼1 μm, facilitating on-chip X-ray diffraction analysis while creating a sample environment that is stable against significant water loss over several weeks. We demonstrate excellent signal-to-noise in our X-ray diffraction measurements using a 1.5 μs polychromatic X-ray exposure, and validate our approach via on-chip structure determination using hen egg white lysozyme (HEWL) as a model system. Although this work is focused on the use of graphene for protein crystallography, we anticipate that this technology should find utility in a wide range of both X-ray and other lab on a chip applications.

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Year:  2016        PMID: 27241728      PMCID: PMC4970872          DOI: 10.1039/c6lc00451b

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  101 in total

1.  Monolithic microfabricated valves and pumps by multilayer soft lithography.

Authors:  M A Unger; H P Chou; T Thorsen; A Scherer; S R Quake
Journal:  Science       Date:  2000-04-07       Impact factor: 47.728

2.  A molecular movie at 1.8 A resolution displays the photocycle of photoactive yellow protein, a eubacterial blue-light receptor, from nanoseconds to seconds.

Authors:  Z Ren; B Perman; V Srajer; T Y Teng; C Pradervand; D Bourgeois; F Schotte; T Ursby; R Kort; M Wulff; K Moffat
Journal:  Biochemistry       Date:  2001-11-20       Impact factor: 3.162

3.  Structure of tetragonal hen egg-white lysozyme at 0.94 A from crystals grown by the counter-diffusion method.

Authors:  C Sauter; F Otálora; J A Gavira; O Vidal; R Giegé; J M García-Ruiz
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-07-23

4.  Semi-automatic protein crystallization system that allows in situ observation of X-ray diffraction from crystals in the drop.

Authors:  Nobuhisa Watanabe; Hiroshi Murai; Isao Tanaka
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-26

5.  Automated analysis of vapor diffusion crystallization drops with an X-ray beam.

Authors:  Lilian Jacquamet; Jeremy Ohana; Jacques Joly; Franck Borel; Michel Pirocchi; Philippe Charrault; Alain Bertoni; Pascale Israel-Gouy; Philippe Carpentier; Frank Kozielski; Delphine Blot; Jean-Luc Ferrer
Journal:  Structure       Date:  2004-07       Impact factor: 5.006

6.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

Review 7.  Virus crystallography.

Authors:  E E Fry; J Grimes; D I Stuart
Journal:  Mol Biotechnol       Date:  1999-08       Impact factor: 2.695

8.  Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.

Authors:  Hyotcherl Ihee; Sudarshan Rajagopal; Vukica Srajer; Reinhard Pahl; Spencer Anderson; Marius Schmidt; Friedrich Schotte; Philip A Anfinrud; Michael Wulff; Keith Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

9.  Toward on-chip X-ray analysis.

Authors:  Eduardo D Greaves; Andreas Manz
Journal:  Lab Chip       Date:  2005-02-18       Impact factor: 6.799

10.  High-resolution structure (1.33 A) of a HEW lysozyme tetragonal crystal grown in the APCF apparatus. Data and structural comparison with a crystal grown under microgravity from SpaceHab-01 mission.

Authors:  M C Vaney; S Maignan; M Riès-Kautt; A Ducriux
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-05-01
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  13 in total

1.  Crystal-on-crystal chips for in situ serial diffraction at room temperature.

Authors:  Zhong Ren; Medine Ayhan; Sepalika Bandara; Kalinga Bowatte; Indika Kumarapperuma; Semini Gunawardana; Heewhan Shin; Cong Wang; Xiaoli Zeng; Xiaojing Yang
Journal:  Lab Chip       Date:  2018-07-24       Impact factor: 6.799

2.  X-ray transparent microfluidic platforms for membrane protein crystallization with microseeds.

Authors:  Jeremy M Schieferstein; Ashtamurthy S Pawate; Michael J Varel; Sudipto Guha; Ieva Astrauskaite; Robert B Gennis; Paul J A Kenis
Journal:  Lab Chip       Date:  2018-03-13       Impact factor: 6.799

3.  Watching Proteins Function with Time-resolved X-ray Crystallography.

Authors:  Vukica Šrajer; Marius Schmidt
Journal:  J Phys D Appl Phys       Date:  2017-08-22       Impact factor: 3.207

4.  Plug-and-play polymer microfluidic chips for hydrated, room temperature, fixed-target serial crystallography.

Authors:  Deepshika Gilbile; Megan L Shelby; Artem Y Lyubimov; Jennifer L Wierman; Diana C F Monteiro; Aina E Cohen; Silvia Russi; Matthew A Coleman; Matthias Frank; Tonya L Kuhl
Journal:  Lab Chip       Date:  2021-12-07       Impact factor: 7.517

5.  Successive Release of Tissue Inhibitors of Metalloproteinase-1 Through Graphene Oxide-Based Delivery System Can Promote Skin Regeneration.

Authors:  Cheng Zhong; Dike Shi; Yixiong Zheng; Peter J Nelson; Qi Bao
Journal:  Nanoscale Res Lett       Date:  2017-09-15       Impact factor: 4.703

6.  Real-Time Measurement of Protein Crystal Growth Rates within the Microfluidic Device to Understand the Microspace Effect.

Authors:  Masatoshi Maeki; Shohei Yamazaki; Reo Takeda; Akihiko Ishida; Hirofumi Tani; Manabu Tokeshi
Journal:  ACS Omega       Date:  2020-07-08

7.  Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis.

Authors:  Masatoshi Maeki; Sho Ito; Reo Takeda; Go Ueno; Akihiko Ishida; Hirofumi Tani; Masaki Yamamoto; Manabu Tokeshi
Journal:  Chem Sci       Date:  2020-08-25       Impact factor: 9.825

8.  Polyimide mesh-based sample holder with irregular crystal mounting holes for fixed-target serial crystallography.

Authors:  Ki Hyun Nam; Jihan Kim; Yunje Cho
Journal:  Sci Rep       Date:  2021-06-23       Impact factor: 4.379

Review 9.  Protein microcrystallography using synchrotron radiation.

Authors:  Masaki Yamamoto; Kunio Hirata; Keitaro Yamashita; Kazuya Hasegawa; Go Ueno; Hideo Ago; Takashi Kumasaka
Journal:  IUCrJ       Date:  2017-08-08       Impact factor: 4.769

10.  Contact angle measurement of free-standing square-millimeter single-layer graphene.

Authors:  Anna V Prydatko; Liubov A Belyaeva; Lin Jiang; Lia M C Lima; Grégory F Schneider
Journal:  Nat Commun       Date:  2018-10-10       Impact factor: 14.919

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