Literature DB >> 22872367

On the use of ultracentrifugal devices for sedimented solute NMR.

Ivano Bertini1, Frank Engelke, Leonardo Gonnelli, Benno Knott, Claudio Luchinat, David Osen, Enrico Ravera.   

Abstract

We have recently proposed sedimented solute NMR (SedNMR) as a solid-state method to access biomolecules without the need of crystallization or other sample manipulation. The drawback of SedNMR is that samples are intrinsically diluted and this is detrimental for the signal intensity. Ultracentrifugal devices can be used to increase the amount of sample inside the rotor, overcoming the intrinsic sensitivity limitation of the method. We designed two different devices and we here report the directions for using such devices and the relevant equations for determining the parameters for sedimentation.

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Year:  2012        PMID: 22872367     DOI: 10.1007/s10858-012-9657-y

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  50 in total

1.  Domain orientation and dynamics in multidomain proteins from residual dipolar couplings.

Authors:  M W Fischer; J A Losonczi; J L Weaver; J H Prestegard
Journal:  Biochemistry       Date:  1999-07-13       Impact factor: 3.162

2.  NMR analysis of a 900K GroEL GroES complex.

Authors:  Jocelyne Fiaux; Eric B Bertelsen; Arthur L Horwich; Kurt Wüthrich
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

3.  Constraints on supramolecular structure in amyloid fibrils from two-dimensional solid-state NMR spectroscopy with uniform isotopic labeling.

Authors:  Robert Tycko; Yoshitaka Ishii
Journal:  J Am Chem Soc       Date:  2003-06-04       Impact factor: 15.419

4.  Measurement of site-specific 13C spin-lattice relaxation in a crystalline protein.

Authors:  Józef R Lewandowski; Julien Sein; Hans Jürgen Sass; Stephan Grzesiek; Martin Blackledge; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2010-06-23       Impact factor: 15.419

5.  13C- 13C NOESY spectra of a 480 kDa protein: solution NMR of ferritin.

Authors:  Manolis Matzapetakis; Paola Turano; Elizabeth C Theil; Ivano Bertini
Journal:  J Biomol NMR       Date:  2007-06-07       Impact factor: 2.835

6.  Solid-state and solution NMR studies of the CAP-Gly domain of mammalian dynactin and its interaction with microtubules.

Authors:  Shangjin Sun; Amanda Siglin; John C Williams; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2009-07-29       Impact factor: 15.419

7.  Characterization of different water pools in solid-state NMR protein samples.

Authors:  Anja Böckmann; Carole Gardiennet; René Verel; Andreas Hunkeler; Antoine Loquet; Guido Pintacuda; Lyndon Emsley; Beat H Meier; Anne Lesage
Journal:  J Biomol NMR       Date:  2009-11       Impact factor: 2.835

8.  Broad-band homo-nuclear correlations assisted by 1H irradiation for bio-molecules in very high magnetic field at fast and ultra-fast MAS frequencies.

Authors:  Bingwen Hu; Oliver Lafon; Julien Trébosc; Qun Chen; Jean-Paul Amoureux
Journal:  J Magn Reson       Date:  2011-07-23       Impact factor: 2.229

9.  NMR techniques used with very large biological macromolecules in solution.

Authors:  Gerhard Wider
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

10.  Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

Authors:  Vitali Tugarinov; Voula Kanelis; Lewis E Kay
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

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  16 in total

1.  Practical considerations over spectral quality in solid state NMR spectroscopy of soluble proteins.

Authors:  Marco Fragai; Claudio Luchinat; Giacomo Parigi; Enrico Ravera
Journal:  J Biomol NMR       Date:  2013-08-30       Impact factor: 2.835

2.  SedNMR: a web tool for optimizing sedimentation of macromolecular solutes for SSNMR.

Authors:  Lucio Ferella; Claudio Luchinat; Enrico Ravera; Antonio Rosato
Journal:  J Biomol NMR       Date:  2013-11-17       Impact factor: 2.835

3.  Solid-state NMR enhanced by dynamic nuclear polarization as a novel tool for ribosome structural biology.

Authors:  Ioannis Gelis; Veronika Vitzthum; Neha Dhimole; Marc A Caporini; Andreas Schedlbauer; Diego Carnevale; Sean R Connell; Paola Fucini; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2013-05-21       Impact factor: 2.835

4.  Insights into the structure and dynamics of measles virus nucleocapsids by 1H-detected solid-state NMR.

Authors:  Emeline Barbet-Massin; Michele Felletti; Robert Schneider; Stefan Jehle; Guillaume Communie; Nicolas Martinez; Malene Ringkjøbing Jensen; Rob W H Ruigrok; Lyndon Emsley; Anne Lesage; Martin Blackledge; Guido Pintacuda
Journal:  Biophys J       Date:  2014-08-19       Impact factor: 4.033

5.  On the use of ultracentrifugal devices for routine sample preparation in biomolecular magic-angle-spinning NMR.

Authors:  Abhishek Mandal; Jennifer C Boatz; Travis B Wheeler; Patrick C A van der Wel
Journal:  J Biomol NMR       Date:  2017-02-22       Impact factor: 2.835

6.  MAS 1H NMR Probes Freezing Point Depression of Water and Liquid-Gel Phase Transitions in Liposomes.

Authors:  Abhishek Mandal; Patrick C A van der Wel
Journal:  Biophys J       Date:  2016-11-01       Impact factor: 4.033

7.  Solid-state NMR of the Yersinia pestis outer membrane protein Ail in lipid bilayer nanodiscs sedimented by ultracentrifugation.

Authors:  Yi Ding; L Miya Fujimoto; Yong Yao; Francesca M Marassi
Journal:  J Biomol NMR       Date:  2015-01-13       Impact factor: 2.835

8.  Production and Preparation of Isotopically Labeled Human Membrane Proteins in Pichia pastoris for Fast-MAS-NMR Analyses.

Authors:  Lina Barret; Tobias Schubeis; Valérie Kugler; Lucile Guyot; Guido Pintacuda; Renaud Wagner
Journal:  Methods Mol Biol       Date:  2022

9.  Structural Changes and Proapoptotic Peroxidase Activity of Cardiolipin-Bound Mitochondrial Cytochrome c.

Authors:  Abhishek Mandal; Cody L Hoop; Maria DeLucia; Ravindra Kodali; Valerian E Kagan; Jinwoo Ahn; Patrick C A van der Wel
Journal:  Biophys J       Date:  2015-11-03       Impact factor: 4.033

Review 10.  Facing and Overcoming Sensitivity Challenges in Biomolecular NMR Spectroscopy.

Authors:  Jan-Henrik Ardenkjaer-Larsen; Gregory S Boebinger; Arnaud Comment; Simon Duckett; Arthur S Edison; Frank Engelke; Christian Griesinger; Robert G Griffin; Christian Hilty; Hidaeki Maeda; Giacomo Parigi; Thomas Prisner; Enrico Ravera; Jan van Bentum; Shimon Vega; Andrew Webb; Claudio Luchinat; Harald Schwalbe; Lucio Frydman
Journal:  Angew Chem Int Ed Engl       Date:  2015-07-01       Impact factor: 15.336

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