Literature DB >> 23689811

Solid-state NMR enhanced by dynamic nuclear polarization as a novel tool for ribosome structural biology.

Ioannis Gelis1, Veronika Vitzthum, Neha Dhimole, Marc A Caporini, Andreas Schedlbauer, Diego Carnevale, Sean R Connell, Paola Fucini, Geoffrey Bodenhausen.   

Abstract

The impact of Nuclear Magnetic Resonance (NMR) on studies of large macromolecular complexes hinges on improvements in sensitivity and resolution. Dynamic nuclear polarization (DNP) in the solid state can offer improved sensitivity, provided sample preparation is optimized to preserve spectral resolution. For a few nanomoles of intact ribosomes and an 800 kDa ribosomal complex we demonstrate that the combination of DNP and magic-angle spinning NMR (MAS-NMR) allows one to overcome current sensitivity limitations so that homo- and heteronuclear (13)C and (15)N NMR correlation spectra can be recorded. Ribosome particles, directly pelleted and frozen into an NMR rotor, yield DNP signal enhancements on the order of ~25-fold and spectra that exhibit narrow linewidths, suitable for obtaining site-specific information. We anticipate that the same approach is applicable to other high molecular weight complexes.

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Year:  2013        PMID: 23689811     DOI: 10.1007/s10858-013-9721-2

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  50 in total

1.  Dynamic nuclear polarization-enhanced solid-state NMR spectroscopy of GNNQQNY nanocrystals and amyloid fibrils.

Authors:  Galia T Debelouchina; Marvin J Bayro; Patrick C A van der Wel; Marc A Caporini; Alexander B Barnes; Melanie Rosay; Werner E Maas; Robert G Griffin
Journal:  Phys Chem Chem Phys       Date:  2010-05-08       Impact factor: 3.676

2.  Resolution and polarization distribution in cryogenic DNP/MAS experiments.

Authors:  Alexander B Barnes; Björn Corzilius; Melody L Mak-Jurkauskas; Loren B Andreas; Vikram S Bajaj; Yoh Matsuki; Marina L Belenky; Johan Lugtenburg; Jagadishwar R Sirigiri; Richard J Temkin; Judith Herzfeld; Robert G Griffin
Journal:  Phys Chem Chem Phys       Date:  2010-05-08       Impact factor: 3.676

3.  Conformation and dynamics of ribosomal stalk protein L12 in solution and on the ribosome.

Authors:  Frans A A Mulder; Lamine Bouakaz; Anna Lundell; Musturi Venkataramana; Anders Liljas; Mikael Akke; Suparna Sanyal
Journal:  Biochemistry       Date:  2004-05-25       Impact factor: 3.162

4.  NMR properties of sedimented solutes.

Authors:  Ivano Bertini; Frank Engelke; Claudio Luchinat; Giacomo Parigi; Enrico Ravera; Camilla Rosa; Paola Turano
Journal:  Phys Chem Chem Phys       Date:  2011-11-25       Impact factor: 3.676

5.  Cotranslational structure acquisition of nascent polypeptides monitored by NMR spectroscopy.

Authors:  Cédric Eichmann; Steffen Preissler; Roland Riek; Elke Deuerling
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-03       Impact factor: 11.205

6.  The effect of biradical concentration on the performance of DNP-MAS-NMR.

Authors:  Sascha Lange; Arne H Linden; Umit Akbey; W Trent Franks; Nikolaus M Loening; Barth-Jan van Rossum; Hartmut Oschkinat
Journal:  J Magn Reson       Date:  2012-01-08       Impact factor: 2.229

7.  Polarization-enhanced NMR spectroscopy of biomolecules in frozen solution.

Authors:  D A Hall; D C Maus; G J Gerfen; S J Inati; L R Becerra; F W Dahlquist; R G Griffin
Journal:  Science       Date:  1997-05-09       Impact factor: 47.728

8.  Dynamic nuclear polarization of amyloidogenic peptide nanocrystals: GNNQQNY, a core segment of the yeast prion protein Sup35p.

Authors:  Patrick C A van der Wel; Kan-Nian Hu; Józef Lewandowski; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2006-08-23       Impact factor: 15.419

9.  Dynamic nuclear polarization-enhanced solid-state NMR of a 13C-labeled signal peptide bound to lipid-reconstituted Sec translocon.

Authors:  Lenica Reggie; Jakob J Lopez; Ian Collinson; Clemens Glaubitz; Mark Lorch
Journal:  J Am Chem Soc       Date:  2011-11-07       Impact factor: 15.419

10.  High-Field Dynamic Nuclear Polarization for Solid and Solution Biological NMR.

Authors:  A B Barnes; G De Paëpe; P C A van der Wel; K-N Hu; C-G Joo; V S Bajaj; M L Mak-Jurkauskas; J R Sirigiri; J Herzfeld; R J Temkin; R G Griffin
Journal:  Appl Magn Reson       Date:  2008-08       Impact factor: 0.831

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  22 in total

1.  Practical considerations over spectral quality in solid state NMR spectroscopy of soluble proteins.

Authors:  Marco Fragai; Claudio Luchinat; Giacomo Parigi; Enrico Ravera
Journal:  J Biomol NMR       Date:  2013-08-30       Impact factor: 2.835

2.  SedNMR: a web tool for optimizing sedimentation of macromolecular solutes for SSNMR.

Authors:  Lucio Ferella; Claudio Luchinat; Enrico Ravera; Antonio Rosato
Journal:  J Biomol NMR       Date:  2013-11-17       Impact factor: 2.835

3.  Topical Developments in High-Field Dynamic Nuclear Polarization.

Authors:  Vladimir K Michaelis; Ta-Chung Ong; Matthew K Kiesewetter; Derik K Frantz; Joseph J Walish; Enrico Ravera; Claudio Luchinat; Timothy M Swager; Robert G Griffin
Journal:  Isr J Chem       Date:  2014-02-13       Impact factor: 3.333

4.  Perturbation of nuclear spin polarizations in solid state NMR of nitroxide-doped samples by magic-angle spinning without microwaves.

Authors:  Kent R Thurber; Robert Tycko
Journal:  J Chem Phys       Date:  2014-05-14       Impact factor: 3.488

5.  NMR-based structural biology enhanced by dynamic nuclear polarization at high magnetic field.

Authors:  Eline J Koers; Elwin A W van der Cruijsen; Melanie Rosay; Markus Weingarth; Alexander Prokofyev; Claire Sauvée; Olivier Ouari; Johan van der Zwan; Olaf Pongs; Paul Tordo; Werner E Maas; Marc Baldus
Journal:  J Biomol NMR       Date:  2014-10-05       Impact factor: 2.835

Review 6.  High-sensitivity protein solid-state NMR spectroscopy.

Authors:  Venkata S Mandala; Mei Hong
Journal:  Curr Opin Struct Biol       Date:  2019-04-25       Impact factor: 6.809

7.  Frequency-Swept Integrated and Stretched Solid Effect Dynamic Nuclear Polarization.

Authors:  T V Can; J E McKay; R T Weber; C Yang; T Dubroca; J van Tol; S Hill; R G Griffin
Journal:  J Phys Chem Lett       Date:  2018-06-01       Impact factor: 6.475

8.  Peptide and Protein Dynamics and Low-Temperature/DNP Magic Angle Spinning NMR.

Authors:  Qing Zhe Ni; Evgeny Markhasin; Thach V Can; Björn Corzilius; Kong Ooi Tan; Alexander B Barnes; Eugenio Daviso; Yongchao Su; Judith Herzfeld; Robert G Griffin
Journal:  J Phys Chem B       Date:  2017-05-10       Impact factor: 2.991

9.  Dynamic nuclear polarization of 17O: direct polarization.

Authors:  Vladimir K Michaelis; Björn Corzilius; Albert A Smith; Robert G Griffin
Journal:  J Phys Chem B       Date:  2013-11-22       Impact factor: 2.991

10.  Gd(iii) and Mn(ii) complexes for dynamic nuclear polarization: small molecular chelate polarizing agents and applications with site-directed spin labeling of proteins.

Authors:  Monu Kaushik; Thorsten Bahrenberg; Thach V Can; Marc A Caporini; Robert Silvers; Jörg Heiliger; Albert A Smith; Harald Schwalbe; Robert G Griffin; Björn Corzilius
Journal:  Phys Chem Chem Phys       Date:  2016-08-22       Impact factor: 3.676

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